Wall clock time and date at job start Tue Mar 31 2020 18:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47403 * 2 1 4 4 C 1.50701 * 109.47265 * 120.00413 * 2 1 3 5 5 O 1.21286 * 120.00103 * 99.99737 * 4 2 1 6 6 N 1.34770 * 119.99815 * 279.99779 * 4 2 1 7 7 C 1.46503 * 120.00111 * 180.02562 * 6 4 2 8 8 C 1.53005 * 109.47328 * 179.97438 * 7 6 4 9 9 C 1.52999 * 109.47078 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.46962 * 180.02562 * 9 8 7 11 11 H 1.08004 * 120.00128 * 359.97438 * 10 9 8 12 12 C 1.37881 * 120.00142 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99630 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99976 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47344 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.46996 * 120.00078 * 14 12 10 17 17 H 1.48498 * 109.46959 * 239.99524 * 14 12 10 18 18 S 1.81408 * 109.46840 * 240.00197 * 2 1 3 19 19 O 1.42098 * 108.57629 * 177.11562 * 18 2 1 20 20 O 1.42101 * 108.57556 * 308.14122 * 18 2 1 21 21 C 1.81395 * 101.92109 * 62.62650 * 18 2 1 22 22 C 1.53182 * 109.54120 * 178.28687 * 21 18 2 23 23 C 1.53112 * 109.15501 * 183.24628 * 22 21 18 24 24 O 1.42896 * 109.48928 * 57.47061 * 23 22 21 25 25 C 1.42904 * 114.10319 * 298.89164 * 24 23 22 26 26 C 1.53099 * 109.41407 * 61.15419 * 25 24 23 27 27 H 1.09005 * 109.46679 * 302.27585 * 1 2 3 28 28 H 1.08997 * 109.47340 * 62.28059 * 1 2 3 29 29 H 1.09003 * 109.46963 * 182.28306 * 1 2 3 30 30 H 0.97003 * 120.00406 * 359.97438 * 6 4 2 31 31 H 1.08998 * 109.47159 * 300.00096 * 7 6 4 32 32 H 1.09005 * 109.47169 * 59.99824 * 7 6 4 33 33 H 1.08998 * 109.46742 * 299.99975 * 8 7 6 34 34 H 1.08997 * 109.46693 * 59.99851 * 8 7 6 35 35 H 1.08998 * 109.47203 * 300.00132 * 9 8 7 36 36 H 1.09002 * 109.46883 * 60.00112 * 9 8 7 37 37 H 0.97000 * 120.00180 * 180.02562 * 13 12 10 38 38 H 1.08993 * 109.54858 * 298.46608 * 21 18 2 39 39 H 1.08999 * 109.52404 * 303.06001 * 22 21 18 40 40 H 1.08994 * 109.52166 * 63.25043 * 22 21 18 41 41 H 1.09004 * 109.39881 * 297.49442 * 23 22 21 42 42 H 1.08995 * 109.49148 * 177.51220 * 23 22 21 43 43 H 1.08997 * 109.47686 * 301.17467 * 25 24 23 44 44 H 1.08997 * 109.48998 * 181.13874 * 25 24 23 45 45 H 1.08998 * 109.52283 * 182.48806 * 26 25 24 46 46 H 1.09003 * 109.56906 * 62.33396 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.4064 -1.8618 1.1556 6 7 2.0659 -0.0665 2.4138 7 6 2.5548 -0.7570 3.6099 8 6 2.4892 0.1912 4.8089 9 6 3.0004 -0.5297 6.0578 10 6 2.9351 0.4041 7.2389 11 1 2.5664 1.4112 7.1113 12 6 3.3472 -0.0269 8.4821 13 7 3.7967 -1.2530 8.6372 14 14 3.2670 1.1308 9.9458 15 1 2.7285 2.4441 9.5094 16 1 2.3794 0.5523 10.9863 17 1 4.6300 1.3164 10.5053 18 16 2.1346 -0.8551 -1.4812 19 8 3.5538 -0.7857 -1.4965 20 8 1.5011 -2.1246 -1.5613 21 6 1.4901 0.1972 -2.8107 22 6 1.9439 -0.3539 -4.1660 23 6 1.4640 0.5849 -5.2763 24 8 1.9744 1.8991 -5.0432 25 6 1.5430 2.4829 -3.8122 26 6 2.0279 1.6217 -2.6430 27 1 -0.3633 0.5488 0.8689 28 1 -0.3634 0.4780 -0.9097 29 1 -0.3633 -1.0269 0.0409 30 1 1.7671 0.8544 2.4736 31 1 1.9341 -1.6318 3.8036 32 1 3.5865 -1.0714 3.4518 33 1 3.1102 1.0657 4.6148 34 1 1.4577 0.5059 4.9671 35 1 2.3798 -1.4045 6.2520 36 1 4.0320 -0.8440 5.8992 37 1 4.0863 -1.5564 9.5119 38 1 0.4010 0.2115 -2.7691 39 1 3.0319 -0.4159 -4.1882 40 1 1.5185 -1.3459 -4.3168 41 1 0.3744 0.6136 -5.2803 42 1 1.8217 0.2216 -6.2396 43 1 0.4544 2.5364 -3.7972 44 1 1.9577 3.4867 -3.7207 45 1 1.6625 2.0410 -1.7056 46 1 3.1177 1.6007 -2.6324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001360151964.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:34 Heat of formation + Delta-G solvation = -205.556956 kcal Electronic energy + Delta-G solvation = -26996.244477 eV Core-core repulsion = 23011.339803 eV Total energy + Delta-G solvation = -3984.904674 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.13689 -40.23236 -38.20850 -37.25059 -37.07389 -35.52140 -35.17193 -34.37767 -32.86907 -32.08848 -28.75147 -26.62937 -26.15918 -24.97919 -24.47872 -22.43175 -21.99449 -21.50135 -19.82795 -18.86176 -18.66227 -18.12884 -17.68250 -17.14437 -16.98017 -16.90103 -16.57043 -16.45717 -16.26541 -15.74254 -15.65686 -15.27722 -14.98605 -14.80803 -14.33141 -14.17377 -13.80764 -13.72478 -13.49080 -13.40146 -13.25567 -13.19262 -13.04387 -12.99956 -12.79786 -12.58676 -12.40953 -12.38694 -12.16180 -12.01360 -11.73102 -11.70867 -11.68175 -11.30257 -11.19082 -11.07398 -10.57899 -10.43589 -10.31884 -8.20856 -6.32608 -1.27112 1.23627 1.41295 1.41635 1.54683 1.58917 1.80904 2.40898 2.66944 2.82223 2.99534 3.13197 3.26775 3.31000 3.36303 3.68369 3.80891 3.90217 3.96716 4.08219 4.15024 4.24792 4.36857 4.49184 4.49864 4.51547 4.54678 4.61622 4.63587 4.81469 4.88005 4.88376 4.88894 5.02238 5.07080 5.13491 5.14457 5.26126 5.49747 5.67451 5.82314 6.18297 6.25722 6.27240 6.85388 6.94808 7.37277 8.91539 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.027613 B = 0.002076 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.785191 B =13482.663697 C =13987.102534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.600 4.600 3 H 0.205 0.795 4 C 0.525 3.475 5 O -0.589 6.589 6 N -0.693 5.693 7 C 0.121 3.879 8 C -0.100 4.100 9 C 0.020 3.980 10 C -0.538 4.538 11 H 0.070 0.930 12 C -0.007 4.007 13 N -0.936 5.936 14 Si 0.969 3.031 15 H -0.256 1.256 16 H -0.281 1.281 17 H -0.282 1.282 18 S 2.417 3.583 19 O -0.977 6.977 20 O -0.965 6.965 21 C -0.543 4.543 22 C -0.157 4.157 23 C 0.071 3.929 24 O -0.404 6.404 25 C 0.063 3.937 26 C -0.159 4.159 27 H 0.107 0.893 28 H 0.128 0.872 29 H 0.062 0.938 30 H 0.424 0.576 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.075 0.925 35 H -0.008 1.008 36 H -0.010 1.010 37 H 0.263 0.737 38 H 0.186 0.814 39 H 0.072 0.928 40 H 0.099 0.901 41 H 0.081 0.919 42 H 0.110 0.890 43 H 0.083 0.917 44 H 0.115 0.885 45 H 0.129 0.871 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.115 12.720 -29.771 34.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.710 4.710 3 H 0.222 0.778 4 C 0.310 3.690 5 O -0.470 6.470 6 N -0.345 5.345 7 C -0.003 4.003 8 C -0.138 4.138 9 C -0.017 4.017 10 C -0.576 4.576 11 H 0.088 0.912 12 C -0.204 4.204 13 N -0.577 5.577 14 Si 0.794 3.206 15 H -0.179 1.179 16 H -0.207 1.207 17 H -0.208 1.208 18 S 2.604 3.396 19 O -0.974 6.974 20 O -0.962 6.962 21 C -0.656 4.656 22 C -0.197 4.197 23 C -0.007 4.007 24 O -0.323 6.323 25 C -0.015 4.015 26 C -0.197 4.197 27 H 0.126 0.874 28 H 0.147 0.853 29 H 0.081 0.919 30 H 0.262 0.738 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.010 0.990 36 H 0.008 0.992 37 H 0.071 0.929 38 H 0.203 0.797 39 H 0.091 0.909 40 H 0.118 0.882 41 H 0.099 0.901 42 H 0.128 0.872 43 H 0.101 0.899 44 H 0.133 0.867 45 H 0.148 0.852 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.142 11.087 -29.789 33.682 hybrid contribution -0.014 0.350 1.622 1.660 sum -11.156 11.437 -28.167 32.383 Atomic orbital electron populations 1.21863 0.84669 1.05126 1.08458 1.30607 1.11202 1.16760 1.12449 0.77775 1.20019 0.77531 0.86027 0.85406 1.90856 1.50324 1.19440 1.86364 1.45771 1.64128 1.17555 1.07028 1.21409 0.98696 0.96080 0.84101 1.21600 1.02159 0.97798 0.92223 1.18972 0.94702 0.95290 0.92763 1.21700 1.42365 0.99521 0.94014 0.91209 1.26073 0.94855 0.96863 1.02639 1.70127 1.44397 1.18676 1.24470 0.85332 0.77715 0.79167 0.78401 1.17917 1.20659 1.20757 1.08320 0.75296 0.77326 0.78676 1.93509 1.29999 1.87498 1.86412 1.93508 1.77883 1.38927 1.85883 1.30115 1.14641 1.09794 1.11089 1.22227 1.02837 1.01826 0.92767 1.22628 0.99522 0.81242 0.97290 1.87950 1.73815 1.30614 1.39941 1.22765 1.00637 0.96652 0.81427 1.22414 1.02876 0.90715 1.03707 0.87428 0.85317 0.91889 0.73764 0.92754 0.93179 0.90932 0.90664 0.98984 0.99164 0.92851 0.79667 0.90939 0.88240 0.90123 0.87188 0.89923 0.86738 0.85246 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.96 71.98 0.64 -0.55 16 2 C -0.60 -9.33 2.67 29.85 0.08 -9.25 16 3 H 0.21 0.95 6.79 -2.39 -0.02 0.93 16 4 C 0.52 15.09 7.00 87.66 0.61 15.71 16 5 O -0.59 -24.15 15.76 1.41 0.02 -24.13 16 6 N -0.69 -17.83 5.56 -463.04 -2.57 -20.41 16 7 C 0.12 4.24 5.67 86.38 0.49 4.73 16 8 C -0.10 -3.69 5.27 30.60 0.16 -3.53 16 9 C 0.02 1.05 4.97 29.85 0.15 1.20 16 10 C -0.54 -29.54 9.11 25.60 0.23 -29.31 16 11 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 12 C -0.01 -0.39 5.46 84.66 0.46 0.07 16 13 N -0.94 -57.28 13.29 21.45 0.28 -56.99 16 14 Si 0.97 43.37 29.54 68.60 2.03 45.39 16 15 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 16 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 17 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 18 S 2.42 53.29 3.15 -56.49 -0.18 53.11 16 19 O -0.98 -30.81 17.90 -127.37 -2.28 -33.09 16 20 O -0.97 -29.75 17.50 -123.87 -2.17 -31.92 16 21 C -0.54 -4.90 2.26 30.71 0.07 -4.83 16 22 C -0.16 -1.81 5.44 30.69 0.17 -1.64 16 23 C 0.07 0.56 6.84 72.02 0.49 1.05 16 24 O -0.40 -4.65 10.77 -148.98 -1.60 -6.25 16 25 C 0.06 0.31 6.84 72.02 0.49 0.80 16 26 C -0.16 -0.91 5.10 30.69 0.16 -0.75 16 27 H 0.11 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.13 -0.23 6.61 -2.39 -0.02 -0.25 16 29 H 0.06 0.88 8.07 -2.39 -0.02 0.86 16 30 H 0.42 6.90 8.47 -92.71 -0.79 6.12 16 31 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 35 H -0.01 -0.47 8.14 -2.39 -0.02 -0.48 16 36 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 37 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 38 H 0.19 0.05 6.97 -2.39 -0.02 0.03 16 39 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.08 0.00 8.14 -2.39 -0.02 -0.02 16 44 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.13 -0.31 6.63 -2.39 -0.02 -0.32 16 46 H 0.08 0.80 8.01 -2.39 -0.02 0.78 16 Total: -1.00 -94.16 383.81 -2.07 -96.23 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: 0.19 Total: 4.36 kcal Atomic # 6 Polarization: -30.51 SS G_CDS: 4.21 Total: -26.30 kcal Atomic # 7 Polarization: -75.11 SS G_CDS: -2.29 Total: -77.40 kcal Atomic # 8 Polarization: -89.36 SS G_CDS: -6.03 Total: -95.39 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: 53.29 SS G_CDS: -0.18 Total: 53.11 kcal Total: -94.16 -2.07 -96.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001360151964.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.330 kcal (2) G-P(sol) polarization free energy of solvation -94.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds