Wall clock time and date at job start Tue Mar 31 2020 18:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34228 * 116.99991 * 2 1 4 4 O 1.20822 * 120.00023 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99978 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.81090 * 230.66974 * 5 3 2 7 7 C 1.53311 * 109.91806 * 351.69684 * 5 3 2 8 8 C 1.50616 * 110.82774 * 167.21980 * 7 5 3 9 9 C 1.39026 * 117.55959 * 160.36838 * 8 7 5 10 10 C 1.37811 * 120.66116 * 178.81158 * 9 8 7 11 11 C 1.38760 * 119.77083 * 0.02562 * 10 9 8 12 12 O 1.35901 * 120.20294 * 180.24282 * 11 10 9 13 13 C 1.38451 * 119.59628 * 0.26757 * 11 10 9 14 14 C 1.37719 * 122.83157 * 339.64790 * 8 7 5 15 15 C 1.50817 * 122.34471 * 1.52424 * 14 8 7 16 16 N 1.46674 * 109.68433 * 348.41661 * 15 14 8 17 17 C 1.34774 * 121.33448 * 224.41242 * 16 15 14 18 18 O 1.21283 * 120.00012 * 185.89669 * 17 16 15 19 19 C 1.50699 * 120.00552 * 5.89465 * 17 16 15 20 20 H 1.09004 * 109.46706 * 327.90071 * 19 17 16 21 21 C 1.53002 * 109.47078 * 87.89836 * 19 17 16 22 22 C 1.50698 * 109.47444 * 207.89699 * 19 17 16 23 23 H 1.08001 * 119.99784 * 0.02562 * 22 19 17 24 24 C 1.37879 * 120.00010 * 179.72311 * 22 19 17 25 25 N 1.31518 * 119.99762 * 0.27333 * 24 22 19 26 26 Si 1.86798 * 119.99963 * 180.28132 * 24 22 19 27 27 H 1.48495 * 109.47507 * 59.99603 * 26 24 22 28 28 H 1.48507 * 109.47101 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.46594 * 299.99624 * 26 24 22 30 30 H 1.08998 * 109.47130 * 299.99736 * 1 2 3 31 31 H 1.08993 * 109.47170 * 59.99889 * 1 2 3 32 32 H 1.09000 * 109.47082 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.32068 * 46.80726 * 7 5 3 34 34 H 1.09005 * 109.11160 * 287.49646 * 7 5 3 35 35 H 1.08000 * 119.66974 * 358.80456 * 9 8 7 36 36 H 1.08000 * 120.11249 * 180.02562 * 10 9 8 37 37 H 0.96698 * 113.99682 * 270.02381 * 12 11 10 38 38 H 1.08002 * 119.76760 * 179.97438 * 13 11 10 39 39 H 1.09006 * 109.43242 * 228.35559 * 15 14 8 40 40 H 1.08997 * 109.40137 * 108.46159 * 15 14 8 41 41 H 1.09005 * 109.46823 * 291.12050 * 21 19 17 42 42 H 1.08991 * 109.47406 * 51.12329 * 21 19 17 43 43 H 1.08998 * 109.47276 * 171.12781 * 21 19 17 44 44 H 0.97000 * 119.99505 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9009 1.9434 0.7938 7 6 4.1625 -0.1221 0.2093 8 6 5.6380 -0.1254 -0.0931 9 6 6.3996 -1.1639 0.4306 10 6 7.7512 -1.2429 0.1736 11 6 8.3603 -0.2772 -0.6150 12 8 9.6917 -0.3494 -0.8780 13 6 7.6036 0.7606 -1.1317 14 6 6.2435 0.8389 -0.8679 15 6 5.4804 2.0011 -1.4522 16 7 4.0395 1.7716 -1.3021 17 6 3.1824 2.0111 -2.3143 18 8 1.9872 1.9158 -2.1322 19 6 3.7092 2.3972 -3.6724 20 1 4.6308 2.9675 -3.5559 21 6 3.9908 1.1339 -4.4883 22 6 2.6845 3.2392 -4.3879 23 1 1.7458 3.4718 -3.9071 24 6 2.9478 3.7178 -5.6539 25 7 4.0912 3.4350 -6.2391 26 14 1.6808 4.7680 -6.5376 27 1 1.4093 5.9914 -5.7409 28 1 2.2019 5.1525 -7.8741 29 1 0.4238 3.9944 -6.7008 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.6601 -0.8307 -0.4493 34 1 4.0082 -0.4249 1.2450 35 1 5.9273 -1.9161 1.0450 36 1 8.3344 -2.0538 0.5846 37 1 10.2455 0.1116 -0.2332 38 1 8.0749 1.5140 -1.7455 39 1 5.7237 2.0996 -2.5102 40 1 5.7583 2.9162 -0.9294 41 1 4.8401 0.6043 -4.0564 42 1 3.1132 0.4878 -4.4720 43 1 4.2200 1.4097 -5.5176 44 1 4.2763 3.7714 -7.1298 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363958904.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:00 Heat of formation + Delta-G solvation = -146.506810 kcal Electronic energy + Delta-G solvation = -29916.404100 eV Core-core repulsion = 25798.616081 eV Total energy + Delta-G solvation = -4117.788019 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.28969 -40.87745 -40.19905 -38.45708 -37.36735 -36.42604 -35.92950 -34.12527 -32.58284 -31.89311 -30.48759 -28.36986 -27.32338 -26.99326 -25.60693 -24.42070 -23.25016 -22.29867 -21.89054 -20.17473 -19.07780 -18.71046 -18.36660 -18.01651 -17.58117 -17.16235 -16.79130 -16.55882 -16.46046 -16.23365 -15.99965 -15.77464 -15.03115 -14.85719 -14.66075 -14.47031 -14.26761 -14.05227 -13.92288 -13.79172 -13.56303 -13.32153 -13.03448 -12.99551 -12.71310 -12.67433 -12.61657 -12.49109 -12.34907 -12.22307 -12.07082 -11.70657 -11.42289 -11.33515 -11.12914 -10.63602 -10.29643 -9.94534 -9.62456 -9.32686 -8.19548 -6.30621 0.27835 0.38358 1.07690 1.38066 1.39299 1.47827 1.68020 1.83618 2.06742 2.41677 2.64431 3.09582 3.29286 3.43469 3.55713 3.75308 3.94641 3.99339 4.07335 4.20089 4.27640 4.30836 4.33386 4.37706 4.56184 4.60677 4.63722 4.67976 4.73527 4.84596 4.89427 4.95293 5.05152 5.08879 5.24556 5.36805 5.38059 5.48933 5.51352 5.59415 5.64937 5.86345 5.92103 6.09749 6.36209 6.73424 6.83646 6.94550 7.25640 7.37840 8.85645 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.010068 B = 0.004791 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.554343 B = 5842.889060 C = 8146.055055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.359 6.359 3 C 0.477 3.523 4 O -0.533 6.533 5 C 0.150 3.850 6 H 0.137 0.863 7 C -0.077 4.077 8 C -0.088 4.088 9 C -0.094 4.094 10 C -0.144 4.144 11 C 0.102 3.898 12 O -0.509 6.509 13 C -0.146 4.146 14 C -0.083 4.083 15 C 0.148 3.852 16 N -0.612 5.612 17 C 0.521 3.479 18 O -0.554 6.554 19 C 0.036 3.964 20 H 0.048 0.952 21 C -0.115 4.115 22 C -0.528 4.528 23 H 0.038 0.962 24 C 0.026 3.974 25 N -0.905 5.905 26 Si 0.953 3.047 27 H -0.276 1.276 28 H -0.270 1.270 29 H -0.280 1.280 30 H 0.066 0.934 31 H 0.033 0.967 32 H 0.136 0.864 33 H 0.082 0.918 34 H 0.126 0.874 35 H 0.155 0.845 36 H 0.150 0.850 37 H 0.410 0.590 38 H 0.136 0.864 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.041 0.959 42 H 0.017 0.983 43 H 0.078 0.922 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.621 -10.741 17.165 22.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.275 6.275 3 C 0.321 3.679 4 O -0.421 6.421 5 C 0.046 3.954 6 H 0.154 0.846 7 C -0.114 4.114 8 C -0.088 4.088 9 C -0.111 4.111 10 C -0.162 4.162 11 C 0.057 3.943 12 O -0.323 6.323 13 C -0.165 4.165 14 C -0.084 4.084 15 C 0.027 3.973 16 N -0.349 5.349 17 C 0.313 3.687 18 O -0.432 6.432 19 C 0.015 3.985 20 H 0.066 0.934 21 C -0.173 4.173 22 C -0.567 4.567 23 H 0.056 0.944 24 C -0.174 4.174 25 N -0.544 5.544 26 Si 0.778 3.222 27 H -0.202 1.202 28 H -0.194 1.194 29 H -0.206 1.206 30 H 0.085 0.915 31 H 0.052 0.948 32 H 0.154 0.846 33 H 0.100 0.900 34 H 0.144 0.856 35 H 0.173 0.827 36 H 0.168 0.832 37 H 0.269 0.731 38 H 0.153 0.847 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.060 0.940 42 H 0.036 0.964 43 H 0.096 0.904 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.663 -10.785 16.594 21.604 hybrid contribution -0.865 1.278 -0.551 1.639 sum 7.798 -9.507 16.043 20.213 Atomic orbital electron populations 1.23355 0.75463 1.05129 1.01483 1.86367 1.24392 1.32455 1.84296 1.23161 0.91714 0.81665 0.71349 1.90636 1.67499 1.37694 1.46264 1.21195 0.86335 0.99456 0.88371 0.84610 1.20873 0.91495 0.93892 1.05187 1.19508 0.95025 0.95751 0.98518 1.21259 0.93203 0.97322 0.99347 1.21586 0.95690 1.00054 0.98892 1.18418 0.84479 0.94501 0.96884 1.84793 1.14035 1.78276 1.55154 1.21360 0.93294 0.99627 1.02221 1.19620 0.93830 0.96586 0.98326 1.20756 0.76647 0.96764 1.03132 1.48278 1.08462 1.67672 1.10488 1.21862 0.85913 0.73918 0.87055 1.90578 1.17483 1.52988 1.82160 1.18781 0.97232 0.95561 0.86885 0.93391 1.21496 0.97669 0.95053 1.03110 1.21100 1.02224 1.31866 1.01469 0.94362 1.25508 0.97346 0.97076 0.97436 1.69912 1.23498 1.45582 1.15390 0.85700 0.79364 0.79112 0.77996 1.20150 1.19445 1.20607 0.91498 0.94788 0.84632 0.90000 0.85615 0.82719 0.83226 0.73070 0.84659 0.88184 0.88152 0.93975 0.96427 0.90368 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.09 10.56 113.37 1.20 2.29 16 2 O -0.36 -11.70 9.20 -49.55 -0.46 -12.15 16 3 C 0.48 17.87 4.94 71.24 0.35 18.22 16 4 O -0.53 -24.67 14.87 29.75 0.44 -24.22 16 5 C 0.15 4.53 3.35 44.21 0.15 4.68 16 6 H 0.14 3.40 8.14 -2.39 -0.02 3.38 16 7 C -0.08 -1.72 4.81 29.93 0.14 -1.58 16 8 C -0.09 -1.90 5.77 -19.82 -0.11 -2.01 16 9 C -0.09 -1.55 9.58 22.36 0.21 -1.34 16 10 C -0.14 -2.37 9.99 22.29 0.22 -2.15 16 11 C 0.10 1.97 6.70 22.45 0.15 2.12 16 12 O -0.51 -8.60 13.51 -92.43 -1.25 -9.85 16 13 C -0.15 -3.21 9.56 22.45 0.21 -2.99 16 14 C -0.08 -2.01 5.82 -19.82 -0.12 -2.13 16 15 C 0.15 4.33 5.96 85.64 0.51 4.84 16 16 N -0.61 -22.25 2.93 -803.32 -2.35 -24.60 16 17 C 0.52 24.89 6.68 87.66 0.59 25.48 16 18 O -0.55 -30.32 11.61 22.33 0.26 -30.06 16 19 C 0.04 1.86 1.85 -12.29 -0.02 1.84 16 20 H 0.05 2.43 6.28 -2.38 -0.01 2.41 16 21 C -0.12 -5.58 9.02 71.98 0.65 -4.93 16 22 C -0.53 -31.10 8.32 25.60 0.21 -30.88 16 23 H 0.04 2.44 7.09 -2.91 -0.02 2.42 16 24 C 0.03 1.48 5.28 84.65 0.45 1.92 16 25 N -0.91 -50.55 11.30 21.45 0.24 -50.31 16 26 Si 0.95 45.48 29.54 68.60 2.03 47.51 16 27 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 28 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 29 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 30 H 0.07 1.69 8.13 -2.39 -0.02 1.68 16 31 H 0.03 1.17 8.13 -2.39 -0.02 1.15 16 32 H 0.14 2.55 8.14 -2.39 -0.02 2.54 16 33 H 0.08 2.11 7.49 -2.39 -0.02 2.09 16 34 H 0.13 1.89 8.11 -2.38 -0.02 1.87 16 35 H 0.16 1.67 8.05 -2.91 -0.02 1.65 16 36 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 37 H 0.41 2.65 9.06 -74.06 -0.67 1.98 16 38 H 0.14 2.79 8.05 -2.91 -0.02 2.77 16 39 H 0.10 3.27 5.47 -2.38 -0.01 3.25 16 40 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.04 1.76 7.90 -2.38 -0.02 1.74 16 42 H 0.02 0.84 8.12 -2.39 -0.02 0.82 16 43 H 0.08 4.12 5.90 -2.39 -0.01 4.10 16 44 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -79.50 361.05 4.08 -75.42 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.37 Total: 14.90 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 4.80 Total: 13.38 kcal Atomic # 7 Polarization: -72.80 SS G_CDS: -2.11 Total: -74.91 kcal Atomic # 8 Polarization: -75.28 SS G_CDS: -1.00 Total: -76.29 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -79.50 4.08 -75.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363958904.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.088 kcal (2) G-P(sol) polarization free energy of solvation -79.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds