Wall clock time and date at job start Tue Mar 31 2020 17:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.48167 * 2 1 4 4 C 1.53106 * 109.41726 * 240.01307 * 2 1 3 5 5 C 1.53181 * 109.15666 * 297.48879 * 4 2 1 6 6 H 1.08999 * 109.54143 * 63.06473 * 5 4 2 7 7 C 1.52993 * 109.54134 * 183.24129 * 5 4 2 8 8 S 1.81407 * 109.46838 * 184.82257 * 7 5 4 9 9 O 1.42098 * 110.54434 * 68.37622 * 8 7 5 10 10 O 1.42098 * 110.54402 * 291.62374 * 8 7 5 11 11 N 1.65601 * 104.44639 * 179.97438 * 8 7 5 12 12 C 1.47422 * 125.65165 * 269.95330 * 11 8 7 13 13 C 1.54910 * 104.83785 * 204.16940 * 12 11 8 14 14 C 1.55160 * 101.57874 * 322.99379 * 13 12 11 15 15 O 1.42901 * 110.71824 * 277.13568 * 14 13 12 16 16 C 1.50699 * 110.87312 * 153.93463 * 14 13 12 17 17 H 1.07997 * 119.99948 * 5.03556 * 16 14 13 18 18 C 1.37871 * 120.00061 * 185.03570 * 16 14 13 19 19 N 1.31516 * 120.00214 * 184.92239 * 18 16 14 20 20 Si 1.86803 * 120.00217 * 4.91841 * 18 16 14 21 21 H 1.48497 * 109.47024 * 84.75775 * 20 18 16 22 22 H 1.48503 * 109.47388 * 204.75407 * 20 18 16 23 23 H 1.48502 * 109.47015 * 324.75659 * 20 18 16 24 24 C 1.47025 * 125.64533 * 90.00560 * 11 8 7 25 25 C 1.53176 * 109.10790 * 303.15408 * 5 4 2 26 26 C 1.53088 * 109.16430 * 56.93765 * 25 5 4 27 27 O 1.42907 * 109.47970 * 120.02029 * 2 1 3 28 28 H 1.08996 * 109.47344 * 299.98482 * 1 2 3 29 29 H 1.09011 * 109.46450 * 59.97798 * 1 2 3 30 30 H 1.08998 * 109.47192 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.45500 * 177.62927 * 4 2 1 32 32 H 1.09003 * 109.59929 * 57.43504 * 4 2 1 33 33 H 1.09000 * 109.47134 * 64.82506 * 7 5 4 34 34 H 1.09005 * 109.47548 * 304.82208 * 7 5 4 35 35 H 1.08996 * 110.36660 * 323.01086 * 12 11 8 36 36 H 1.08998 * 110.36068 * 85.21885 * 12 11 8 37 37 H 1.08989 * 111.00549 * 204.92242 * 13 12 11 38 38 H 1.08998 * 111.00212 * 81.06504 * 13 12 11 39 39 H 0.96691 * 114.00062 * 293.52218 * 15 14 13 40 40 H 0.96999 * 120.00445 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.88504 * 59.48161 * 24 11 8 42 42 H 1.08997 * 109.88434 * 298.31320 * 24 11 8 43 43 H 1.09002 * 109.52278 * 176.84332 * 25 5 4 44 44 H 1.09005 * 109.52330 * 296.96506 * 25 5 4 45 45 H 1.08995 * 109.48486 * 62.37191 * 26 25 5 46 46 H 1.09004 * 109.47900 * 182.39910 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0390 -0.7217 -1.2507 5 6 1.5762 -2.1814 -1.2121 6 1 0.4873 -2.2196 -1.2416 7 6 2.1475 -2.9314 -2.4170 8 16 1.4846 -4.6198 -2.4480 9 8 0.0942 -4.6043 -2.7409 10 8 1.9955 -5.3762 -1.3590 11 7 2.1754 -5.3103 -3.7853 12 6 1.6124 -5.2955 -5.1477 13 6 2.2396 -6.5260 -5.8495 14 6 3.6744 -6.5235 -5.2590 15 8 4.5130 -5.6123 -5.9721 16 6 4.2636 -7.9104 -5.2738 17 1 3.7223 -8.7221 -5.7369 18 6 5.4936 -8.1431 -4.6961 19 7 6.0518 -9.3300 -4.7932 20 14 6.3676 -6.7726 -3.7756 21 1 5.8731 -6.7225 -2.3763 22 1 7.8300 -7.0308 -3.7748 23 1 6.0944 -5.4749 -4.4439 24 6 3.4512 -6.0405 -3.8103 25 6 2.0769 -2.8321 0.0811 26 6 1.5646 -2.0284 1.2791 27 8 2.0066 -0.6740 1.1665 28 1 -0.3634 0.5136 0.8901 29 1 -0.3632 0.5142 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1281 -0.6854 -1.2728 32 1 1.6393 -0.2363 -2.1411 33 1 3.2341 -2.9691 -2.3397 34 1 1.8662 -2.4137 -3.3341 35 1 0.5274 -5.3920 -5.1109 36 1 1.8936 -4.3779 -5.6644 37 1 2.2619 -6.3899 -6.9306 38 1 1.7091 -7.4401 -5.5831 39 1 4.6843 -5.8701 -6.8881 40 1 6.9174 -9.4936 -4.3872 41 1 3.4015 -6.8967 -3.1376 42 1 4.2634 -5.3781 -3.5111 43 1 1.7042 -3.8546 0.1423 44 1 3.1669 -2.8408 0.0862 45 1 0.4751 -2.0551 1.2957 46 1 1.9530 -2.4622 2.2006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413387514.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:21 Heat of formation + Delta-G solvation = -162.345792 kcal Electronic energy + Delta-G solvation = -28736.816404 eV Core-core repulsion = 24753.785507 eV Total energy + Delta-G solvation = -3983.030897 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.15744 -38.45749 -36.97939 -35.85466 -35.25715 -34.58766 -32.56463 -32.45011 -29.81158 -29.45538 -28.62471 -27.41674 -24.69514 -23.81696 -22.77308 -22.07905 -19.88115 -19.62696 -18.76573 -17.60793 -17.29017 -16.74006 -16.54900 -16.23445 -15.99356 -15.21245 -14.93613 -14.82257 -14.68792 -14.38331 -14.00798 -13.63863 -13.49582 -13.16757 -13.05498 -12.76207 -12.60937 -12.45008 -12.32727 -12.26661 -12.07032 -11.88307 -11.80883 -11.55627 -11.51300 -11.40987 -11.36683 -11.27973 -10.85917 -10.66312 -10.61410 -10.31936 -10.23040 -10.16047 -9.73281 -9.12236 -8.77847 -8.53238 -8.48944 -6.26216 -4.37670 0.33311 2.80394 3.28622 3.38644 3.51902 3.56828 3.88403 4.09238 4.21719 4.33674 4.36279 4.38801 4.61817 4.76326 4.89756 4.96779 4.99674 5.04555 5.06216 5.09582 5.15436 5.27004 5.34000 5.40842 5.50825 5.55107 5.62169 5.64758 5.70892 5.72899 5.81953 5.87061 5.88730 6.01825 6.03760 6.37742 6.47511 6.60378 6.67721 6.75292 6.94535 7.07414 7.45021 8.15833 8.70963 8.87202 9.36460 10.84283 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.018779 B = 0.003766 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.666513 B = 7432.962449 C = 8005.836194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.084 3.916 3 H 0.104 0.896 4 C -0.136 4.136 5 C -0.077 4.077 6 H 0.086 0.914 7 C -0.632 4.632 8 S 2.618 3.382 9 O -0.960 6.960 10 O -0.948 6.948 11 N -1.008 6.008 12 C 0.118 3.882 13 C -0.139 4.139 14 C 0.219 3.781 15 O -0.576 6.576 16 C -0.552 4.552 17 H 0.082 0.918 18 C 0.089 3.911 19 N -0.883 5.883 20 Si 0.857 3.143 21 H -0.276 1.276 22 H -0.294 1.294 23 H -0.227 1.227 24 C 0.124 3.876 25 C -0.183 4.183 26 C 0.060 3.940 27 O -0.376 6.376 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.367 0.633 40 H 0.268 0.732 41 H 0.089 0.911 42 H 0.054 0.946 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.056 0.944 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.551 17.813 5.511 20.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.027 3.973 3 H 0.122 0.878 4 C -0.175 4.175 5 C -0.097 4.097 6 H 0.104 0.896 7 C -0.760 4.760 8 S 2.713 3.287 9 O -0.950 6.950 10 O -0.939 6.939 11 N -0.847 5.847 12 C -0.006 4.006 13 C -0.179 4.179 14 C 0.178 3.822 15 O -0.382 6.382 16 C -0.589 4.589 17 H 0.100 0.900 18 C -0.116 4.116 19 N -0.519 5.519 20 Si 0.684 3.316 21 H -0.202 1.202 22 H -0.221 1.221 23 H -0.150 1.150 24 C -0.001 4.001 25 C -0.221 4.221 26 C -0.017 4.017 27 O -0.295 6.295 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.215 0.785 40 H 0.078 0.922 41 H 0.107 0.893 42 H 0.073 0.927 43 H 0.110 0.890 44 H 0.104 0.896 45 H 0.075 0.925 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.937 17.725 6.932 21.470 hybrid contribution 0.931 0.578 -0.583 1.241 sum -9.006 18.304 6.349 21.365 Atomic orbital electron populations 1.22511 0.96352 1.03056 1.02934 1.22205 0.93565 0.96470 0.85103 0.87785 1.22216 1.02406 0.94154 0.98733 1.20939 1.00497 0.96123 0.92151 0.89592 1.30817 1.13614 1.25081 1.06506 1.04749 0.74324 0.76644 0.72986 1.93556 1.30037 1.87205 1.84222 1.93585 1.81046 1.67175 1.52050 1.58535 1.34957 1.68274 1.22935 1.22038 0.97702 0.99610 0.81299 1.23274 0.98514 0.96754 0.99326 1.19946 0.86615 0.88808 0.86881 1.86439 1.71278 1.52500 1.28028 1.21263 1.04474 0.92885 1.40316 0.90027 1.24981 0.96650 0.95380 0.94625 1.69912 1.17011 1.21998 1.43014 0.87324 0.78313 0.85382 0.80617 1.20216 1.22074 1.15047 1.22438 0.82174 0.95240 1.00209 1.22723 1.03749 1.01000 0.94583 1.22573 0.98934 0.81935 0.98240 1.87995 1.73744 1.24796 1.42975 0.91636 0.91242 0.91689 0.90395 0.90349 0.84796 0.84894 0.90853 0.92136 0.90717 0.90208 0.78532 0.92229 0.89318 0.92743 0.88968 0.89599 0.92549 0.88229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.46 8.65 37.16 0.32 -1.14 16 2 C 0.08 0.74 3.91 -26.68 -0.10 0.64 16 3 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 4 C -0.14 -1.25 4.93 -26.58 -0.13 -1.38 16 5 C -0.08 -0.84 1.96 -90.44 -0.18 -1.02 16 6 H 0.09 0.88 6.63 -51.93 -0.34 0.53 16 7 C -0.63 -7.51 5.63 37.15 0.21 -7.31 16 8 S 2.62 42.31 5.30 -107.50 -0.57 41.74 16 9 O -0.96 -16.86 17.28 -57.54 -0.99 -17.86 16 10 O -0.95 -17.93 15.43 -57.54 -0.89 -18.82 16 11 N -1.01 -18.13 3.62 -111.42 -0.40 -18.53 16 12 C 0.12 1.92 7.06 -2.53 -0.02 1.90 16 13 C -0.14 -2.51 6.23 -24.58 -0.15 -2.67 16 14 C 0.22 4.73 0.69 -89.93 -0.06 4.67 16 15 O -0.58 -11.80 10.55 -35.23 -0.37 -12.17 16 16 C -0.55 -14.40 8.70 -34.44 -0.30 -14.70 16 17 H 0.08 2.30 8.03 -52.49 -0.42 1.88 16 18 C 0.09 2.46 5.47 -17.82 -0.10 2.36 16 19 N -0.88 -25.87 13.96 55.43 0.77 -25.10 16 20 Si 0.86 20.79 23.98 -169.99 -4.08 16.71 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.23 -5.27 5.36 56.52 0.30 -4.97 16 24 C 0.12 2.65 4.40 -3.06 -0.01 2.63 16 25 C -0.18 -2.14 5.01 -26.59 -0.13 -2.27 16 26 C 0.06 0.61 6.51 37.20 0.24 0.85 16 27 O -0.38 -4.12 10.60 -35.23 -0.37 -4.50 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 30 H 0.06 0.53 4.98 -51.93 -0.26 0.27 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.13 1.54 8.14 -51.92 -0.42 1.12 16 34 H 0.13 1.30 8.14 -51.92 -0.42 0.87 16 35 H 0.07 1.09 7.66 -51.93 -0.40 0.69 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 1.17 8.14 -51.94 -0.42 0.75 16 38 H 0.08 1.49 8.04 -51.93 -0.42 1.07 16 39 H 0.37 6.46 9.07 45.56 0.41 6.88 16 40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.09 2.07 7.61 -51.93 -0.40 1.67 16 42 H 0.05 1.15 5.59 -51.93 -0.29 0.86 16 43 H 0.09 1.18 5.84 -51.93 -0.30 0.87 16 44 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.06 0.50 6.34 -51.93 -0.33 0.17 16 46 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 357.12 15.07 5.38 5.38 Total: -1.00 -32.94 357.12 -8.57 -41.50 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -6.63 Total: 9.06 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -0.42 Total: -17.42 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: 0.37 Total: -43.63 kcal Atomic # 8 Polarization: -50.71 SS G_CDS: -2.63 Total: -53.34 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.08 Total: 16.71 kcal Atomic # 16 Polarization: 42.31 SS G_CDS: -0.57 Total: 41.74 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.94 -8.57 -41.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413387514.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.842 kcal (2) G-P(sol) polarization free energy of solvation -32.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds