Wall clock time and date at job start Tue Mar 31 2020 18:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34798 * 116.99834 * 2 1 4 4 O 1.21527 * 120.00469 * 0.02562 * 3 2 1 5 5 C 1.46955 * 119.99643 * 180.02562 * 3 2 1 6 6 C 1.33085 * 119.99685 * 180.02562 * 5 3 2 7 7 C 1.50704 * 120.00075 * 180.02562 * 6 5 3 8 8 H 1.09003 * 109.46729 * 4.99633 * 7 6 5 9 9 C 1.52999 * 109.47356 * 125.00052 * 7 6 5 10 10 N 1.46506 * 109.46851 * 245.00221 * 7 6 5 11 11 C 1.34777 * 119.99695 * 154.99973 * 10 7 6 12 12 O 1.21280 * 120.00073 * 0.27175 * 11 10 7 13 13 C 1.50697 * 119.99730 * 179.97438 * 11 10 7 14 14 C 1.50706 * 109.47036 * 179.97438 * 13 11 10 15 15 C 1.38294 * 119.93130 * 269.72914 * 14 13 11 16 16 C 1.38099 * 120.07055 * 179.72623 * 15 14 13 17 17 C 1.38885 * 119.92916 * 0.56465 * 16 15 14 18 18 O 1.35746 * 120.07221 * 179.68553 * 17 16 15 19 19 C 1.34828 * 117.00240 * 174.48968 * 18 17 16 20 20 H 1.08006 * 120.00054 * 5.05118 * 19 18 17 21 21 C 1.38655 * 120.00332 * 185.05591 * 19 18 17 22 22 N 1.31553 * 119.99844 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00136 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47105 * 60.00000 * 23 21 19 25 25 H 1.48499 * 109.47036 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47062 * 300.00069 * 23 21 19 27 27 C 1.38888 * 119.85809 * 359.70827 * 17 16 15 28 28 C 1.38097 * 119.93011 * 359.97438 * 27 17 16 29 29 H 1.09003 * 109.46847 * 299.99328 * 1 2 3 30 30 H 1.08996 * 109.47162 * 59.99285 * 1 2 3 31 31 H 1.09002 * 109.46784 * 180.02562 * 1 2 3 32 32 H 1.07998 * 120.00663 * 0.02562 * 5 3 2 33 33 H 1.08003 * 120.00035 * 0.02562 * 6 5 3 34 34 H 1.08993 * 109.46808 * 179.97438 * 9 7 6 35 35 H 1.09002 * 109.47125 * 300.00158 * 9 7 6 36 36 H 1.09009 * 109.46681 * 60.00121 * 9 7 6 37 37 H 0.96998 * 119.99717 * 334.99868 * 10 7 6 38 38 H 1.08996 * 109.47419 * 299.99635 * 13 11 10 39 39 H 1.09002 * 109.47566 * 60.00041 * 13 11 10 40 40 H 1.08001 * 119.96614 * 359.97036 * 15 14 13 41 41 H 1.08000 * 120.04137 * 180.26759 * 16 15 14 42 42 H 0.97003 * 120.00423 * 179.97438 * 22 21 19 43 43 H 1.08002 * 120.03290 * 179.97438 * 27 17 16 44 44 H 1.07997 * 119.96090 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2011 0.0000 4 8 1.4021 2.2203 0.0005 5 6 3.5315 1.2779 -0.0006 6 6 4.1356 2.4638 -0.0001 7 6 5.6406 2.5427 -0.0012 8 1 6.0569 1.5394 -0.0919 9 6 6.1057 3.3966 -1.1825 10 7 6.0987 3.1501 1.2508 11 6 7.3365 2.8865 1.7143 12 8 8.0729 2.1505 1.0923 13 6 7.8079 3.5118 3.0018 14 6 9.2151 3.0585 3.2947 15 6 9.4302 1.9173 4.0456 16 6 10.7184 1.4962 4.3109 17 6 11.7985 2.2266 3.8327 18 8 13.0660 1.8189 4.0972 19 6 14.0656 2.5067 3.5092 20 1 13.8444 3.3894 2.9275 21 6 15.3774 2.0807 3.6511 22 7 15.6468 1.0057 4.3600 23 14 16.7622 3.0332 2.8359 24 1 16.7786 4.4244 3.3550 25 1 18.0593 2.3764 3.1377 26 1 16.5493 3.0556 1.3664 27 6 11.5791 3.3755 3.0837 28 6 10.2885 3.7876 2.8163 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 4.1198 0.3722 -0.0014 33 1 3.5474 3.3695 0.0012 34 1 7.1941 3.4540 -1.1830 35 1 5.7648 2.9447 -2.1140 36 1 5.6893 4.3999 -1.0916 37 1 5.5111 3.7419 1.7461 38 1 7.7879 4.5974 2.9073 39 1 7.1512 3.2058 3.8162 40 1 8.5899 1.3525 4.4215 41 1 10.8859 0.6025 4.8937 42 1 16.5645 0.7074 4.4591 43 1 12.4170 3.9459 2.7108 44 1 10.1173 4.6806 2.2336 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347559922.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:02 Heat of formation + Delta-G solvation = -133.669119 kcal Electronic energy + Delta-G solvation = -26579.886214 eV Core-core repulsion = 22462.654879 eV Total energy + Delta-G solvation = -4117.231335 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.44921 -41.10277 -40.43978 -38.37872 -37.79100 -37.05238 -34.39202 -34.03063 -32.81556 -31.75572 -31.06007 -28.77396 -28.14158 -26.97885 -25.48927 -23.61196 -23.16388 -22.11504 -21.44340 -20.61948 -19.82347 -19.01253 -18.80208 -18.05390 -17.69917 -17.38199 -17.01595 -16.60282 -16.34890 -15.89778 -15.78148 -15.50630 -15.09812 -15.01150 -14.92719 -14.59590 -14.37115 -14.35522 -14.15028 -13.76971 -13.55630 -13.42274 -13.06593 -12.93982 -12.87426 -12.73672 -12.44005 -12.29616 -12.21461 -12.15123 -12.11656 -11.83893 -11.74166 -11.16119 -11.06960 -10.80251 -10.63171 -10.12840 -9.73725 -8.87600 -8.45996 -6.14252 -0.10454 0.64133 0.70336 1.34469 1.45635 1.51178 1.67961 1.76531 1.79652 2.18704 2.40281 2.87657 3.20092 3.47791 3.54876 3.86786 3.91215 3.99913 4.08461 4.15929 4.21719 4.26298 4.28998 4.32267 4.39045 4.53194 4.62260 4.69893 4.72936 4.76149 4.83497 4.90755 5.02710 5.12043 5.16151 5.17586 5.28627 5.32048 5.33934 5.51832 5.59246 5.73993 5.80703 6.04195 6.25994 6.62066 6.64035 6.98410 7.38018 7.80151 8.77209 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.025272 B = 0.001744 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.695381 B =16053.814930 C =16357.770037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.496 3.504 4 O -0.538 6.538 5 C -0.179 4.179 6 C -0.042 4.042 7 C 0.166 3.834 8 H 0.083 0.917 9 C -0.159 4.159 10 N -0.715 5.715 11 C 0.515 3.485 12 O -0.574 6.574 13 C -0.078 4.078 14 C -0.145 4.145 15 C -0.058 4.058 16 C -0.207 4.207 17 C 0.111 3.889 18 O -0.234 6.234 19 C -0.415 4.415 20 H 0.100 0.900 21 C -0.024 4.024 22 N -0.921 5.921 23 Si 1.019 2.981 24 H -0.255 1.255 25 H -0.270 1.270 26 H -0.260 1.260 27 C -0.245 4.245 28 C -0.060 4.060 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.130 0.870 32 H 0.153 0.847 33 H 0.145 0.855 34 H 0.047 0.953 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.419 0.581 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.147 0.853 41 H 0.111 0.889 42 H 0.272 0.728 43 H 0.117 0.883 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.309 5.614 -9.002 32.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.343 3.657 4 O -0.431 6.431 5 C -0.199 4.199 6 C -0.061 4.061 7 C 0.062 3.938 8 H 0.101 0.899 9 C -0.217 4.217 10 N -0.369 5.369 11 C 0.303 3.697 12 O -0.452 6.452 13 C -0.117 4.117 14 C -0.146 4.146 15 C -0.076 4.076 16 C -0.227 4.227 17 C 0.061 3.939 18 O -0.141 6.141 19 C -0.491 4.491 20 H 0.117 0.883 21 C -0.221 4.221 22 N -0.560 5.560 23 Si 0.838 3.162 24 H -0.179 1.179 25 H -0.195 1.195 26 H -0.184 1.184 27 C -0.264 4.264 28 C -0.077 4.077 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.148 0.852 32 H 0.171 0.829 33 H 0.163 0.837 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.256 0.744 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.165 0.835 41 H 0.129 0.871 42 H 0.081 0.919 43 H 0.134 0.866 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -29.765 5.054 -9.240 31.573 hybrid contribution 0.634 0.185 -0.043 0.662 sum -29.131 5.239 -9.283 31.020 Atomic orbital electron populations 1.23570 0.74431 1.05774 1.02702 1.86603 1.25270 1.32310 1.83734 1.21815 0.90628 0.81256 0.71958 1.90847 1.67941 1.36794 1.47477 1.22101 0.89270 1.00972 1.07568 1.23877 0.95074 0.98446 0.88693 1.19975 0.89544 0.98949 0.85364 0.89888 1.22127 1.01388 1.00885 0.97330 1.45908 1.15610 1.50624 1.24746 1.21145 0.81066 0.80382 0.87090 1.90768 1.55559 1.38546 1.60347 1.20542 0.92764 1.03254 0.95170 1.19269 0.94890 0.97543 1.02907 1.20886 0.94818 0.95419 0.96438 1.20449 0.91736 1.02214 1.08273 1.19955 0.85841 0.93818 0.94317 1.83933 1.11644 1.54745 1.63816 1.21786 0.85183 1.10048 1.32121 0.88267 1.26605 1.00186 0.97707 0.97599 1.70182 1.21219 1.24712 1.39844 0.84646 0.75202 0.77890 0.78441 1.17920 1.19480 1.18446 1.21237 0.98793 0.99449 1.06950 1.20938 0.90819 0.99263 0.96729 0.91757 0.91712 0.85211 0.82926 0.83707 0.93394 0.90338 0.90292 0.74353 0.85198 0.85093 0.83505 0.87108 0.91863 0.86562 0.84324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.57 113.37 1.20 1.46 16 2 O -0.36 -5.46 10.58 -57.10 -0.60 -6.06 16 3 C 0.50 8.14 7.91 70.11 0.55 8.69 16 4 O -0.54 -11.25 16.01 19.75 0.32 -10.93 16 5 C -0.18 -2.21 9.76 23.40 0.23 -1.99 16 6 C -0.04 -0.44 8.54 24.53 0.21 -0.23 16 7 C 0.17 2.25 2.94 44.24 0.13 2.38 16 8 H 0.08 1.48 7.26 -2.39 -0.02 1.47 16 9 C -0.16 -2.12 9.47 71.98 0.68 -1.43 16 10 N -0.71 -9.37 5.07 -446.08 -2.26 -11.63 16 11 C 0.52 11.12 7.79 87.66 0.68 11.80 16 12 O -0.57 -19.15 15.70 -3.03 -0.05 -19.20 16 13 C -0.08 -1.41 5.83 29.10 0.17 -1.24 16 14 C -0.15 -4.48 4.38 -19.83 -0.09 -4.56 16 15 C -0.06 -2.00 9.69 22.25 0.22 -1.78 16 16 C -0.21 -9.31 9.99 22.39 0.22 -9.09 16 17 C 0.11 5.80 6.65 22.58 0.15 5.96 16 18 O -0.23 -14.73 9.76 -22.68 -0.22 -14.95 16 19 C -0.42 -25.10 9.49 67.92 0.64 -24.46 16 20 H 0.10 5.52 5.20 -2.91 -0.02 5.50 16 21 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 22 N -0.92 -58.01 13.67 21.61 0.30 -57.72 16 23 Si 1.02 44.05 29.55 68.60 2.03 46.07 16 24 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 25 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 26 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 27 C -0.25 -11.22 9.17 22.39 0.21 -11.01 16 28 C -0.06 -2.11 9.69 22.25 0.22 -1.90 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.15 1.60 7.87 -2.91 -0.02 1.58 16 33 H 0.15 1.32 7.49 -2.91 -0.02 1.29 16 34 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.42 2.54 8.59 -92.71 -0.80 1.74 16 38 H 0.13 1.54 8.08 -2.39 -0.02 1.53 16 39 H 0.13 1.53 8.08 -2.39 -0.02 1.51 16 40 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 41 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 42 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 43 H 0.12 5.40 5.64 -2.91 -0.02 5.39 16 44 H 0.14 3.92 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -86.63 388.55 5.63 -81.00 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.23 Total: 21.75 kcal Atomic # 6 Polarization: -34.22 SS G_CDS: 5.89 Total: -28.33 kcal Atomic # 7 Polarization: -67.38 SS G_CDS: -1.97 Total: -69.35 kcal Atomic # 8 Polarization: -50.59 SS G_CDS: -0.56 Total: -51.14 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -86.63 5.63 -81.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347559922.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.670 kcal (2) G-P(sol) polarization free energy of solvation -86.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds