Wall clock time and date at job start Tue Mar 31 2020 17:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34232 * 116.99798 * 2 1 4 4 O 1.20823 * 120.00340 * 359.97438 * 3 2 1 5 5 C 1.50708 * 119.99767 * 179.97438 * 3 2 1 6 6 H 1.08994 * 112.84870 * 48.80425 * 5 3 2 7 7 C 1.53784 * 113.61261 * 180.02562 * 5 3 2 8 8 C 1.53784 * 87.07895 * 140.06295 * 7 5 3 9 9 H 1.09004 * 113.61299 * 89.20116 * 8 7 5 10 10 S 1.81395 * 113.61085 * 220.01574 * 8 7 5 11 11 O 1.42105 * 110.54530 * 291.62674 * 10 8 7 12 12 O 1.42101 * 110.54333 * 68.37846 * 10 8 7 13 13 N 1.65599 * 104.44748 * 180.02562 * 10 8 7 14 14 C 1.46496 * 120.00146 * 65.00260 * 13 10 8 15 15 C 1.53002 * 109.47404 * 165.00278 * 14 13 10 16 16 C 1.53003 * 109.46758 * 299.99742 * 15 14 13 17 17 C 1.52994 * 109.47204 * 59.99470 * 15 14 13 18 18 C 1.53000 * 109.47305 * 180.02562 * 15 14 13 19 19 C 1.50694 * 109.47173 * 179.97438 * 18 15 14 20 20 H 1.08001 * 120.00129 * 0.02562 * 19 18 15 21 21 C 1.37880 * 120.00084 * 179.97438 * 19 18 15 22 22 N 1.31515 * 119.99963 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00085 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47044 * 60.00361 * 23 21 19 25 25 H 1.48498 * 109.47267 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47119 * 300.00722 * 23 21 19 27 27 C 1.53775 * 87.08061 * 334.56674 * 8 7 5 28 28 H 1.09007 * 109.46985 * 60.00247 * 1 2 3 29 29 H 1.09000 * 109.46998 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47121 * 300.00234 * 1 2 3 31 31 H 1.08999 * 113.61493 * 25.51514 * 7 5 3 32 32 H 1.08998 * 113.60880 * 254.61592 * 7 5 3 33 33 H 0.97001 * 120.00004 * 244.99733 * 13 10 8 34 34 H 1.09006 * 109.47217 * 284.99705 * 14 13 10 35 35 H 1.08999 * 109.47705 * 44.99940 * 14 13 10 36 36 H 1.08999 * 109.47075 * 60.00027 * 16 15 14 37 37 H 1.09003 * 109.47109 * 180.02562 * 16 15 14 38 38 H 1.09001 * 109.47022 * 300.00253 * 16 15 14 39 39 H 1.08998 * 109.47188 * 60.00432 * 17 15 14 40 40 H 1.09003 * 109.46898 * 180.02562 * 17 15 14 41 41 H 1.08999 * 109.47349 * 300.00414 * 17 15 14 42 42 H 1.08998 * 109.46739 * 299.99355 * 18 15 14 43 43 H 1.09001 * 109.47263 * 59.99264 * 18 15 14 44 44 H 0.96995 * 119.99927 * 180.02562 * 22 21 19 45 45 H 1.09003 * 113.61543 * 139.98276 * 27 8 7 46 46 H 1.09003 * 113.61554 * 270.88045 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5664 1.2749 0.0006 6 1 4.0239 0.6363 -0.7549 7 6 4.1078 2.7143 0.0011 8 6 5.1820 2.2261 0.9873 9 1 6.0819 1.8492 0.5013 10 16 5.5412 3.4092 2.3146 11 8 6.1867 4.5628 1.7933 12 8 4.4303 3.5255 3.1931 13 7 6.7073 2.6662 3.2260 14 6 8.0267 2.3969 2.6492 15 6 9.0142 2.0623 3.7690 16 6 9.1113 3.2459 4.7338 17 6 8.5266 0.8257 4.5264 18 6 10.3924 1.7817 3.1667 19 6 11.3651 1.4528 4.2696 20 1 11.0335 1.4443 5.2974 21 6 12.6783 1.1616 3.9666 22 7 13.0821 1.1715 2.7150 23 14 13.8843 0.7546 5.3339 24 1 13.4115 -0.4454 6.0699 25 1 15.2219 0.4821 4.7493 26 1 13.9782 1.9039 6.2694 27 6 4.1925 1.1226 1.3968 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 3.4177 3.4402 0.4313 32 1 4.5098 3.0298 -0.9616 33 1 6.5167 2.4094 4.1418 34 1 7.9576 1.5537 1.9619 35 1 8.3742 3.2780 2.1097 36 1 8.1296 3.4462 5.1629 37 1 9.8151 3.0077 5.5313 38 1 9.4586 4.1269 4.1942 39 1 8.4574 -0.0175 3.8391 40 1 9.2299 0.5876 5.3244 41 1 7.5449 1.0261 4.9555 42 1 10.3235 0.9387 2.4792 43 1 10.7395 2.6630 2.6273 44 1 14.0058 0.9663 2.5018 45 1 4.6630 0.1531 1.5609 46 1 3.5256 1.4133 2.2086 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364009097.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:38 Heat of formation + Delta-G solvation = -175.524880 kcal Electronic energy + Delta-G solvation = -27328.945246 eV Core-core repulsion = 23345.342861 eV Total energy + Delta-G solvation = -3983.602385 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.87704 -39.46866 -39.14294 -38.14142 -37.41014 -37.04201 -35.17625 -33.59861 -29.79946 -28.92008 -27.87758 -27.58606 -27.23950 -26.92646 -24.58514 -23.26628 -20.97964 -20.10459 -19.86730 -19.27134 -18.50091 -18.29103 -18.03565 -17.49280 -17.04638 -16.75201 -16.50685 -16.46402 -15.67795 -15.46422 -14.91639 -14.69244 -14.43894 -14.36825 -13.98536 -13.86482 -13.82056 -13.67684 -13.36026 -13.21949 -13.14242 -13.09454 -12.95701 -12.85263 -12.68973 -12.62514 -12.55031 -12.23722 -12.13475 -11.93573 -11.84044 -11.77611 -11.59021 -11.47705 -11.24237 -10.89368 -10.79234 -10.44641 -10.21776 -8.09670 -6.15099 -0.73897 1.04013 1.44659 1.45777 1.52645 1.70872 1.73383 2.47464 2.74986 2.80375 3.07105 3.25124 3.28835 3.48717 3.71117 3.96457 3.99159 4.21076 4.29450 4.31443 4.32067 4.39668 4.43477 4.54013 4.57795 4.69485 4.72472 4.81727 4.84459 4.85499 4.98279 5.05706 5.07193 5.21082 5.28021 5.31989 5.54729 5.56733 5.62976 5.65329 5.90570 5.97498 6.16510 6.39957 6.63833 6.99648 7.51622 9.01979 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.021971 B = 0.002494 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.120054 B =11222.822585 C =11699.832716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.358 6.358 3 C 0.467 3.533 4 O -0.539 6.539 5 C -0.091 4.091 6 H 0.170 0.830 7 C -0.104 4.104 8 C -0.603 4.603 9 H 0.193 0.807 10 S 2.616 3.384 11 O -0.996 6.996 12 O -0.988 6.988 13 N -1.106 6.106 14 C 0.127 3.873 15 C -0.062 4.062 16 C -0.128 4.128 17 C -0.124 4.124 18 C 0.038 3.962 19 C -0.513 4.513 20 H 0.065 0.935 21 C -0.001 4.001 22 N -0.934 5.934 23 Si 0.950 3.050 24 H -0.267 1.267 25 H -0.291 1.291 26 H -0.274 1.274 27 C -0.091 4.091 28 H 0.063 0.937 29 H 0.132 0.868 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.122 0.878 33 H 0.421 0.579 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.033 0.967 39 H 0.055 0.945 40 H 0.045 0.955 41 H 0.065 0.935 42 H 0.003 0.997 43 H -0.012 1.012 44 H 0.259 0.741 45 H 0.134 0.866 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.837 -5.164 -6.066 24.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.274 6.274 3 C 0.311 3.689 4 O -0.428 6.428 5 C -0.110 4.110 6 H 0.188 0.812 7 C -0.143 4.143 8 C -0.715 4.715 9 H 0.210 0.790 10 S 2.713 3.287 11 O -0.986 6.986 12 O -0.978 6.978 13 N -0.867 5.867 14 C 0.001 3.999 15 C -0.064 4.064 16 C -0.186 4.186 17 C -0.181 4.181 18 C 0.000 4.000 19 C -0.552 4.552 20 H 0.083 0.917 21 C -0.198 4.198 22 N -0.575 5.575 23 Si 0.776 3.224 24 H -0.192 1.192 25 H -0.216 1.216 26 H -0.199 1.199 27 C -0.129 4.129 28 H 0.082 0.918 29 H 0.150 0.850 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.141 0.859 33 H 0.258 0.742 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.021 0.979 43 H 0.006 0.994 44 H 0.068 0.932 45 H 0.152 0.848 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -23.239 -3.966 -6.150 24.364 hybrid contribution 0.941 -0.390 0.573 1.169 sum -22.298 -4.357 -5.577 23.394 Atomic orbital electron populations 1.23572 0.74984 1.05787 1.02470 1.86518 1.24836 1.32630 1.83397 1.24074 0.92582 0.81199 0.71044 1.90676 1.67897 1.37591 1.46675 1.22613 0.85891 1.00077 1.02433 0.81218 1.22777 0.94323 0.96111 1.01082 1.31843 1.08809 1.14608 1.16284 0.78980 1.04542 0.72612 0.75659 0.75907 1.93557 1.75099 1.48030 1.81915 1.93552 1.53804 1.86852 1.63641 1.55282 1.24577 1.80416 1.26464 1.21419 0.81209 1.01052 0.96183 1.20646 0.94712 0.96037 0.94964 1.21741 1.00628 0.97016 0.99176 1.21707 0.99948 0.96416 1.00054 1.19017 0.91052 0.94854 0.95090 1.21587 0.94384 1.44911 0.94280 0.91697 1.25825 1.00528 0.96210 0.97268 1.70072 1.17194 1.51202 1.19078 0.85724 0.78070 0.78921 0.79642 1.19237 1.21639 1.19901 1.22726 0.95030 0.99845 0.95348 0.91845 0.84960 0.92253 0.89549 0.85934 0.74181 0.89343 0.91940 0.92196 0.93209 0.94743 0.92622 0.93546 0.91591 0.97888 0.99358 0.93231 0.84800 0.88685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.56 113.37 1.20 1.47 16 2 O -0.36 -5.52 10.57 -51.44 -0.54 -6.07 16 3 C 0.47 8.44 7.49 71.24 0.53 8.97 16 4 O -0.54 -13.43 15.65 21.97 0.34 -13.09 16 5 C -0.09 -1.11 4.26 -11.01 -0.05 -1.15 16 6 H 0.17 0.94 8.14 -2.39 -0.02 0.92 16 7 C -0.10 -1.57 6.99 31.12 0.22 -1.35 16 8 C -0.60 -8.70 4.41 31.12 0.14 -8.56 16 9 H 0.19 1.69 8.13 -2.39 -0.02 1.67 16 10 S 2.62 63.21 5.43 -56.49 -0.31 62.90 16 11 O -1.00 -32.47 17.49 -127.65 -2.23 -34.70 16 12 O -0.99 -28.93 17.26 -127.65 -2.20 -31.13 16 13 N -1.11 -26.01 5.22 -187.49 -0.98 -26.99 16 14 C 0.13 3.57 5.02 86.38 0.43 4.00 16 15 C -0.06 -2.17 0.55 -52.18 -0.03 -2.20 16 16 C -0.13 -4.55 8.05 71.98 0.58 -3.97 16 17 C -0.12 -3.77 8.05 71.98 0.58 -3.19 16 18 C 0.04 1.77 4.04 29.85 0.12 1.89 16 19 C -0.51 -26.66 7.65 25.60 0.20 -26.47 16 20 H 0.06 3.23 5.68 -2.91 -0.02 3.22 16 21 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 22 N -0.93 -54.59 13.29 21.45 0.28 -54.30 16 23 Si 0.95 42.93 29.54 68.60 2.03 44.95 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 26 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 27 C -0.09 -1.12 7.19 31.12 0.22 -0.90 16 28 H 0.06 0.70 8.13 -2.38 -0.02 0.68 16 29 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.71 8.13 -2.39 -0.02 0.70 16 31 H 0.09 1.66 7.40 -2.39 -0.02 1.65 16 32 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.42 9.01 6.44 -96.74 -0.62 8.39 16 34 H 0.09 1.98 8.13 -2.38 -0.02 1.96 16 35 H 0.06 1.94 7.69 -2.39 -0.02 1.92 16 36 H 0.06 1.77 7.19 -2.39 -0.02 1.76 16 37 H 0.05 1.89 6.62 -2.39 -0.02 1.88 16 38 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 40 H 0.05 1.60 6.62 -2.39 -0.02 1.59 16 41 H 0.07 1.55 6.60 -2.39 -0.02 1.53 16 42 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 43 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 44 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 45 H 0.13 0.90 8.14 -2.39 -0.02 0.89 16 46 H 0.09 1.45 7.38 -2.39 -0.02 1.43 16 Total: -1.00 -77.38 383.05 1.36 -76.02 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.36 Total: 13.46 kcal Atomic # 6 Polarization: -35.67 SS G_CDS: 4.60 Total: -31.06 kcal Atomic # 7 Polarization: -80.60 SS G_CDS: -0.69 Total: -81.29 kcal Atomic # 8 Polarization: -80.35 SS G_CDS: -4.64 Total: -84.99 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: 63.21 SS G_CDS: -0.31 Total: 62.90 kcal Total: -77.38 1.36 -76.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364009097.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.501 kcal (2) G-P(sol) polarization free energy of solvation -77.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds