Wall clock time and date at job start Tue Mar 31 2020 18:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34228 * 116.99991 * 2 1 4 4 O 1.20822 * 120.00023 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99978 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.81090 * 230.66974 * 5 3 2 7 7 C 1.53311 * 109.91806 * 351.69684 * 5 3 2 8 8 C 1.50616 * 110.82774 * 167.21980 * 7 5 3 9 9 C 1.39026 * 117.55959 * 160.36838 * 8 7 5 10 10 C 1.37811 * 120.66116 * 178.81158 * 9 8 7 11 11 C 1.38760 * 119.77083 * 0.02562 * 10 9 8 12 12 O 1.35901 * 120.20294 * 180.24282 * 11 10 9 13 13 C 1.38451 * 119.59628 * 0.26757 * 11 10 9 14 14 C 1.37719 * 122.83157 * 339.64790 * 8 7 5 15 15 C 1.50817 * 122.34471 * 1.52424 * 14 8 7 16 16 N 1.46674 * 109.68433 * 348.41661 * 15 14 8 17 17 C 1.34774 * 121.33448 * 224.41242 * 16 15 14 18 18 O 1.21283 * 120.00012 * 185.89669 * 17 16 15 19 19 C 1.50699 * 120.00552 * 5.89465 * 17 16 15 20 20 H 1.09004 * 109.46706 * 327.90071 * 19 17 16 21 21 C 1.53002 * 109.47078 * 87.89836 * 19 17 16 22 22 C 1.50698 * 109.47444 * 207.89699 * 19 17 16 23 23 H 1.08001 * 119.99784 * 0.02562 * 22 19 17 24 24 C 1.37879 * 120.00010 * 179.72311 * 22 19 17 25 25 N 1.31518 * 119.99762 * 0.27333 * 24 22 19 26 26 Si 1.86798 * 119.99963 * 180.28132 * 24 22 19 27 27 H 1.48495 * 109.47507 * 59.99603 * 26 24 22 28 28 H 1.48507 * 109.47101 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.46594 * 299.99624 * 26 24 22 30 30 H 1.08998 * 109.47130 * 299.99736 * 1 2 3 31 31 H 1.08993 * 109.47170 * 59.99889 * 1 2 3 32 32 H 1.09000 * 109.47082 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.32068 * 46.80726 * 7 5 3 34 34 H 1.09005 * 109.11160 * 287.49646 * 7 5 3 35 35 H 1.08000 * 119.66974 * 358.80456 * 9 8 7 36 36 H 1.08000 * 120.11249 * 180.02562 * 10 9 8 37 37 H 0.96698 * 113.99682 * 270.02381 * 12 11 10 38 38 H 1.08002 * 119.76760 * 179.97438 * 13 11 10 39 39 H 1.09006 * 109.43242 * 228.35559 * 15 14 8 40 40 H 1.08997 * 109.40137 * 108.46159 * 15 14 8 41 41 H 1.09005 * 109.46823 * 291.12050 * 21 19 17 42 42 H 1.08991 * 109.47406 * 51.12329 * 21 19 17 43 43 H 1.08998 * 109.47276 * 171.12781 * 21 19 17 44 44 H 0.97000 * 119.99505 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9009 1.9434 0.7938 7 6 4.1625 -0.1221 0.2093 8 6 5.6380 -0.1254 -0.0931 9 6 6.3996 -1.1639 0.4306 10 6 7.7512 -1.2429 0.1736 11 6 8.3603 -0.2772 -0.6150 12 8 9.6917 -0.3494 -0.8780 13 6 7.6036 0.7606 -1.1317 14 6 6.2435 0.8389 -0.8679 15 6 5.4804 2.0011 -1.4522 16 7 4.0395 1.7716 -1.3021 17 6 3.1824 2.0111 -2.3143 18 8 1.9872 1.9158 -2.1322 19 6 3.7092 2.3972 -3.6724 20 1 4.6308 2.9675 -3.5559 21 6 3.9908 1.1339 -4.4883 22 6 2.6845 3.2392 -4.3879 23 1 1.7458 3.4718 -3.9071 24 6 2.9478 3.7178 -5.6539 25 7 4.0912 3.4350 -6.2391 26 14 1.6808 4.7680 -6.5376 27 1 1.4093 5.9914 -5.7409 28 1 2.2019 5.1525 -7.8741 29 1 0.4238 3.9944 -6.7008 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.6601 -0.8307 -0.4493 34 1 4.0082 -0.4249 1.2450 35 1 5.9273 -1.9161 1.0450 36 1 8.3344 -2.0538 0.5846 37 1 10.2455 0.1116 -0.2332 38 1 8.0749 1.5140 -1.7455 39 1 5.7237 2.0996 -2.5102 40 1 5.7583 2.9162 -0.9294 41 1 4.8401 0.6043 -4.0564 42 1 3.1132 0.4878 -4.4720 43 1 4.2200 1.4097 -5.5176 44 1 4.2763 3.7714 -7.1298 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363958904.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:01 Heat of formation + Delta-G solvation = -123.522649 kcal Electronic energy + Delta-G solvation = -29915.407432 eV Core-core repulsion = 25798.616081 eV Total energy + Delta-G solvation = -4116.791351 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.94640 -39.81565 -38.73167 -37.40170 -35.91506 -35.21063 -33.96703 -32.90404 -31.17722 -30.38078 -29.35666 -27.22577 -25.74798 -25.22071 -24.48836 -22.83245 -22.25205 -21.06175 -20.59663 -18.80236 -18.08662 -17.13401 -16.75987 -16.48931 -16.10945 -15.90204 -15.61366 -15.28681 -15.13106 -15.04156 -14.64864 -14.32913 -13.77035 -13.61666 -13.25362 -13.03118 -12.91270 -12.78773 -12.64257 -12.52333 -12.28825 -11.90194 -11.61048 -11.56158 -11.44907 -11.27600 -11.02680 -10.72827 -10.67500 -10.62044 -10.35012 -10.34025 -10.03461 -9.88331 -9.07893 -8.93304 -8.63560 -8.47295 -8.39138 -8.29115 -6.07195 -4.11364 1.12150 1.22068 2.49352 3.04325 3.34776 3.37111 3.39855 3.46308 3.49871 3.55093 4.07409 4.43775 4.51854 4.58133 4.78926 4.86252 5.04501 5.12858 5.22906 5.25437 5.35290 5.37980 5.44984 5.51699 5.60870 5.66553 5.78982 5.82370 5.84336 5.90348 6.03611 6.22488 6.30728 6.47640 6.57993 6.64076 6.72670 6.81851 6.85030 6.93299 7.32161 7.52652 7.70878 7.81376 8.01734 8.25879 8.26362 8.93315 9.00502 9.53512 10.99632 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.010068 B = 0.004791 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.554343 B = 5842.889060 C = 8146.055055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.362 6.362 3 C 0.480 3.520 4 O -0.487 6.487 5 C 0.155 3.845 6 H 0.111 0.889 7 C -0.089 4.089 8 C -0.075 4.075 9 C -0.102 4.102 10 C -0.146 4.146 11 C 0.101 3.899 12 O -0.499 6.499 13 C -0.135 4.135 14 C -0.071 4.071 15 C 0.150 3.850 16 N -0.618 5.618 17 C 0.524 3.476 18 O -0.513 6.513 19 C 0.038 3.962 20 H 0.049 0.951 21 C -0.131 4.131 22 C -0.501 4.501 23 H 0.069 0.931 24 C 0.061 3.939 25 N -0.894 5.894 26 Si 0.901 3.099 27 H -0.276 1.276 28 H -0.287 1.287 29 H -0.276 1.276 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.388 0.612 38 H 0.133 0.867 39 H 0.118 0.882 40 H 0.082 0.918 41 H 0.015 0.985 42 H 0.030 0.970 43 H 0.098 0.902 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.889 -9.104 15.556 19.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.279 6.279 3 C 0.322 3.678 4 O -0.372 6.372 5 C 0.050 3.950 6 H 0.129 0.871 7 C -0.127 4.127 8 C -0.076 4.076 9 C -0.120 4.120 10 C -0.165 4.165 11 C 0.057 3.943 12 O -0.308 6.308 13 C -0.154 4.154 14 C -0.072 4.072 15 C 0.028 3.972 16 N -0.357 5.357 17 C 0.317 3.683 18 O -0.388 6.388 19 C 0.017 3.983 20 H 0.066 0.934 21 C -0.189 4.189 22 C -0.539 4.539 23 H 0.087 0.913 24 C -0.140 4.140 25 N -0.533 5.533 26 Si 0.729 3.271 27 H -0.202 1.202 28 H -0.213 1.213 29 H -0.201 1.201 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.243 0.757 38 H 0.151 0.849 39 H 0.136 0.864 40 H 0.100 0.900 41 H 0.034 0.966 42 H 0.049 0.951 43 H 0.117 0.883 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.857 -9.128 14.953 18.813 hybrid contribution -0.411 0.816 -0.108 0.920 sum 6.446 -8.312 14.846 18.195 Atomic orbital electron populations 1.23115 0.76676 1.02688 1.02552 1.86369 1.23138 1.33483 1.84949 1.22522 0.90491 0.81899 0.72871 1.90666 1.66150 1.36143 1.44241 1.20822 0.88036 0.96710 0.89418 0.87106 1.20931 0.91617 0.96836 1.03311 1.19474 0.95207 0.95038 0.97854 1.21004 0.93265 0.97744 0.99977 1.21293 0.95524 0.99978 0.99666 1.18306 0.83942 0.94762 0.97312 1.84851 1.14325 1.77820 1.53834 1.21310 0.93595 0.98820 1.01662 1.19813 0.93525 0.96691 0.97163 1.20636 0.78494 0.94548 1.03536 1.48466 1.07633 1.69125 1.10501 1.22299 0.86063 0.73553 0.86413 1.90593 1.15937 1.51008 1.81219 1.18895 0.98216 0.95664 0.85495 0.93376 1.21713 0.97352 0.95483 1.04347 1.21009 1.02324 1.30122 1.00436 0.91320 1.24914 0.95657 0.96298 0.97131 1.69849 1.22804 1.45530 1.15141 0.86498 0.81549 0.80694 0.78392 1.20167 1.21260 1.20145 0.92653 0.91455 0.88861 0.88552 0.89270 0.85568 0.85567 0.75698 0.84868 0.86416 0.90004 0.96604 0.95124 0.88305 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 10.56 101.05 1.07 1.68 16 2 O -0.36 -5.99 9.20 -41.19 -0.38 -6.37 16 3 C 0.48 8.94 4.94 36.01 0.18 9.12 16 4 O -0.49 -10.90 14.87 -26.87 -0.40 -11.30 16 5 C 0.15 2.41 3.35 -68.52 -0.23 2.18 16 6 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 7 C -0.09 -1.11 4.81 -27.76 -0.13 -1.24 16 8 C -0.08 -0.92 5.77 -104.56 -0.60 -1.53 16 9 C -0.10 -1.05 9.58 -39.45 -0.38 -1.43 16 10 C -0.15 -1.49 9.99 -39.54 -0.40 -1.89 16 11 C 0.10 1.12 6.70 -39.31 -0.26 0.86 16 12 O -0.50 -4.93 13.51 -19.43 -0.26 -5.19 16 13 C -0.13 -1.61 9.56 -39.31 -0.38 -1.98 16 14 C -0.07 -0.92 5.82 -104.56 -0.61 -1.53 16 15 C 0.15 2.23 5.96 -5.04 -0.03 2.20 16 16 N -0.62 -11.21 2.93 -167.84 -0.49 -11.70 16 17 C 0.52 12.12 6.68 -10.99 -0.07 12.04 16 18 O -0.51 -13.40 11.61 -20.97 -0.24 -13.64 16 19 C 0.04 0.94 1.85 -92.92 -0.17 0.77 16 20 H 0.05 1.18 6.28 -51.93 -0.33 0.85 16 21 C -0.13 -3.10 9.02 37.16 0.34 -2.77 16 22 C -0.50 -14.16 8.32 -34.44 -0.29 -14.44 16 23 H 0.07 2.07 7.09 -52.49 -0.37 1.70 16 24 C 0.06 1.68 5.28 -17.82 -0.09 1.59 16 25 N -0.89 -24.74 11.30 55.43 0.63 -24.11 16 26 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 28 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 29 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 30 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 31 H 0.07 1.11 8.13 -51.93 -0.42 0.69 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.10 1.34 7.49 -51.93 -0.39 0.95 16 34 H 0.09 0.85 8.11 -51.93 -0.42 0.43 16 35 H 0.13 1.02 8.05 -52.49 -0.42 0.59 16 36 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.39 1.84 9.06 45.56 0.41 2.25 16 38 H 0.13 1.44 8.05 -52.49 -0.42 1.02 16 39 H 0.12 1.90 5.47 -51.93 -0.28 1.61 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.01 0.32 7.90 -51.93 -0.41 -0.09 16 42 H 0.03 0.73 8.12 -51.93 -0.42 0.31 16 43 H 0.10 2.55 5.90 -51.93 -0.31 2.25 16 44 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 361.05 15.07 5.44 5.44 Total: -1.00 -35.24 361.05 -7.82 -43.07 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -5.03 Total: 3.33 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -2.06 Total: 3.63 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.14 Total: -35.81 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -1.28 Total: -36.50 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.24 -7.82 -43.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363958904.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.455 kcal (2) G-P(sol) polarization free energy of solvation -35.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds