Wall clock time and date at job start Tue Mar 31 2020 17:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.48167 * 2 1 4 4 C 1.53106 * 109.41726 * 240.01307 * 2 1 3 5 5 C 1.53181 * 109.15666 * 297.48879 * 4 2 1 6 6 H 1.08999 * 109.54143 * 63.06473 * 5 4 2 7 7 C 1.52993 * 109.54134 * 183.24129 * 5 4 2 8 8 S 1.81407 * 109.46838 * 184.82257 * 7 5 4 9 9 O 1.42098 * 110.54434 * 68.37622 * 8 7 5 10 10 O 1.42098 * 110.54402 * 291.62374 * 8 7 5 11 11 N 1.65601 * 104.44639 * 179.97438 * 8 7 5 12 12 C 1.47422 * 125.65165 * 269.95330 * 11 8 7 13 13 C 1.54910 * 104.83785 * 204.16940 * 12 11 8 14 14 C 1.55160 * 101.57874 * 322.99379 * 13 12 11 15 15 O 1.42901 * 110.71824 * 277.13568 * 14 13 12 16 16 C 1.50699 * 110.87312 * 153.93463 * 14 13 12 17 17 H 1.07997 * 119.99948 * 5.03556 * 16 14 13 18 18 C 1.37871 * 120.00061 * 185.03570 * 16 14 13 19 19 N 1.31516 * 120.00214 * 184.92239 * 18 16 14 20 20 Si 1.86803 * 120.00217 * 4.91841 * 18 16 14 21 21 H 1.48497 * 109.47024 * 84.75775 * 20 18 16 22 22 H 1.48503 * 109.47388 * 204.75407 * 20 18 16 23 23 H 1.48502 * 109.47015 * 324.75659 * 20 18 16 24 24 C 1.47025 * 125.64533 * 90.00560 * 11 8 7 25 25 C 1.53176 * 109.10790 * 303.15408 * 5 4 2 26 26 C 1.53088 * 109.16430 * 56.93765 * 25 5 4 27 27 O 1.42907 * 109.47970 * 120.02029 * 2 1 3 28 28 H 1.08996 * 109.47344 * 299.98482 * 1 2 3 29 29 H 1.09011 * 109.46450 * 59.97798 * 1 2 3 30 30 H 1.08998 * 109.47192 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.45500 * 177.62927 * 4 2 1 32 32 H 1.09003 * 109.59929 * 57.43504 * 4 2 1 33 33 H 1.09000 * 109.47134 * 64.82506 * 7 5 4 34 34 H 1.09005 * 109.47548 * 304.82208 * 7 5 4 35 35 H 1.08996 * 110.36660 * 323.01086 * 12 11 8 36 36 H 1.08998 * 110.36068 * 85.21885 * 12 11 8 37 37 H 1.08989 * 111.00549 * 204.92242 * 13 12 11 38 38 H 1.08998 * 111.00212 * 81.06504 * 13 12 11 39 39 H 0.96691 * 114.00062 * 293.52218 * 15 14 13 40 40 H 0.96999 * 120.00445 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.88504 * 59.48161 * 24 11 8 42 42 H 1.08997 * 109.88434 * 298.31320 * 24 11 8 43 43 H 1.09002 * 109.52278 * 176.84332 * 25 5 4 44 44 H 1.09005 * 109.52330 * 296.96506 * 25 5 4 45 45 H 1.08995 * 109.48486 * 62.37191 * 26 25 5 46 46 H 1.09004 * 109.47900 * 182.39910 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0390 -0.7217 -1.2507 5 6 1.5762 -2.1814 -1.2121 6 1 0.4873 -2.2196 -1.2416 7 6 2.1475 -2.9314 -2.4170 8 16 1.4846 -4.6198 -2.4480 9 8 0.0942 -4.6043 -2.7409 10 8 1.9955 -5.3762 -1.3590 11 7 2.1754 -5.3103 -3.7853 12 6 1.6124 -5.2955 -5.1477 13 6 2.2396 -6.5260 -5.8495 14 6 3.6744 -6.5235 -5.2590 15 8 4.5130 -5.6123 -5.9721 16 6 4.2636 -7.9104 -5.2738 17 1 3.7223 -8.7221 -5.7369 18 6 5.4936 -8.1431 -4.6961 19 7 6.0518 -9.3300 -4.7932 20 14 6.3676 -6.7726 -3.7756 21 1 5.8731 -6.7225 -2.3763 22 1 7.8300 -7.0308 -3.7748 23 1 6.0944 -5.4749 -4.4439 24 6 3.4512 -6.0405 -3.8103 25 6 2.0769 -2.8321 0.0811 26 6 1.5646 -2.0284 1.2791 27 8 2.0066 -0.6740 1.1665 28 1 -0.3634 0.5136 0.8901 29 1 -0.3632 0.5142 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1281 -0.6854 -1.2728 32 1 1.6393 -0.2363 -2.1411 33 1 3.2341 -2.9691 -2.3397 34 1 1.8662 -2.4137 -3.3341 35 1 0.5274 -5.3920 -5.1109 36 1 1.8936 -4.3779 -5.6644 37 1 2.2619 -6.3899 -6.9306 38 1 1.7091 -7.4401 -5.5831 39 1 4.6843 -5.8701 -6.8881 40 1 6.9174 -9.4936 -4.3872 41 1 3.4015 -6.8967 -3.1376 42 1 4.2634 -5.3781 -3.5111 43 1 1.7042 -3.8546 0.1423 44 1 3.1669 -2.8408 0.0862 45 1 0.4751 -2.0551 1.2957 46 1 1.9530 -2.4622 2.2006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413387514.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:20 Heat of formation + Delta-G solvation = -189.781880 kcal Electronic energy + Delta-G solvation = -28738.006122 eV Core-core repulsion = 24753.785507 eV Total energy + Delta-G solvation = -3984.220615 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.89962 -40.02151 -38.31049 -37.16474 -36.20697 -36.06278 -34.50442 -33.24647 -31.26878 -30.37017 -30.25140 -28.12694 -26.58367 -24.62499 -23.75497 -23.30192 -21.57234 -20.37372 -20.09694 -19.18561 -18.90275 -17.83796 -17.46187 -17.31014 -16.99961 -16.78535 -16.22105 -16.08220 -15.92386 -15.55617 -15.12797 -14.88072 -14.71253 -14.65413 -14.27619 -14.01658 -13.85467 -13.66763 -13.47760 -13.32097 -13.26178 -13.16245 -13.08759 -12.95321 -12.67404 -12.62247 -12.35836 -12.26764 -12.21805 -12.09069 -12.06002 -11.95671 -11.46492 -11.02149 -10.99480 -10.82422 -10.50810 -10.22937 -9.93203 -8.39047 -6.52252 -0.89124 1.33673 1.37860 1.53240 1.58850 2.33924 2.71211 2.88837 2.93489 2.99016 3.28752 3.44425 3.52029 3.60920 3.82032 3.92116 4.04177 4.09673 4.11267 4.22515 4.31295 4.35270 4.36652 4.38981 4.42853 4.60019 4.61444 4.63283 4.71574 4.83462 4.88025 4.94326 5.01337 5.04242 5.08726 5.10754 5.19021 5.24258 5.28246 5.35416 5.49636 5.54187 6.08603 6.24508 6.60316 7.18024 7.32958 8.75301 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.018779 B = 0.003766 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.666513 B = 7432.962449 C = 8005.836194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.077 3.923 3 H 0.121 0.879 4 C -0.133 4.133 5 C -0.083 4.083 6 H 0.095 0.905 7 C -0.602 4.602 8 S 2.611 3.389 9 O -0.978 6.978 10 O -0.987 6.987 11 N -1.015 6.015 12 C 0.117 3.883 13 C -0.138 4.138 14 C 0.217 3.783 15 O -0.572 6.572 16 C -0.550 4.550 17 H 0.046 0.954 18 C 0.038 3.962 19 N -0.933 5.933 20 Si 0.909 3.091 21 H -0.280 1.280 22 H -0.298 1.298 23 H -0.202 1.202 24 C 0.126 3.874 25 C -0.190 4.190 26 C 0.059 3.941 27 O -0.393 6.393 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.144 0.856 34 H 0.168 0.832 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.062 0.938 39 H 0.382 0.618 40 H 0.268 0.732 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.326 21.931 4.935 24.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.020 3.980 3 H 0.138 0.862 4 C -0.171 4.171 5 C -0.104 4.104 6 H 0.113 0.887 7 C -0.735 4.735 8 S 2.711 3.289 9 O -0.969 6.969 10 O -0.978 6.978 11 N -0.853 5.853 12 C -0.007 4.007 13 C -0.177 4.177 14 C 0.175 3.825 15 O -0.380 6.380 16 C -0.588 4.588 17 H 0.064 0.936 18 C -0.163 4.163 19 N -0.572 5.572 20 Si 0.734 3.266 21 H -0.206 1.206 22 H -0.225 1.225 23 H -0.123 1.123 24 C 0.001 3.999 25 C -0.228 4.228 26 C -0.017 4.017 27 O -0.312 6.312 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.163 0.837 34 H 0.186 0.814 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.120 0.880 38 H 0.080 0.920 39 H 0.231 0.769 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.750 21.801 6.319 25.116 hybrid contribution 1.081 -0.691 -0.406 1.346 sum -9.669 21.110 5.913 23.960 Atomic orbital electron populations 1.22516 0.95526 1.02855 1.03921 1.22432 0.94339 0.96975 0.84243 0.86165 1.22239 1.02424 0.92527 0.99938 1.21092 1.01109 0.97240 0.90913 0.88708 1.30569 1.13879 1.20217 1.08872 1.04828 0.73892 0.78302 0.71848 1.93527 1.31132 1.88127 1.84106 1.93542 1.81325 1.69738 1.53206 1.58492 1.33594 1.69160 1.24049 1.22219 0.98332 0.99799 0.80336 1.23235 0.95943 0.97371 1.01182 1.19767 0.88369 0.86437 0.87907 1.86366 1.71162 1.51388 1.29121 1.21583 1.03883 0.94671 1.38624 0.93566 1.25736 0.97747 0.97202 0.95607 1.70041 1.17756 1.24194 1.45195 0.86521 0.76758 0.83977 0.79358 1.20644 1.22513 1.12344 1.22036 0.84061 0.94728 0.99102 1.22762 1.03391 1.00496 0.96123 1.22600 0.99567 0.81729 0.97838 1.87977 1.74225 1.24861 1.44133 0.91429 0.89582 0.92433 0.90566 0.87937 0.83735 0.81420 0.89547 0.88805 0.88039 0.91971 0.76939 0.92337 0.92673 0.92306 0.90712 0.90251 0.91505 0.87763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.30 8.65 71.98 0.62 -1.68 16 2 C 0.08 1.11 3.91 30.63 0.12 1.23 16 3 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 4 C -0.13 -1.87 4.93 30.69 0.15 -1.72 16 5 C -0.08 -1.56 1.96 -10.68 -0.02 -1.58 16 6 H 0.09 1.63 6.63 -2.39 -0.02 1.62 16 7 C -0.60 -12.06 5.63 71.98 0.40 -11.65 16 8 S 2.61 80.42 5.30 -56.49 -0.30 80.12 16 9 O -0.98 -32.79 17.28 -127.65 -2.21 -34.99 16 10 O -0.99 -37.69 15.43 -127.65 -1.97 -39.66 16 11 N -1.02 -34.66 3.62 -506.43 -1.83 -36.49 16 12 C 0.12 3.43 7.06 86.86 0.61 4.05 16 13 C -0.14 -4.76 6.23 31.99 0.20 -4.56 16 14 C 0.22 9.15 0.69 -10.35 -0.01 9.14 16 15 O -0.57 -21.79 10.55 -148.98 -1.57 -23.36 16 16 C -0.55 -29.34 8.70 25.60 0.22 -29.12 16 17 H 0.05 2.73 8.03 -2.91 -0.02 2.70 16 18 C 0.04 2.12 5.47 84.65 0.46 2.59 16 19 N -0.93 -56.68 13.96 21.45 0.30 -56.38 16 20 Si 0.91 43.10 23.98 68.60 1.65 44.74 16 21 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 22 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 23 H -0.20 -8.66 5.36 99.48 0.53 -8.12 16 24 C 0.13 5.30 4.40 86.73 0.38 5.69 16 25 C -0.19 -4.18 5.01 30.68 0.15 -4.03 16 26 C 0.06 1.12 6.51 72.01 0.47 1.59 16 27 O -0.39 -7.76 10.60 -148.98 -1.58 -9.34 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.06 0.78 4.98 -2.39 -0.01 0.76 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.14 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.17 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.09 2.32 7.66 -2.39 -0.02 2.30 16 36 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 38 H 0.06 2.33 8.04 -2.39 -0.02 2.31 16 39 H 0.38 12.33 9.07 -74.06 -0.67 11.65 16 40 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 41 H 0.05 2.64 7.61 -2.39 -0.02 2.62 16 42 H 0.06 2.38 5.59 -2.39 -0.01 2.37 16 43 H 0.07 1.90 5.84 -2.39 -0.01 1.89 16 44 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 45 H 0.07 1.10 6.34 -2.39 -0.02 1.08 16 46 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -73.71 357.12 -3.60 -77.30 By element: Atomic # 1 Polarization: 27.99 SS G_CDS: 0.14 Total: 28.13 kcal Atomic # 6 Polarization: -33.84 SS G_CDS: 3.77 Total: -30.07 kcal Atomic # 7 Polarization: -91.34 SS G_CDS: -1.53 Total: -92.87 kcal Atomic # 8 Polarization: -100.02 SS G_CDS: -7.33 Total: -107.35 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.65 Total: 44.74 kcal Atomic # 16 Polarization: 80.42 SS G_CDS: -0.30 Total: 80.12 kcal Total: -73.71 -3.60 -77.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413387514.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.478 kcal (2) G-P(sol) polarization free energy of solvation -73.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds