Wall clock time and date at job start Tue Mar 31 2020 17:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34232 * 116.99798 * 2 1 4 4 O 1.20823 * 120.00340 * 359.97438 * 3 2 1 5 5 C 1.50708 * 119.99767 * 179.97438 * 3 2 1 6 6 H 1.08994 * 112.84870 * 48.80425 * 5 3 2 7 7 C 1.53784 * 113.61261 * 180.02562 * 5 3 2 8 8 C 1.53784 * 87.07895 * 140.06295 * 7 5 3 9 9 H 1.09004 * 113.61299 * 89.20116 * 8 7 5 10 10 S 1.81395 * 113.61085 * 220.01574 * 8 7 5 11 11 O 1.42105 * 110.54530 * 291.62674 * 10 8 7 12 12 O 1.42101 * 110.54333 * 68.37846 * 10 8 7 13 13 N 1.65599 * 104.44748 * 180.02562 * 10 8 7 14 14 C 1.46496 * 120.00146 * 65.00260 * 13 10 8 15 15 C 1.53002 * 109.47404 * 165.00278 * 14 13 10 16 16 C 1.53003 * 109.46758 * 299.99742 * 15 14 13 17 17 C 1.52994 * 109.47204 * 59.99470 * 15 14 13 18 18 C 1.53000 * 109.47305 * 180.02562 * 15 14 13 19 19 C 1.50694 * 109.47173 * 179.97438 * 18 15 14 20 20 H 1.08001 * 120.00129 * 0.02562 * 19 18 15 21 21 C 1.37880 * 120.00084 * 179.97438 * 19 18 15 22 22 N 1.31515 * 119.99963 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00085 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47044 * 60.00361 * 23 21 19 25 25 H 1.48498 * 109.47267 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47119 * 300.00722 * 23 21 19 27 27 C 1.53775 * 87.08061 * 334.56674 * 8 7 5 28 28 H 1.09007 * 109.46985 * 60.00247 * 1 2 3 29 29 H 1.09000 * 109.46998 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47121 * 300.00234 * 1 2 3 31 31 H 1.08999 * 113.61493 * 25.51514 * 7 5 3 32 32 H 1.08998 * 113.60880 * 254.61592 * 7 5 3 33 33 H 0.97001 * 120.00004 * 244.99733 * 13 10 8 34 34 H 1.09006 * 109.47217 * 284.99705 * 14 13 10 35 35 H 1.08999 * 109.47705 * 44.99940 * 14 13 10 36 36 H 1.08999 * 109.47075 * 60.00027 * 16 15 14 37 37 H 1.09003 * 109.47109 * 180.02562 * 16 15 14 38 38 H 1.09001 * 109.47022 * 300.00253 * 16 15 14 39 39 H 1.08998 * 109.47188 * 60.00432 * 17 15 14 40 40 H 1.09003 * 109.46898 * 180.02562 * 17 15 14 41 41 H 1.08999 * 109.47349 * 300.00414 * 17 15 14 42 42 H 1.08998 * 109.46739 * 299.99355 * 18 15 14 43 43 H 1.09001 * 109.47263 * 59.99264 * 18 15 14 44 44 H 0.96995 * 119.99927 * 180.02562 * 22 21 19 45 45 H 1.09003 * 113.61543 * 139.98276 * 27 8 7 46 46 H 1.09003 * 113.61554 * 270.88045 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5664 1.2749 0.0006 6 1 4.0239 0.6363 -0.7549 7 6 4.1078 2.7143 0.0011 8 6 5.1820 2.2261 0.9873 9 1 6.0819 1.8492 0.5013 10 16 5.5412 3.4092 2.3146 11 8 6.1867 4.5628 1.7933 12 8 4.4303 3.5255 3.1931 13 7 6.7073 2.6662 3.2260 14 6 8.0267 2.3969 2.6492 15 6 9.0142 2.0623 3.7690 16 6 9.1113 3.2459 4.7338 17 6 8.5266 0.8257 4.5264 18 6 10.3924 1.7817 3.1667 19 6 11.3651 1.4528 4.2696 20 1 11.0335 1.4443 5.2974 21 6 12.6783 1.1616 3.9666 22 7 13.0821 1.1715 2.7150 23 14 13.8843 0.7546 5.3339 24 1 13.4115 -0.4454 6.0699 25 1 15.2219 0.4821 4.7493 26 1 13.9782 1.9039 6.2694 27 6 4.1925 1.1226 1.3968 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 3.4177 3.4402 0.4313 32 1 4.5098 3.0298 -0.9616 33 1 6.5167 2.4094 4.1418 34 1 7.9576 1.5537 1.9619 35 1 8.3742 3.2780 2.1097 36 1 8.1296 3.4462 5.1629 37 1 9.8151 3.0077 5.5313 38 1 9.4586 4.1269 4.1942 39 1 8.4574 -0.0175 3.8391 40 1 9.2299 0.5876 5.3244 41 1 7.5449 1.0261 4.9555 42 1 10.3235 0.9387 2.4792 43 1 10.7395 2.6630 2.6273 44 1 14.0058 0.9663 2.5018 45 1 4.6630 0.1531 1.5609 46 1 3.5256 1.4133 2.2086 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364009097.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:39 Heat of formation + Delta-G solvation = -151.461626 kcal Electronic energy + Delta-G solvation = -27327.901785 eV Core-core repulsion = 23345.342861 eV Total energy + Delta-G solvation = -3982.558924 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.17181 -38.80271 -37.75415 -37.03587 -36.65569 -35.93014 -33.58004 -31.91804 -29.17718 -27.09064 -26.95400 -26.48050 -26.39823 -25.82547 -22.76403 -22.52231 -20.25328 -19.21756 -18.56331 -18.35622 -17.57661 -17.10691 -16.81557 -16.40894 -16.07171 -15.88010 -15.71204 -14.60156 -14.50686 -14.19182 -13.99349 -13.76984 -13.40215 -13.17020 -13.03354 -12.84441 -12.61292 -12.48041 -12.34902 -12.11747 -12.07411 -12.00162 -11.94509 -11.84723 -11.24111 -11.19923 -11.17467 -11.00033 -10.87516 -10.87018 -10.62772 -10.46925 -10.39241 -10.27177 -9.89573 -9.25759 -9.15549 -8.92829 -8.37463 -6.02258 -4.02955 0.23379 1.76278 2.30788 2.72453 3.31195 3.36492 3.38346 3.51292 3.62376 3.85155 3.91114 4.29699 4.42495 4.45737 4.56870 4.72248 4.80030 4.96447 5.07881 5.13680 5.16404 5.25270 5.29397 5.33581 5.35668 5.53204 5.67368 5.72930 5.82469 5.96937 6.09494 6.22650 6.32117 6.39485 6.65294 6.68338 7.04656 7.08132 7.13049 7.19166 7.33625 7.60022 7.73381 7.96506 8.39260 9.01468 9.60254 11.09178 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.021971 B = 0.002494 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.120054 B =11222.822585 C =11699.832716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.356 6.356 3 C 0.469 3.531 4 O -0.502 6.502 5 C -0.098 4.098 6 H 0.136 0.864 7 C -0.090 4.090 8 C -0.630 4.630 9 H 0.162 0.838 10 S 2.617 3.383 11 O -0.951 6.951 12 O -0.961 6.961 13 N -1.110 6.110 14 C 0.121 3.879 15 C -0.065 4.065 16 C -0.129 4.129 17 C -0.128 4.128 18 C 0.034 3.966 19 C -0.511 4.511 20 H 0.059 0.941 21 C 0.056 3.944 22 N -0.896 5.896 23 Si 0.889 3.111 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.278 1.278 27 C -0.090 4.090 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.416 0.584 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.033 0.967 37 H 0.065 0.935 38 H 0.048 0.952 39 H 0.047 0.953 40 H 0.067 0.933 41 H 0.031 0.969 42 H 0.018 0.982 43 H 0.019 0.981 44 H 0.260 0.740 45 H 0.103 0.897 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.760 -3.131 -6.042 22.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.273 6.273 3 C 0.311 3.689 4 O -0.389 6.389 5 C -0.118 4.118 6 H 0.154 0.846 7 C -0.129 4.129 8 C -0.738 4.738 9 H 0.180 0.820 10 S 2.708 3.292 11 O -0.941 6.941 12 O -0.951 6.951 13 N -0.872 5.872 14 C -0.004 4.004 15 C -0.066 4.066 16 C -0.186 4.186 17 C -0.185 4.185 18 C -0.004 4.004 19 C -0.549 4.549 20 H 0.077 0.923 21 C -0.145 4.145 22 N -0.535 5.535 23 Si 0.717 3.283 24 H -0.204 1.204 25 H -0.214 1.214 26 H -0.203 1.203 27 C -0.128 4.128 28 H 0.082 0.918 29 H 0.121 0.879 30 H 0.083 0.917 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.253 0.747 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.052 0.948 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.050 0.950 42 H 0.036 0.964 43 H 0.038 0.962 44 H 0.070 0.930 45 H 0.122 0.878 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -22.162 -1.954 -6.193 23.094 hybrid contribution 0.718 -1.014 0.610 1.384 sum -21.444 -2.968 -5.583 22.357 Atomic orbital electron populations 1.23314 0.76171 1.03861 1.02708 1.86524 1.23577 1.33286 1.83878 1.23611 0.91684 0.81452 0.72130 1.90686 1.66924 1.36405 1.44871 1.22489 0.87267 1.00465 1.01608 0.84647 1.22618 0.94558 0.95432 1.00278 1.32046 1.07253 1.15981 1.18507 0.82035 1.04753 0.73508 0.75485 0.75452 1.93611 1.74371 1.44766 1.81321 1.93590 1.53368 1.86147 1.61979 1.55502 1.25350 1.80479 1.25844 1.21611 0.81195 1.00505 0.97105 1.20797 0.96692 0.95125 0.94014 1.21759 0.99629 0.97509 0.99714 1.21764 0.98803 0.97242 1.00721 1.19131 0.88179 0.97014 0.96059 1.21153 0.93888 1.46537 0.93314 0.92292 1.25006 0.98453 0.95784 0.95247 1.69942 1.16948 1.49474 1.17162 0.86708 0.80417 0.78840 0.82305 1.20360 1.21437 1.20321 1.22591 0.95606 0.99024 0.95583 0.91824 0.87939 0.91696 0.87712 0.88048 0.74726 0.92214 0.90527 0.94845 0.91620 0.93280 0.93374 0.91450 0.95006 0.96384 0.96242 0.93005 0.87818 0.87538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.27 16 2 O -0.36 -3.14 10.57 -39.26 -0.41 -3.55 16 3 C 0.47 4.65 7.49 36.01 0.27 4.92 16 4 O -0.50 -6.37 15.65 -18.75 -0.29 -6.66 16 5 C -0.10 -0.76 4.26 -90.96 -0.39 -1.15 16 6 H 0.14 0.72 8.14 -51.93 -0.42 0.29 16 7 C -0.09 -0.78 6.99 -25.92 -0.18 -0.96 16 8 C -0.63 -5.50 4.41 -25.92 -0.11 -5.61 16 9 H 0.16 1.09 8.13 -51.93 -0.42 0.67 16 10 S 2.62 33.01 5.43 -107.50 -0.58 32.43 16 11 O -0.95 -15.46 17.49 -57.54 -1.01 -16.47 16 12 O -0.96 -14.27 17.26 -57.54 -0.99 -15.26 16 13 N -1.11 -14.14 5.22 -10.61 -0.06 -14.20 16 14 C 0.12 1.80 5.02 -4.04 -0.02 1.78 16 15 C -0.06 -1.16 0.55 -154.51 -0.08 -1.25 16 16 C -0.13 -2.31 8.05 37.16 0.30 -2.01 16 17 C -0.13 -2.09 8.05 37.15 0.30 -1.80 16 18 C 0.03 0.79 4.04 -27.89 -0.11 0.67 16 19 C -0.51 -13.19 7.65 -34.44 -0.26 -13.46 16 20 H 0.06 1.48 5.68 -52.49 -0.30 1.18 16 21 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 22 N -0.90 -25.73 13.29 55.43 0.74 -25.00 16 23 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 C -0.09 -0.71 7.19 -25.92 -0.19 -0.89 16 28 H 0.06 0.38 8.13 -51.92 -0.42 -0.04 16 29 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.42 8.13 -51.93 -0.42 -0.01 16 31 H 0.10 1.03 7.40 -51.93 -0.38 0.64 16 32 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.42 4.97 6.44 -34.47 -0.22 4.74 16 34 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 35 H 0.08 1.21 7.69 -51.93 -0.40 0.81 16 36 H 0.03 0.51 7.19 -51.93 -0.37 0.14 16 37 H 0.06 1.26 6.62 -51.93 -0.34 0.91 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 1.22 6.62 -51.93 -0.34 0.88 16 41 H 0.03 0.42 6.60 -51.93 -0.34 0.08 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 45 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.11 0.92 7.38 -51.93 -0.38 0.54 16 LS Contribution 383.05 15.07 5.77 5.77 Total: -1.00 -34.61 383.05 -8.67 -43.28 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -7.30 Total: 0.84 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: 0.49 Total: -17.05 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.68 Total: -39.19 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -2.71 Total: -41.95 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 33.01 SS G_CDS: -0.58 Total: 32.43 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.61 -8.67 -43.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364009097.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.185 kcal (2) G-P(sol) polarization free energy of solvation -34.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds