Wall clock time and date at job start Tue Mar 31 2020 18:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47403 * 2 1 4 4 C 1.50701 * 109.47265 * 120.00413 * 2 1 3 5 5 O 1.21286 * 120.00103 * 99.99737 * 4 2 1 6 6 N 1.34770 * 119.99815 * 279.99779 * 4 2 1 7 7 C 1.46503 * 120.00111 * 180.02562 * 6 4 2 8 8 C 1.53005 * 109.47328 * 179.97438 * 7 6 4 9 9 C 1.52999 * 109.47078 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.46962 * 180.02562 * 9 8 7 11 11 H 1.08004 * 120.00128 * 359.97438 * 10 9 8 12 12 C 1.37881 * 120.00142 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99630 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99976 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47344 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.46996 * 120.00078 * 14 12 10 17 17 H 1.48498 * 109.46959 * 239.99524 * 14 12 10 18 18 S 1.81408 * 109.46840 * 240.00197 * 2 1 3 19 19 O 1.42098 * 108.57629 * 177.11562 * 18 2 1 20 20 O 1.42101 * 108.57556 * 308.14122 * 18 2 1 21 21 C 1.81395 * 101.92109 * 62.62650 * 18 2 1 22 22 C 1.53182 * 109.54120 * 178.28687 * 21 18 2 23 23 C 1.53112 * 109.15501 * 183.24628 * 22 21 18 24 24 O 1.42896 * 109.48928 * 57.47061 * 23 22 21 25 25 C 1.42904 * 114.10319 * 298.89164 * 24 23 22 26 26 C 1.53099 * 109.41407 * 61.15419 * 25 24 23 27 27 H 1.09005 * 109.46679 * 302.27585 * 1 2 3 28 28 H 1.08997 * 109.47340 * 62.28059 * 1 2 3 29 29 H 1.09003 * 109.46963 * 182.28306 * 1 2 3 30 30 H 0.97003 * 120.00406 * 359.97438 * 6 4 2 31 31 H 1.08998 * 109.47159 * 300.00096 * 7 6 4 32 32 H 1.09005 * 109.47169 * 59.99824 * 7 6 4 33 33 H 1.08998 * 109.46742 * 299.99975 * 8 7 6 34 34 H 1.08997 * 109.46693 * 59.99851 * 8 7 6 35 35 H 1.08998 * 109.47203 * 300.00132 * 9 8 7 36 36 H 1.09002 * 109.46883 * 60.00112 * 9 8 7 37 37 H 0.97000 * 120.00180 * 180.02562 * 13 12 10 38 38 H 1.08993 * 109.54858 * 298.46608 * 21 18 2 39 39 H 1.08999 * 109.52404 * 303.06001 * 22 21 18 40 40 H 1.08994 * 109.52166 * 63.25043 * 22 21 18 41 41 H 1.09004 * 109.39881 * 297.49442 * 23 22 21 42 42 H 1.08995 * 109.49148 * 177.51220 * 23 22 21 43 43 H 1.08997 * 109.47686 * 301.17467 * 25 24 23 44 44 H 1.08997 * 109.48998 * 181.13874 * 25 24 23 45 45 H 1.08998 * 109.52283 * 182.48806 * 26 25 24 46 46 H 1.09003 * 109.56906 * 62.33396 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.4064 -1.8618 1.1556 6 7 2.0659 -0.0665 2.4138 7 6 2.5548 -0.7570 3.6099 8 6 2.4892 0.1912 4.8089 9 6 3.0004 -0.5297 6.0578 10 6 2.9351 0.4041 7.2389 11 1 2.5664 1.4112 7.1113 12 6 3.3472 -0.0269 8.4821 13 7 3.7967 -1.2530 8.6372 14 14 3.2670 1.1308 9.9458 15 1 2.7285 2.4441 9.5094 16 1 2.3794 0.5523 10.9863 17 1 4.6300 1.3164 10.5053 18 16 2.1346 -0.8551 -1.4812 19 8 3.5538 -0.7857 -1.4965 20 8 1.5011 -2.1246 -1.5613 21 6 1.4901 0.1972 -2.8107 22 6 1.9439 -0.3539 -4.1660 23 6 1.4640 0.5849 -5.2763 24 8 1.9744 1.8991 -5.0432 25 6 1.5430 2.4829 -3.8122 26 6 2.0279 1.6217 -2.6430 27 1 -0.3633 0.5488 0.8689 28 1 -0.3634 0.4780 -0.9097 29 1 -0.3633 -1.0269 0.0409 30 1 1.7671 0.8544 2.4736 31 1 1.9341 -1.6318 3.8036 32 1 3.5865 -1.0714 3.4518 33 1 3.1102 1.0657 4.6148 34 1 1.4577 0.5059 4.9671 35 1 2.3798 -1.4045 6.2520 36 1 4.0320 -0.8440 5.8992 37 1 4.0863 -1.5564 9.5119 38 1 0.4010 0.2115 -2.7691 39 1 3.0319 -0.4159 -4.1882 40 1 1.5185 -1.3459 -4.3168 41 1 0.3744 0.6136 -5.2803 42 1 1.8217 0.2216 -6.2396 43 1 0.4544 2.5364 -3.7972 44 1 1.9577 3.4867 -3.7207 45 1 1.6625 2.0410 -1.7056 46 1 3.1177 1.6007 -2.6324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001360151964.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:35 Heat of formation + Delta-G solvation = -173.358470 kcal Electronic energy + Delta-G solvation = -26994.848246 eV Core-core repulsion = 23011.339803 eV Total energy + Delta-G solvation = -3983.508443 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.94068 -39.83080 -37.28134 -36.26125 -35.64096 -34.83981 -33.81986 -33.22276 -31.75947 -31.12905 -27.05531 -26.11443 -25.28808 -24.31086 -23.06741 -21.37196 -20.96178 -20.30080 -18.99839 -18.00670 -17.42097 -16.91741 -16.63336 -16.41354 -16.19753 -16.06084 -15.49446 -15.35795 -15.17314 -14.65102 -14.51895 -14.47198 -14.24953 -13.83971 -13.49177 -13.06160 -12.96878 -12.51749 -12.45218 -12.35154 -12.29260 -12.21208 -12.02545 -11.92831 -11.80558 -11.66531 -11.58084 -11.04544 -10.96410 -10.82635 -10.76832 -10.63013 -10.23885 -9.99305 -9.95341 -9.49264 -9.16195 -9.01819 -8.41624 -6.05755 -4.09244 -0.48792 2.28856 2.38664 2.83424 3.27060 3.29549 3.34644 3.37579 3.42319 3.49072 3.81111 3.87922 4.17516 4.23213 4.30034 4.40532 4.44126 4.49813 4.57875 4.74383 4.81529 4.84030 4.91981 4.97810 5.07804 5.09174 5.26461 5.30081 5.34066 5.43869 5.53253 5.57207 5.67023 6.05546 6.26009 6.49633 6.59310 6.67612 6.90795 7.35777 7.58606 7.70105 7.92257 8.00272 8.32876 8.97437 9.55182 11.05512 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.027613 B = 0.002076 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.785191 B =13482.663697 C =13987.102534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.618 4.618 3 H 0.155 0.845 4 C 0.537 3.463 5 O -0.529 6.529 6 N -0.709 5.709 7 C 0.111 3.889 8 C -0.121 4.121 9 C 0.023 3.977 10 C -0.523 4.523 11 H 0.056 0.944 12 C 0.056 3.944 13 N -0.892 5.892 14 Si 0.894 3.106 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 S 2.449 3.551 19 O -0.919 6.919 20 O -0.910 6.910 21 C -0.583 4.583 22 C -0.144 4.144 23 C 0.070 3.930 24 O -0.378 6.378 25 C 0.069 3.931 26 C -0.150 4.150 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.402 0.598 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.020 0.980 36 H 0.020 0.980 37 H 0.261 0.739 38 H 0.141 0.859 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.056 0.944 42 H 0.104 0.896 43 H 0.056 0.944 44 H 0.103 0.897 45 H 0.089 0.911 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.372 8.404 -28.748 31.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.727 4.727 3 H 0.173 0.827 4 C 0.319 3.681 5 O -0.407 6.407 6 N -0.358 5.358 7 C -0.011 4.011 8 C -0.159 4.159 9 C -0.015 4.015 10 C -0.561 4.561 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.531 5.531 14 Si 0.722 3.278 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 S 2.627 3.373 19 O -0.916 6.916 20 O -0.907 6.907 21 C -0.691 4.691 22 C -0.183 4.183 23 C -0.008 4.008 24 O -0.297 6.297 25 C -0.009 4.009 26 C -0.189 4.189 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.236 0.764 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.038 0.962 36 H 0.039 0.961 37 H 0.071 0.929 38 H 0.159 0.841 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.075 0.925 42 H 0.122 0.878 43 H 0.074 0.926 44 H 0.121 0.879 45 H 0.108 0.892 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.406 6.766 -28.779 30.735 hybrid contribution -0.859 1.674 1.381 2.334 sum -9.265 8.440 -27.398 30.128 Atomic orbital electron populations 1.21606 0.87515 1.05471 1.04857 1.30721 1.09107 1.15546 1.17313 0.82731 1.19075 0.78688 0.86431 0.83869 1.90873 1.48006 1.16490 1.85311 1.46066 1.64675 1.16761 1.08336 1.21836 0.99899 0.96503 0.82879 1.21906 1.01178 0.98064 0.94708 1.19044 0.96704 0.95779 0.89957 1.21214 1.42956 0.98731 0.93230 0.92596 1.25043 0.95249 0.95183 0.99063 1.69973 1.43110 1.16427 1.23613 0.86512 0.77713 0.80959 0.82641 1.19790 1.20987 1.20970 1.07807 0.76140 0.76545 0.76808 1.93582 1.26387 1.86401 1.85213 1.93577 1.77704 1.34705 1.84757 1.30405 1.12534 1.10995 1.15181 1.22061 1.03676 1.00736 0.91846 1.22509 0.98215 0.82260 0.97781 1.87974 1.73032 1.30045 1.38607 1.22506 0.98956 0.96546 0.82890 1.22185 1.03581 0.91794 1.01292 0.89430 0.90380 0.89559 0.76411 0.91173 0.91115 0.92568 0.92615 0.96183 0.96141 0.92916 0.84087 0.89003 0.88764 0.92532 0.87844 0.92576 0.87909 0.89209 0.88488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 8.96 37.16 0.33 -0.52 16 2 C -0.62 -5.59 2.67 -27.88 -0.07 -5.67 16 3 H 0.15 0.75 6.79 -51.93 -0.35 0.40 16 4 C 0.54 7.79 7.00 -10.99 -0.08 7.71 16 5 O -0.53 -10.25 15.76 0.89 0.01 -10.23 16 6 N -0.71 -9.57 5.56 -60.29 -0.33 -9.91 16 7 C 0.11 1.90 5.67 -4.04 -0.02 1.88 16 8 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 11 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 12 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 13 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 14 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 15 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 S 2.45 27.13 3.15 -107.50 -0.34 26.79 16 19 O -0.92 -13.59 17.90 -57.83 -1.03 -14.63 16 20 O -0.91 -13.30 17.50 -61.50 -1.08 -14.37 16 21 C -0.58 -3.53 2.26 -26.54 -0.06 -3.59 16 22 C -0.14 -0.93 5.44 -26.58 -0.14 -1.07 16 23 C 0.07 0.38 6.84 37.22 0.25 0.63 16 24 O -0.38 -2.73 10.77 -35.23 -0.38 -3.11 16 25 C 0.07 0.33 6.84 37.21 0.25 0.58 16 26 C -0.15 -0.74 5.10 -26.59 -0.14 -0.87 16 27 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.19 6.61 -51.93 -0.34 -0.15 16 29 H 0.09 0.68 8.07 -51.93 -0.42 0.26 16 30 H 0.40 3.97 8.47 -40.82 -0.35 3.62 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.14 0.43 6.97 -51.93 -0.36 0.07 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 44 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.09 0.18 6.63 -51.93 -0.34 -0.16 16 46 H 0.10 0.58 8.01 -51.93 -0.42 0.17 16 LS Contribution 383.81 15.07 5.78 5.78 Total: -1.00 -39.08 383.81 -9.63 -48.71 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -7.62 Total: -3.30 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -0.36 Total: -16.11 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.40 Total: -35.78 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -2.48 Total: -42.34 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 27.13 SS G_CDS: -0.34 Total: 26.79 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -39.08 -9.63 -48.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001360151964.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.645 kcal (2) G-P(sol) polarization free energy of solvation -39.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds