Wall clock time and date at job start Tue Mar 31 2020 18:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34230 * 116.99891 * 2 1 4 4 O 1.20824 * 120.00078 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99572 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.75471 * 169.40727 * 5 3 2 7 7 C 1.52772 * 109.76876 * 48.67625 * 5 3 2 8 8 C 1.50621 * 110.86795 * 192.85637 * 7 5 3 9 9 C 1.39022 * 117.57447 * 199.91290 * 8 7 5 10 10 C 1.37811 * 120.66005 * 181.23120 * 9 8 7 11 11 C 1.38765 * 119.76477 * 359.96864 * 10 9 8 12 12 O 1.35906 * 120.19741 * 179.75916 * 11 10 9 13 13 C 1.38443 * 119.60116 * 359.72948 * 11 10 9 14 14 C 1.37714 * 122.81805 * 20.60071 * 8 7 5 15 15 C 1.50826 * 122.33356 * 357.85216 * 14 8 7 16 16 N 1.46679 * 109.68444 * 12.03392 * 15 14 8 17 17 C 1.34776 * 121.32068 * 135.47631 * 16 15 14 18 18 O 1.21285 * 119.99638 * 185.30718 * 17 16 15 19 19 C 1.50697 * 120.00109 * 5.30389 * 17 16 15 20 20 H 1.08999 * 109.47260 * 56.68435 * 19 17 16 21 21 C 1.53000 * 109.47114 * 296.67849 * 19 17 16 22 22 C 1.50703 * 109.46802 * 176.68254 * 19 17 16 23 23 H 1.08001 * 120.00449 * 359.97438 * 22 19 17 24 24 C 1.37880 * 119.99818 * 180.02562 * 22 19 17 25 25 N 1.31518 * 120.00222 * 359.97438 * 24 22 19 26 26 Si 1.86804 * 120.00007 * 179.97438 * 24 22 19 27 27 H 1.48497 * 109.47066 * 89.99607 * 26 24 22 28 28 H 1.48498 * 109.46946 * 209.99387 * 26 24 22 29 29 H 1.48496 * 109.46901 * 329.99454 * 26 24 22 30 30 H 1.08996 * 109.46846 * 59.99945 * 1 2 3 31 31 H 1.08994 * 109.46978 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46631 * 299.99971 * 1 2 3 33 33 H 1.08998 * 109.20072 * 72.49902 * 7 5 3 34 34 H 1.08997 * 109.19737 * 313.21272 * 7 5 3 35 35 H 1.07995 * 119.67010 * 1.23909 * 9 8 7 36 36 H 1.07995 * 120.11670 * 180.23583 * 10 9 8 37 37 H 0.96698 * 114.00326 * 89.99398 * 12 11 10 38 38 H 1.08000 * 119.77131 * 180.02562 * 13 11 10 39 39 H 1.08992 * 109.43953 * 132.10273 * 15 14 8 40 40 H 1.09002 * 109.43366 * 251.97488 * 15 14 8 41 41 H 1.09002 * 109.47215 * 217.35504 * 21 19 17 42 42 H 1.08992 * 109.47258 * 337.35667 * 21 19 17 43 43 H 1.08997 * 109.47107 * 97.35584 * 21 19 17 44 44 H 0.96993 * 120.00322 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.8815 2.3011 -0.1891 7 6 4.1316 0.3540 -1.0807 8 6 5.6161 0.1692 -0.9052 9 6 6.3443 -0.2706 -2.0048 10 6 7.7022 -0.4853 -1.9082 11 6 8.3511 -0.2603 -0.7024 12 8 9.6891 -0.4740 -0.5960 13 6 7.6276 0.1836 0.3912 14 6 6.2614 0.4033 0.2887 15 6 5.5379 0.9114 1.5106 16 7 4.0891 0.8230 1.2994 17 6 3.2692 0.3468 2.2572 18 8 2.0888 0.1939 2.0239 19 6 3.8190 0.0043 3.6178 20 1 4.3108 0.8797 4.0419 21 6 4.8308 -1.1358 3.4868 22 6 2.6920 -0.4257 4.5212 23 1 1.6789 -0.4482 4.1476 24 6 2.9541 -0.7893 5.8251 25 7 4.1877 -0.7614 6.2803 26 14 1.5571 -1.3216 6.9452 27 1 1.3669 -2.7903 6.8355 28 1 1.8867 -0.9688 8.3495 29 1 0.3073 -0.6290 6.5410 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 3.9381 0.7901 -2.0607 34 1 3.6397 -0.6166 -1.0176 35 1 5.8409 -0.4456 -2.9440 36 1 8.2599 -0.8233 -2.7690 37 1 10.2289 0.3010 -0.8035 38 1 8.1300 0.3600 1.3308 39 1 5.8160 0.3073 2.3742 40 1 5.8155 1.9500 1.6908 41 1 4.7384 -1.8039 4.3431 42 1 4.6354 -1.6914 2.5697 43 1 5.8396 -0.7243 3.4543 44 1 4.3722 -1.0176 7.1975 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363958908.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:07 Heat of formation + Delta-G solvation = -137.635978 kcal Electronic energy + Delta-G solvation = -30061.161047 eV Core-core repulsion = 25943.757697 eV Total energy + Delta-G solvation = -4117.403351 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.29896 -40.89951 -40.19954 -38.44484 -37.38985 -36.40300 -36.02190 -34.18805 -32.55380 -31.90020 -30.39241 -28.35525 -27.35069 -27.01745 -25.52956 -24.26711 -23.32255 -22.35109 -21.91540 -20.27263 -19.13266 -18.44748 -18.20695 -18.09242 -17.71175 -16.98628 -16.90843 -16.54035 -16.43673 -16.13402 -16.06818 -15.81910 -15.22790 -14.82590 -14.60404 -14.48492 -14.15843 -14.11614 -13.96002 -13.75632 -13.69796 -13.19928 -13.03966 -12.87002 -12.77836 -12.74230 -12.56585 -12.42145 -12.29904 -12.06536 -11.97851 -11.60359 -11.44448 -11.41251 -11.05531 -10.56759 -10.26315 -9.93126 -9.60265 -9.33544 -8.17188 -6.25832 0.26743 0.37879 0.99548 1.39670 1.40987 1.51763 1.74276 1.86035 2.09246 2.44343 2.63896 3.14540 3.30457 3.39114 3.57937 3.76009 3.92183 3.95949 4.09433 4.17067 4.28758 4.29998 4.33571 4.39971 4.54034 4.58400 4.65936 4.69373 4.73487 4.82314 4.90666 4.96205 5.04953 5.05352 5.20078 5.36852 5.47739 5.50421 5.52322 5.59477 5.73791 5.87826 5.90990 6.13237 6.40784 6.76129 6.81463 6.94191 7.26911 7.42464 8.89932 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.010622 B = 0.004757 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.476989 B = 5884.250276 C = 8048.919580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.340 6.340 3 C 0.488 3.512 4 O -0.556 6.556 5 C 0.149 3.851 6 H 0.132 0.868 7 C -0.081 4.081 8 C -0.089 4.089 9 C -0.095 4.095 10 C -0.145 4.145 11 C 0.103 3.897 12 O -0.509 6.509 13 C -0.146 4.146 14 C -0.080 4.080 15 C 0.131 3.869 16 N -0.612 5.612 17 C 0.519 3.481 18 O -0.541 6.541 19 C 0.035 3.965 20 H 0.041 0.959 21 C -0.107 4.107 22 C -0.525 4.525 23 H 0.048 0.952 24 C 0.023 3.977 25 N -0.907 5.907 26 Si 0.951 3.049 27 H -0.274 1.274 28 H -0.276 1.276 29 H -0.281 1.281 30 H 0.070 0.930 31 H 0.116 0.884 32 H 0.034 0.966 33 H 0.120 0.880 34 H 0.084 0.916 35 H 0.153 0.847 36 H 0.149 0.851 37 H 0.410 0.590 38 H 0.138 0.862 39 H 0.116 0.884 40 H 0.099 0.901 41 H 0.056 0.944 42 H 0.027 0.973 43 H 0.058 0.942 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.463 2.325 -18.482 20.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 O -0.254 6.254 3 C 0.334 3.666 4 O -0.448 6.448 5 C 0.045 3.955 6 H 0.150 0.850 7 C -0.118 4.118 8 C -0.089 4.089 9 C -0.112 4.112 10 C -0.164 4.164 11 C 0.058 3.942 12 O -0.322 6.322 13 C -0.165 4.165 14 C -0.080 4.080 15 C 0.010 3.990 16 N -0.349 5.349 17 C 0.310 3.690 18 O -0.418 6.418 19 C 0.014 3.986 20 H 0.059 0.941 21 C -0.164 4.164 22 C -0.564 4.564 23 H 0.066 0.934 24 C -0.177 4.177 25 N -0.546 5.546 26 Si 0.778 3.222 27 H -0.200 1.200 28 H -0.201 1.201 29 H -0.206 1.206 30 H 0.089 0.911 31 H 0.134 0.866 32 H 0.053 0.947 33 H 0.139 0.861 34 H 0.102 0.898 35 H 0.170 0.830 36 H 0.167 0.833 37 H 0.270 0.730 38 H 0.156 0.844 39 H 0.133 0.867 40 H 0.117 0.883 41 H 0.075 0.925 42 H 0.046 0.954 43 H 0.076 0.924 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.523 1.912 -18.262 20.243 hybrid contribution -0.851 0.346 1.029 1.379 sum 7.672 2.258 -17.233 18.998 Atomic orbital electron populations 1.23182 0.76138 1.04334 1.01083 1.86488 1.23847 1.32348 1.82761 1.23166 0.91795 0.81497 0.70179 1.90597 1.67816 1.37544 1.48795 1.21264 0.85942 1.01986 0.86301 0.85044 1.20790 0.92254 1.00261 0.98524 1.19421 0.94592 1.01381 0.93503 1.21238 0.93568 0.97843 0.98587 1.21572 0.95246 1.01802 0.97732 1.18419 0.84338 0.98601 0.92799 1.84792 1.13874 1.41641 1.91917 1.21361 0.93353 1.01556 1.00210 1.19633 0.93812 1.00220 0.94379 1.21133 0.76830 1.03430 0.97637 1.48275 1.08475 1.65170 1.13004 1.21844 0.86074 0.73934 0.87140 1.90546 1.18106 1.53372 1.79807 1.18757 0.96174 0.96652 0.87044 0.94093 1.21608 0.96498 0.98558 0.99759 1.21246 0.93702 1.45337 0.96078 0.93355 1.25516 0.97845 0.95500 0.98822 1.70012 1.19373 1.48477 1.16738 0.85656 0.79706 0.78647 0.78232 1.19967 1.20115 1.20615 0.91132 0.86555 0.94670 0.86140 0.89789 0.82955 0.83283 0.73042 0.84419 0.86674 0.88283 0.92505 0.95383 0.92385 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.49 10.26 113.37 1.16 2.65 16 2 O -0.34 -12.80 7.49 -43.46 -0.33 -13.12 16 3 C 0.49 18.30 4.82 71.24 0.34 18.65 16 4 O -0.56 -23.56 16.84 23.22 0.39 -23.17 16 5 C 0.15 4.50 3.32 44.04 0.15 4.64 16 6 H 0.13 3.42 8.13 -2.39 -0.02 3.40 16 7 C -0.08 -1.85 5.18 29.75 0.15 -1.69 16 8 C -0.09 -1.94 5.76 -19.83 -0.11 -2.05 16 9 C -0.09 -1.61 9.58 22.36 0.21 -1.39 16 10 C -0.15 -2.41 9.99 22.29 0.22 -2.19 16 11 C 0.10 1.97 6.70 22.44 0.15 2.12 16 12 O -0.51 -8.42 13.51 -92.50 -1.25 -9.67 16 13 C -0.15 -3.12 9.56 22.44 0.21 -2.91 16 14 C -0.08 -1.91 5.82 -19.83 -0.12 -2.02 16 15 C 0.13 3.67 5.85 85.64 0.50 4.17 16 16 N -0.61 -21.39 2.94 -804.34 -2.36 -23.75 16 17 C 0.52 23.55 6.75 87.66 0.59 24.14 16 18 O -0.54 -27.45 10.48 22.17 0.23 -27.22 16 19 C 0.03 1.71 1.90 -12.29 -0.02 1.69 16 20 H 0.04 2.09 8.13 -2.39 -0.02 2.07 16 21 C -0.11 -4.75 7.97 71.98 0.57 -4.18 16 22 C -0.53 -29.87 8.33 25.60 0.21 -29.65 16 23 H 0.05 2.95 6.76 -2.91 -0.02 2.93 16 24 C 0.02 1.26 5.03 84.65 0.43 1.68 16 25 N -0.91 -50.06 11.69 21.45 0.25 -49.81 16 26 Si 0.95 44.67 29.54 68.60 2.03 46.70 16 27 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 28 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 29 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 30 H 0.07 1.91 8.13 -2.39 -0.02 1.89 16 31 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 32 H 0.03 1.31 8.13 -2.39 -0.02 1.29 16 33 H 0.12 1.93 8.10 -2.39 -0.02 1.91 16 34 H 0.08 2.18 7.53 -2.39 -0.02 2.17 16 35 H 0.15 1.74 8.05 -2.91 -0.02 1.72 16 36 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 37 H 0.41 2.53 9.06 -74.06 -0.67 1.86 16 38 H 0.14 2.71 8.05 -2.91 -0.02 2.68 16 39 H 0.12 3.57 3.53 -2.39 -0.01 3.56 16 40 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.06 2.88 6.10 -2.39 -0.01 2.87 16 42 H 0.03 1.18 7.73 -2.39 -0.02 1.16 16 43 H 0.06 2.23 6.08 -2.39 -0.01 2.22 16 44 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -74.63 356.80 4.00 -70.63 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.38 Total: 15.76 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: 4.66 Total: 13.66 kcal Atomic # 7 Polarization: -71.45 SS G_CDS: -2.11 Total: -73.56 kcal Atomic # 8 Polarization: -72.23 SS G_CDS: -0.95 Total: -73.18 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -74.63 4.00 -70.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363958908.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.009 kcal (2) G-P(sol) polarization free energy of solvation -74.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds