Wall clock time and date at job start Tue Mar 31 2020 18:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34230 * 116.99891 * 2 1 4 4 O 1.20824 * 120.00078 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99572 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.75471 * 169.40727 * 5 3 2 7 7 C 1.52772 * 109.76876 * 48.67625 * 5 3 2 8 8 C 1.50621 * 110.86795 * 192.85637 * 7 5 3 9 9 C 1.39022 * 117.57447 * 199.91290 * 8 7 5 10 10 C 1.37811 * 120.66005 * 181.23120 * 9 8 7 11 11 C 1.38765 * 119.76477 * 359.96864 * 10 9 8 12 12 O 1.35906 * 120.19741 * 179.75916 * 11 10 9 13 13 C 1.38443 * 119.60116 * 359.72948 * 11 10 9 14 14 C 1.37714 * 122.81805 * 20.60071 * 8 7 5 15 15 C 1.50826 * 122.33356 * 357.85216 * 14 8 7 16 16 N 1.46679 * 109.68444 * 12.03392 * 15 14 8 17 17 C 1.34776 * 121.32068 * 135.47631 * 16 15 14 18 18 O 1.21285 * 119.99638 * 185.30718 * 17 16 15 19 19 C 1.50697 * 120.00109 * 5.30389 * 17 16 15 20 20 H 1.08999 * 109.47260 * 56.68435 * 19 17 16 21 21 C 1.53000 * 109.47114 * 296.67849 * 19 17 16 22 22 C 1.50703 * 109.46802 * 176.68254 * 19 17 16 23 23 H 1.08001 * 120.00449 * 359.97438 * 22 19 17 24 24 C 1.37880 * 119.99818 * 180.02562 * 22 19 17 25 25 N 1.31518 * 120.00222 * 359.97438 * 24 22 19 26 26 Si 1.86804 * 120.00007 * 179.97438 * 24 22 19 27 27 H 1.48497 * 109.47066 * 89.99607 * 26 24 22 28 28 H 1.48498 * 109.46946 * 209.99387 * 26 24 22 29 29 H 1.48496 * 109.46901 * 329.99454 * 26 24 22 30 30 H 1.08996 * 109.46846 * 59.99945 * 1 2 3 31 31 H 1.08994 * 109.46978 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46631 * 299.99971 * 1 2 3 33 33 H 1.08998 * 109.20072 * 72.49902 * 7 5 3 34 34 H 1.08997 * 109.19737 * 313.21272 * 7 5 3 35 35 H 1.07995 * 119.67010 * 1.23909 * 9 8 7 36 36 H 1.07995 * 120.11670 * 180.23583 * 10 9 8 37 37 H 0.96698 * 114.00326 * 89.99398 * 12 11 10 38 38 H 1.08000 * 119.77131 * 180.02562 * 13 11 10 39 39 H 1.08992 * 109.43953 * 132.10273 * 15 14 8 40 40 H 1.09002 * 109.43366 * 251.97488 * 15 14 8 41 41 H 1.09002 * 109.47215 * 217.35504 * 21 19 17 42 42 H 1.08992 * 109.47258 * 337.35667 * 21 19 17 43 43 H 1.08997 * 109.47107 * 97.35584 * 21 19 17 44 44 H 0.96993 * 120.00322 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.8815 2.3011 -0.1891 7 6 4.1316 0.3540 -1.0807 8 6 5.6161 0.1692 -0.9052 9 6 6.3443 -0.2706 -2.0048 10 6 7.7022 -0.4853 -1.9082 11 6 8.3511 -0.2603 -0.7024 12 8 9.6891 -0.4740 -0.5960 13 6 7.6276 0.1836 0.3912 14 6 6.2614 0.4033 0.2887 15 6 5.5379 0.9114 1.5106 16 7 4.0891 0.8230 1.2994 17 6 3.2692 0.3468 2.2572 18 8 2.0888 0.1939 2.0239 19 6 3.8190 0.0043 3.6178 20 1 4.3108 0.8797 4.0419 21 6 4.8308 -1.1358 3.4868 22 6 2.6920 -0.4257 4.5212 23 1 1.6789 -0.4482 4.1476 24 6 2.9541 -0.7893 5.8251 25 7 4.1877 -0.7614 6.2803 26 14 1.5571 -1.3216 6.9452 27 1 1.3669 -2.7903 6.8355 28 1 1.8867 -0.9688 8.3495 29 1 0.3073 -0.6290 6.5410 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 3.9381 0.7901 -2.0607 34 1 3.6397 -0.6166 -1.0176 35 1 5.8409 -0.4456 -2.9440 36 1 8.2599 -0.8233 -2.7690 37 1 10.2289 0.3010 -0.8035 38 1 8.1300 0.3600 1.3308 39 1 5.8160 0.3073 2.3742 40 1 5.8155 1.9500 1.6908 41 1 4.7384 -1.8039 4.3431 42 1 4.6354 -1.6914 2.5697 43 1 5.8396 -0.7243 3.4543 44 1 4.3722 -1.0176 7.1975 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363958908.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:07 Heat of formation + Delta-G solvation = -116.273031 kcal Electronic energy + Delta-G solvation = -30060.234680 eV Core-core repulsion = 25943.757697 eV Total energy + Delta-G solvation = -4116.476984 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.97469 -39.81339 -38.75900 -37.40659 -35.94550 -35.18789 -34.17469 -32.89824 -31.22927 -30.46686 -29.22973 -27.10653 -25.90695 -25.23954 -24.42411 -22.66457 -22.36541 -21.04425 -20.69951 -18.87535 -18.18161 -16.86732 -16.77091 -16.51519 -16.21674 -15.84009 -15.48843 -15.31440 -15.14443 -15.07437 -14.59188 -14.43167 -13.79330 -13.71190 -13.28156 -13.03767 -12.99783 -12.84705 -12.64268 -12.53593 -12.23053 -11.93379 -11.68772 -11.46120 -11.39563 -11.19404 -11.11799 -10.82638 -10.65192 -10.58675 -10.26036 -10.20376 -10.01865 -9.98126 -9.06672 -8.93488 -8.66323 -8.48135 -8.39728 -8.31439 -6.08863 -4.11731 1.10342 1.20838 2.42942 3.17701 3.31199 3.34458 3.37647 3.44670 3.45585 3.57764 4.06253 4.43014 4.52862 4.58998 4.78459 4.83641 4.99938 5.12707 5.24868 5.25782 5.35087 5.42658 5.50948 5.58831 5.64048 5.67989 5.75617 5.81308 5.88620 5.97545 6.01817 6.19164 6.29209 6.44472 6.49596 6.60215 6.69872 6.72435 6.82683 6.92616 7.31027 7.51182 7.65927 7.83834 7.94939 8.19664 8.25321 8.93364 8.98972 9.53409 10.99463 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.010622 B = 0.004757 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.476989 B = 5884.250276 C = 8048.919580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.329 6.329 3 C 0.493 3.507 4 O -0.526 6.526 5 C 0.151 3.849 6 H 0.111 0.889 7 C -0.091 4.091 8 C -0.075 4.075 9 C -0.101 4.101 10 C -0.147 4.147 11 C 0.102 3.898 12 O -0.499 6.499 13 C -0.136 4.136 14 C -0.067 4.067 15 C 0.132 3.868 16 N -0.619 5.619 17 C 0.522 3.478 18 O -0.507 6.507 19 C 0.036 3.964 20 H 0.054 0.946 21 C -0.125 4.125 22 C -0.501 4.501 23 H 0.074 0.926 24 C 0.059 3.941 25 N -0.893 5.893 26 Si 0.899 3.101 27 H -0.280 1.280 28 H -0.287 1.287 29 H -0.273 1.273 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.388 0.612 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.023 0.977 43 H 0.031 0.969 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.831 2.581 -16.486 18.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.244 6.244 3 C 0.337 3.663 4 O -0.415 6.415 5 C 0.046 3.954 6 H 0.129 0.871 7 C -0.129 4.129 8 C -0.075 4.075 9 C -0.119 4.119 10 C -0.165 4.165 11 C 0.058 3.942 12 O -0.308 6.308 13 C -0.155 4.155 14 C -0.068 4.068 15 C 0.010 3.990 16 N -0.358 5.358 17 C 0.315 3.685 18 O -0.381 6.381 19 C 0.015 3.985 20 H 0.072 0.928 21 C -0.182 4.182 22 C -0.540 4.540 23 H 0.092 0.908 24 C -0.142 4.142 25 N -0.532 5.532 26 Si 0.727 3.273 27 H -0.206 1.206 28 H -0.213 1.213 29 H -0.198 1.198 30 H 0.066 0.934 31 H 0.110 0.890 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.243 0.757 38 H 0.151 0.849 39 H 0.148 0.852 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.042 0.958 43 H 0.050 0.950 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.828 2.157 -16.242 17.751 hybrid contribution -0.418 0.243 0.463 0.669 sum 6.410 2.400 -15.779 17.200 Atomic orbital electron populations 1.23004 0.77204 1.02738 1.01420 1.86502 1.22557 1.32194 1.83169 1.22548 0.90526 0.81974 0.71271 1.90625 1.66791 1.36741 1.47373 1.20957 0.87901 0.99964 0.86579 0.87095 1.20843 0.92167 1.01598 0.98300 1.19388 0.94894 1.00276 0.92992 1.20994 0.93485 0.99176 0.98286 1.21284 0.95166 1.02727 0.97335 1.18307 0.83753 0.99391 0.92769 1.84849 1.14221 1.39976 1.91790 1.21296 0.93720 1.01025 0.99442 1.19792 0.93386 0.98765 0.94893 1.21042 0.78717 1.02302 0.96967 1.48466 1.07548 1.66738 1.13054 1.22277 0.86176 0.73279 0.86773 1.90560 1.16890 1.51691 1.78978 1.18893 0.96884 0.96687 0.86057 0.92843 1.21841 0.95452 0.99810 1.01127 1.21120 0.93740 1.44323 0.94788 0.90797 1.24932 0.95814 0.95568 0.97886 1.69953 1.18421 1.48463 1.16401 0.86461 0.82455 0.78912 0.79460 1.20633 1.21282 1.19779 0.93362 0.89021 0.91849 0.89476 0.88436 0.85615 0.85548 0.75668 0.84871 0.85151 0.90201 0.89445 0.95792 0.95012 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.80 10.26 101.05 1.04 1.84 16 2 O -0.33 -6.16 7.49 -47.57 -0.36 -6.51 16 3 C 0.49 9.23 4.82 36.01 0.17 9.41 16 4 O -0.53 -11.02 16.84 -20.05 -0.34 -11.36 16 5 C 0.15 2.36 3.32 -68.81 -0.23 2.13 16 6 H 0.11 1.54 8.13 -51.93 -0.42 1.12 16 7 C -0.09 -1.15 5.18 -28.04 -0.15 -1.29 16 8 C -0.08 -0.92 5.76 -104.56 -0.60 -1.53 16 9 C -0.10 -1.05 9.58 -39.45 -0.38 -1.43 16 10 C -0.15 -1.49 9.99 -39.54 -0.40 -1.89 16 11 C 0.10 1.13 6.70 -39.31 -0.26 0.86 16 12 O -0.50 -4.86 13.51 -19.45 -0.26 -5.13 16 13 C -0.14 -1.60 9.56 -39.32 -0.38 -1.97 16 14 C -0.07 -0.87 5.82 -104.56 -0.61 -1.48 16 15 C 0.13 1.91 5.85 -5.04 -0.03 1.88 16 16 N -0.62 -10.89 2.94 -168.16 -0.49 -11.39 16 17 C 0.52 11.58 6.75 -10.99 -0.07 11.51 16 18 O -0.51 -12.41 10.48 -20.82 -0.22 -12.63 16 19 C 0.04 0.85 1.90 -92.92 -0.18 0.68 16 20 H 0.05 1.32 8.13 -51.93 -0.42 0.90 16 21 C -0.12 -2.74 7.97 37.16 0.30 -2.45 16 22 C -0.50 -13.77 8.33 -34.44 -0.29 -14.06 16 23 H 0.07 2.15 6.76 -52.49 -0.35 1.80 16 24 C 0.06 1.60 5.03 -17.82 -0.09 1.51 16 25 N -0.89 -24.41 11.69 55.43 0.65 -23.76 16 26 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 29 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 30 H 0.05 0.66 8.13 -51.93 -0.42 0.24 16 31 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 1.13 8.13 -51.93 -0.42 0.71 16 33 H 0.09 0.85 8.10 -51.93 -0.42 0.43 16 34 H 0.10 1.35 7.53 -51.93 -0.39 0.96 16 35 H 0.13 1.02 8.05 -52.49 -0.42 0.60 16 36 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.39 1.80 9.06 45.56 0.41 2.21 16 38 H 0.13 1.41 8.05 -52.49 -0.42 0.99 16 39 H 0.13 2.05 3.53 -51.93 -0.18 1.87 16 40 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.09 2.19 6.10 -51.93 -0.32 1.87 16 42 H 0.02 0.49 7.73 -51.93 -0.40 0.09 16 43 H 0.03 0.61 6.08 -51.93 -0.32 0.29 16 44 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 356.80 15.07 5.38 5.38 Total: -1.00 -33.68 356.80 -7.72 -41.40 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -4.91 Total: 3.83 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -2.15 Total: 3.71 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: 0.15 Total: -35.15 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -1.17 Total: -35.62 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.68 -7.72 -41.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363958908.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.872 kcal (2) G-P(sol) polarization free energy of solvation -33.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds