Wall clock time and date at job start Tue Mar 31 2020 18:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46678 * 2 1 4 4 C 1.50699 * 109.47101 * 119.99657 * 2 1 3 5 5 H 1.07999 * 120.00174 * 120.00145 * 4 2 1 6 6 C 1.37884 * 120.00149 * 300.00369 * 4 2 1 7 7 N 1.31512 * 119.99683 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00340 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.46889 * 59.99697 * 8 6 4 10 10 H 1.48493 * 109.47003 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46770 * 299.99991 * 8 6 4 12 12 N 1.46900 * 109.47447 * 239.99707 * 2 1 3 13 13 C 1.46903 * 110.99788 * 306.04772 * 12 2 1 14 14 C 1.38582 * 110.99909 * 69.99907 * 12 2 1 15 15 N 1.31216 * 126.47431 * 293.15773 * 14 12 2 16 16 N 1.28525 * 109.85985 * 180.25900 * 15 14 12 17 17 C 1.30294 * 110.05490 * 359.73749 * 16 15 14 18 18 C 1.50698 * 126.34903 * 179.97438 * 17 16 15 19 19 C 1.52995 * 117.49816 * 8.66665 * 18 17 16 20 20 C 1.52993 * 60.00218 * 252.51365 * 19 18 17 21 21 N 1.36446 * 126.47179 * 112.98190 * 14 12 2 22 22 C 1.46500 * 127.13719 * 0.02562 * 21 14 12 23 23 C 1.50694 * 109.47218 * 272.98318 * 22 21 14 24 24 N 1.29031 * 124.91734 * 89.99848 * 23 22 21 25 25 C 1.31777 * 117.12774 * 180.02562 * 24 23 22 26 26 C 1.33639 * 114.50101 * 0.23197 * 25 24 23 27 27 S 1.70979 * 124.91807 * 269.99929 * 23 22 21 28 28 H 1.09003 * 109.47139 * 60.00601 * 1 2 3 29 29 H 1.09001 * 109.47194 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47336 * 300.00318 * 1 2 3 31 31 H 0.97001 * 120.00102 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.46552 * 191.42676 * 13 12 2 33 33 H 1.08996 * 109.46915 * 311.42381 * 13 12 2 34 34 H 1.09001 * 109.47231 * 71.42769 * 13 12 2 35 35 H 1.09002 * 115.54874 * 154.38263 * 18 17 16 36 36 H 1.08999 * 117.50147 * 0.02562 * 19 18 17 37 37 H 1.09002 * 117.49531 * 145.01967 * 19 18 17 38 38 H 1.09009 * 117.49534 * 252.51395 * 20 19 18 39 39 H 1.08996 * 117.52155 * 107.48513 * 20 19 18 40 40 H 1.09004 * 109.47244 * 152.98532 * 22 21 14 41 41 H 1.09002 * 109.47230 * 32.98601 * 22 21 14 42 42 H 1.08000 * 122.75410 * 179.97438 * 25 24 23 43 43 H 1.07996 * 126.04298 * 179.77424 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9426 0.8297 2.6034 8 14 2.3212 -1.1201 4.0081 9 1 3.8061 -1.1207 4.0083 10 1 1.8257 -0.4203 5.2205 11 1 1.8256 -2.5200 4.0079 12 7 2.0197 -0.6925 -1.1994 13 6 1.4344 -2.0355 -1.3077 14 6 1.7681 0.0524 -2.3405 15 7 0.5899 0.3275 -2.8484 16 7 0.7275 1.0352 -3.9124 17 6 1.9909 1.2565 -4.1415 18 6 2.5658 2.0440 -5.2906 19 6 1.5871 2.8168 -6.1770 20 6 2.2627 1.5505 -6.7068 21 7 2.6986 0.6411 -3.1464 22 6 4.1542 0.6141 -2.9830 23 6 4.5794 1.7435 -2.0805 24 7 4.6816 1.6647 -0.7967 25 6 5.0675 2.7501 -0.1568 26 6 5.2993 3.8047 -0.9442 27 16 4.9964 3.3150 -2.6095 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.7085 1.1614 3.4843 32 1 1.9586 -2.5991 -2.0795 33 1 1.5302 -2.5517 -0.3525 34 1 0.3801 -1.9522 -1.5715 35 1 3.5439 2.4905 -5.1118 36 1 0.5275 2.7561 -5.9288 37 1 1.9212 3.7723 -6.5814 38 1 3.0413 1.6729 -7.4598 39 1 1.6479 0.6561 -6.8073 40 1 4.6313 0.7275 -3.9564 41 1 4.4526 -0.3365 -2.5407 42 1 5.1827 2.7859 0.9164 43 1 5.6182 4.7835 -0.6179 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001390897642.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:17 Heat of formation + Delta-G solvation = 162.369602 kcal Electronic energy + Delta-G solvation = -27356.949251 eV Core-core repulsion = 23759.893492 eV Total energy + Delta-G solvation = -3597.055759 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.132 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.00960 -40.63033 -39.09483 -37.88440 -36.35690 -34.78354 -31.91342 -31.24634 -30.12222 -28.85401 -27.29622 -26.96937 -25.32674 -24.86985 -23.33611 -23.08220 -21.61050 -21.04989 -20.71326 -19.18544 -18.45335 -18.03835 -17.51791 -17.09030 -16.69330 -16.53248 -16.26081 -15.52870 -15.39273 -15.14269 -15.03485 -14.72947 -14.48631 -14.29911 -13.63110 -13.41616 -13.12600 -13.07857 -12.92046 -12.69743 -12.62298 -12.54472 -12.44044 -12.28204 -12.12543 -12.10200 -11.87915 -11.58781 -11.37099 -11.35968 -10.93024 -10.51082 -10.49819 -10.41120 -9.94480 -9.81599 -9.41103 -8.10197 -6.21434 -0.43043 0.32111 0.65571 0.70922 1.26074 1.43186 1.45385 1.52628 1.76420 1.95651 2.43297 2.91858 3.06039 3.07115 3.20116 3.28951 3.56349 3.87233 3.94070 4.05972 4.12769 4.19244 4.28291 4.32188 4.43486 4.49030 4.66522 4.68084 4.78148 4.85246 4.94562 4.97153 5.01519 5.08501 5.08959 5.13374 5.19790 5.34952 5.42043 5.61249 5.65223 5.83100 6.10127 6.23830 6.66511 6.83267 6.85942 7.45709 7.74338 8.96675 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012077 B = 0.005058 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.982255 B = 5533.954162 C = 7093.509062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.256 3.744 3 H -0.009 1.009 4 C -0.502 4.502 5 H 0.063 0.937 6 C 0.015 3.985 7 N -0.923 5.923 8 Si 0.963 3.037 9 H -0.272 1.272 10 H -0.287 1.287 11 H -0.268 1.268 12 N -0.462 5.462 13 C 0.049 3.951 14 C 0.366 3.634 15 N -0.349 5.349 16 N -0.327 5.327 17 C 0.213 3.787 18 C -0.102 4.102 19 C -0.147 4.147 20 C -0.136 4.136 21 N -0.464 5.464 22 C 0.193 3.807 23 C -0.011 4.011 24 N -0.465 5.465 25 C 0.011 3.989 26 C -0.238 4.238 27 S 0.184 5.816 28 H 0.028 0.972 29 H 0.034 0.966 30 H 0.059 0.941 31 H 0.260 0.740 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.026 0.974 35 H 0.144 0.856 36 H 0.084 0.916 37 H 0.135 0.865 38 H 0.141 0.859 39 H 0.083 0.917 40 H 0.158 0.842 41 H 0.119 0.881 42 H 0.173 0.827 43 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.503 5.774 -17.504 22.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.150 3.850 3 H 0.009 0.991 4 C -0.541 4.541 5 H 0.082 0.918 6 C -0.184 4.184 7 N -0.563 5.563 8 Si 0.789 3.211 9 H -0.197 1.197 10 H -0.213 1.213 11 H -0.193 1.193 12 N -0.187 5.187 13 C -0.099 4.099 14 C 0.008 3.992 15 N -0.191 5.191 16 N -0.166 5.166 17 C -0.054 4.054 18 C -0.123 4.123 19 C -0.184 4.184 20 C -0.174 4.174 21 N -0.157 5.157 22 C 0.067 3.933 23 C -0.289 4.289 24 N -0.180 5.180 25 C -0.140 4.140 26 C -0.377 4.377 27 S 0.436 5.564 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.045 0.955 35 H 0.161 0.839 36 H 0.102 0.898 37 H 0.153 0.847 38 H 0.159 0.841 39 H 0.102 0.898 40 H 0.175 0.825 41 H 0.138 0.862 42 H 0.190 0.810 43 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 11.366 5.805 -18.167 22.202 hybrid contribution 0.383 -0.262 2.882 2.919 sum 11.749 5.543 -15.285 20.060 Atomic orbital electron populations 1.22298 1.00008 0.99523 1.00063 1.18789 0.89698 0.91804 0.84722 0.99074 1.21120 1.30601 1.12463 0.89902 0.91849 1.25665 0.95220 0.95699 1.01790 1.70059 1.37873 1.24399 1.23963 0.85533 0.78655 0.78733 0.78215 1.19717 1.21313 1.19306 1.59235 1.58885 1.02735 0.97847 1.22252 0.96993 0.87605 1.03001 1.22828 0.84390 0.98026 0.93917 1.74637 1.21204 1.16463 1.06822 1.73810 1.15872 1.15596 1.11348 1.24489 0.88257 0.99303 0.93357 1.20351 1.01534 1.03953 0.86463 1.23096 0.97862 0.97608 0.99866 1.23171 1.03535 0.98154 0.92511 1.46369 1.08343 1.40282 1.20751 1.20456 0.75547 0.97102 1.00187 1.27234 1.07090 1.00640 0.93964 1.66221 1.12713 1.31620 1.07451 1.22036 1.01759 0.87654 1.02513 1.27627 1.09359 1.05561 0.95196 1.83234 1.59833 1.05274 1.08033 0.95360 0.94705 0.92262 0.93115 0.90865 0.89906 0.95541 0.83874 0.89770 0.84723 0.84069 0.89802 0.82463 0.86245 0.81038 0.77180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.80 8.18 71.98 0.59 -8.21 16 2 C 0.26 13.87 2.28 44.17 0.10 13.97 16 3 H -0.01 -0.55 8.05 -2.39 -0.02 -0.56 16 4 C -0.50 -28.07 7.80 25.60 0.20 -27.88 16 5 H 0.06 3.47 7.20 -2.91 -0.02 3.45 16 6 C 0.01 0.82 5.30 84.66 0.45 1.27 16 7 N -0.92 -55.00 11.32 21.45 0.24 -54.76 16 8 Si 0.96 44.39 29.54 68.60 2.03 46.42 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 12 N -0.46 -21.25 4.73 -711.00 -3.37 -24.62 16 13 C 0.05 2.02 8.50 127.69 1.08 3.11 16 14 C 0.37 15.92 6.26 260.12 1.63 17.55 16 15 N -0.35 -16.26 9.81 -58.01 -0.57 -16.83 16 16 N -0.33 -13.38 11.79 -49.54 -0.58 -13.96 16 17 C 0.21 6.86 7.59 137.64 1.04 7.90 16 18 C -0.10 -2.03 5.82 -11.54 -0.07 -2.10 16 19 C -0.15 -2.50 10.15 30.59 0.31 -2.19 16 20 C -0.14 -1.98 10.23 30.59 0.31 -1.67 16 21 N -0.46 -15.93 2.79 -518.92 -1.45 -17.38 16 22 C 0.19 5.12 6.63 85.63 0.57 5.69 16 23 C -0.01 -0.33 6.97 88.52 0.62 0.28 16 24 N -0.47 -17.24 10.54 -191.45 -2.02 -19.26 16 25 C 0.01 0.37 11.35 83.66 0.95 1.31 16 26 C -0.24 -5.52 11.37 66.78 0.76 -4.76 16 27 S 0.18 3.81 23.18 -56.49 -1.31 2.50 16 28 H 0.03 1.55 6.01 -2.39 -0.01 1.53 16 29 H 0.03 1.82 6.59 -2.39 -0.02 1.81 16 30 H 0.06 3.56 6.07 -2.39 -0.01 3.55 16 31 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 32 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.08 3.50 6.63 -2.39 -0.02 3.48 16 34 H 0.03 1.13 6.66 -2.39 -0.02 1.12 16 35 H 0.14 2.03 8.05 -2.39 -0.02 2.01 16 36 H 0.08 1.93 7.92 -2.39 -0.02 1.91 16 37 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.14 1.03 8.14 -2.38 -0.02 1.01 16 39 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.16 2.47 7.77 -2.38 -0.02 2.45 16 41 H 0.12 3.40 8.14 -2.39 -0.02 3.38 16 42 H 0.17 5.34 8.06 -2.91 -0.02 5.32 16 43 H 0.21 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -78.09 369.52 2.55 -75.54 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 1.03 Total: 18.07 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: 8.55 Total: 4.28 kcal Atomic # 7 Polarization: -139.06 SS G_CDS: -7.74 Total: -146.81 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 16 Polarization: 3.81 SS G_CDS: -1.31 Total: 2.50 kcal Total: -78.09 2.55 -75.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001390897642.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 237.911 kcal (2) G-P(sol) polarization free energy of solvation -78.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds