Wall clock time and date at job start Tue Mar 31 2020 16:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 116.99609 * 2 1 4 4 O 1.20824 * 119.99885 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99682 * 180.02562 * 3 2 1 6 6 H 1.08998 * 110.43930 * 57.45374 * 5 3 2 7 7 C 1.54264 * 110.60147 * 294.83436 * 5 3 2 8 8 C 1.54086 * 106.62694 * 217.54923 * 7 5 3 9 9 C 1.54265 * 106.49059 * 0.17432 * 8 7 5 10 10 H 1.08999 * 110.48293 * 264.70447 * 9 8 7 11 11 S 1.81398 * 110.48565 * 142.19727 * 9 8 7 12 12 O 1.42092 * 110.54345 * 311.61559 * 11 9 8 13 13 O 1.42103 * 110.54340 * 174.86223 * 11 9 8 14 14 N 1.65601 * 104.44911 * 63.24304 * 11 9 8 15 15 C 1.46497 * 120.00340 * 89.99823 * 14 11 9 16 16 C 1.50694 * 109.47115 * 265.00050 * 15 14 11 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.46504 * 119.99689 * 269.99973 * 14 11 9 25 25 C 1.52996 * 109.47439 * 120.00194 * 24 14 11 26 26 C 1.52999 * 109.47064 * 240.00055 * 24 14 11 27 27 C 1.54882 * 104.31557 * 23.45064 * 9 8 7 28 28 H 1.09003 * 109.46855 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47190 * 299.99890 * 1 2 3 30 30 H 1.08999 * 109.47599 * 60.00154 * 1 2 3 31 31 H 1.09002 * 110.02962 * 336.94658 * 7 5 3 32 32 H 1.09004 * 110.03382 * 98.37440 * 7 5 3 33 33 H 1.09002 * 110.15865 * 240.88352 * 8 7 5 34 34 H 1.09001 * 110.00996 * 119.38321 * 8 7 5 35 35 H 1.09007 * 109.47078 * 144.99689 * 15 14 11 36 36 H 1.09003 * 109.46733 * 25.00412 * 15 14 11 37 37 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 38 38 H 1.08997 * 109.47256 * 0.02562 * 24 14 11 39 39 H 1.09006 * 109.47062 * 59.99568 * 25 24 14 40 40 H 1.08992 * 109.47410 * 179.97438 * 25 24 14 41 41 H 1.09008 * 109.47046 * 300.00213 * 25 24 14 42 42 H 1.09002 * 109.47487 * 59.99792 * 26 24 14 43 43 H 1.09001 * 109.47319 * 180.02562 * 26 24 14 44 44 H 1.08997 * 109.47064 * 300.00093 * 26 24 14 45 45 H 1.09004 * 110.75625 * 80.43788 * 27 9 8 46 46 H 1.09000 * 110.76348 * 203.81071 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 1 3.9747 0.7463 -0.8618 7 6 4.1405 0.6974 1.3095 8 6 5.3471 1.5780 1.6879 9 6 5.4584 2.6612 0.5952 10 1 6.1729 2.3587 -0.1704 11 16 5.9450 4.2498 1.3234 12 8 5.1412 4.5457 2.4571 13 8 6.1628 5.2185 0.3068 14 7 7.4516 3.9719 1.9521 15 6 8.6419 4.1940 1.1274 16 6 9.0617 2.8942 0.4910 17 1 8.4986 1.9927 0.6820 18 6 10.1656 2.8556 -0.3344 19 7 10.8517 3.9533 -0.5666 20 14 10.6864 1.2442 -1.1227 21 1 11.8929 1.4694 -1.9588 22 1 10.9964 0.2519 -0.0624 23 1 9.5835 0.7305 -1.9742 24 6 7.5941 3.5040 3.3330 25 6 8.3077 2.1507 3.3419 26 6 8.4141 4.5181 4.1331 27 6 4.0316 2.7523 -0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.3871 0.7358 2.0963 32 1 4.4658 -0.3311 1.1533 33 1 6.2568 0.9780 1.7130 34 1 5.1792 2.0433 2.6592 35 1 9.4517 4.5710 1.7523 36 1 8.4140 4.9227 0.3494 37 1 11.6284 3.9261 -1.1470 38 1 6.6076 3.3971 3.7841 39 1 9.2943 2.2571 2.8907 40 1 8.4141 1.8028 4.3694 41 1 7.7236 1.4281 2.7719 42 1 7.9058 5.4823 4.1268 43 1 8.5205 4.1698 5.1605 44 1 9.4005 4.6246 3.6819 45 1 3.3864 3.3605 0.6335 46 1 4.0613 3.1479 -1.0158 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001423676013.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:36 Heat of formation + Delta-G solvation = -170.036223 kcal Electronic energy + Delta-G solvation = -28852.568521 eV Core-core repulsion = 24869.204142 eV Total energy + Delta-G solvation = -3983.364379 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.81229 -38.00117 -36.94389 -36.53006 -36.41043 -35.32799 -32.83431 -30.61815 -30.27506 -29.01392 -27.66615 -26.98932 -26.49025 -23.08123 -22.69513 -21.13870 -20.38780 -20.00669 -18.33996 -17.70387 -17.20490 -16.93681 -16.72557 -16.46289 -15.93568 -15.58118 -15.18307 -14.52565 -14.05695 -13.78554 -13.70493 -13.56501 -13.37338 -13.15833 -12.86405 -12.50283 -12.36153 -12.18120 -12.04551 -11.80461 -11.57331 -11.52175 -11.45595 -11.42421 -11.20435 -11.15427 -11.02954 -11.00735 -10.93690 -10.83027 -10.74886 -10.49668 -10.38340 -10.33510 -10.18618 -9.73935 -9.59282 -8.49718 -7.99317 -6.12127 -4.18268 0.88723 2.01475 2.49203 3.22871 3.27386 3.30073 3.34193 4.11620 4.18328 4.33476 4.42500 4.65877 4.79772 4.85117 4.90979 4.94489 5.10727 5.17822 5.20930 5.25596 5.27085 5.37336 5.43209 5.52250 5.66404 5.70750 5.73766 5.84601 5.92214 6.00962 6.07221 6.15617 6.17787 6.19570 6.33243 6.49834 6.59602 6.80163 7.11575 7.42056 7.45506 7.54982 7.70500 7.84979 8.14910 8.85383 9.46789 10.95687 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012730 B = 0.004357 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.982713 B = 6425.040486 C = 7376.635312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.468 3.532 4 O -0.503 6.503 5 C -0.079 4.079 6 H 0.120 0.880 7 C -0.105 4.105 8 C -0.099 4.099 9 C -0.604 4.604 10 H 0.154 0.846 11 S 2.613 3.387 12 O -0.974 6.974 13 O -0.954 6.954 14 N -0.977 5.977 15 C 0.243 3.757 16 C -0.540 4.540 17 H 0.064 0.936 18 C 0.065 3.935 19 N -0.888 5.888 20 Si 0.890 3.110 21 H -0.287 1.287 22 H -0.276 1.276 23 H -0.277 1.277 24 C 0.150 3.850 25 C -0.162 4.162 26 C -0.156 4.156 27 C -0.090 4.090 28 H 0.100 0.900 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.043 0.957 36 H 0.052 0.948 37 H 0.265 0.735 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.045 0.955 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.067 0.933 45 H 0.088 0.912 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.414 -9.065 4.496 16.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.310 3.690 4 O -0.390 6.390 5 C -0.099 4.099 6 H 0.138 0.862 7 C -0.143 4.143 8 C -0.137 4.137 9 C -0.711 4.711 10 H 0.172 0.828 11 S 2.706 3.294 12 O -0.964 6.964 13 O -0.945 6.945 14 N -0.816 5.816 15 C 0.121 3.879 16 C -0.580 4.580 17 H 0.082 0.918 18 C -0.138 4.138 19 N -0.526 5.526 20 Si 0.718 3.282 21 H -0.213 1.213 22 H -0.202 1.202 23 H -0.202 1.202 24 C 0.043 3.957 25 C -0.221 4.221 26 C -0.215 4.215 27 C -0.129 4.129 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.106 0.894 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.938 -7.859 4.413 16.598 hybrid contribution 0.388 -1.601 -0.861 1.859 sum -13.550 -9.460 3.552 16.903 Atomic orbital electron populations 1.23275 0.76492 1.03627 1.02618 1.86527 1.23322 1.33501 1.84112 1.23771 0.91931 0.81293 0.71961 1.90679 1.67077 1.36352 1.44933 1.21916 0.86451 0.99103 1.02393 0.86231 1.22095 0.97435 1.00074 0.94679 1.21983 0.99458 0.95804 0.96423 1.31591 1.05772 1.23006 1.10779 0.82779 1.04776 0.73664 0.76534 0.74416 1.93511 1.69925 1.83247 1.49733 1.93564 1.84398 1.55742 1.60746 1.57440 1.22874 1.81753 1.19531 1.19206 0.81734 0.97109 0.89872 1.21578 1.12593 0.95274 1.28510 0.91757 1.24947 0.96401 0.96211 0.96257 1.69923 1.18589 1.26996 1.37072 0.86697 0.78185 0.83905 0.79431 1.21279 1.20191 1.20239 1.20645 0.99270 0.94196 0.81550 1.22313 1.03723 0.95960 1.00082 1.22081 1.01510 0.99011 0.98914 1.22248 0.92348 0.95185 1.03148 0.88123 0.91851 0.91894 0.90967 0.89806 0.88837 0.90381 0.93923 0.93034 0.92553 0.90164 0.89628 0.93607 0.92709 0.92886 0.92552 0.91359 0.89352 0.88935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.88 10.57 -39.26 -0.41 -4.30 16 3 C 0.47 5.92 7.12 36.00 0.26 6.18 16 4 O -0.50 -7.74 15.47 -18.75 -0.29 -8.03 16 5 C -0.08 -0.92 3.36 -90.11 -0.30 -1.23 16 6 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 7 C -0.10 -1.13 6.37 -25.50 -0.16 -1.29 16 8 C -0.10 -1.26 5.93 -25.50 -0.15 -1.41 16 9 C -0.60 -9.20 3.58 -25.08 -0.09 -9.29 16 10 H 0.15 2.37 8.14 -51.93 -0.42 1.95 16 11 S 2.61 50.17 4.85 -107.50 -0.52 49.65 16 12 O -0.97 -19.39 15.96 -57.54 -0.92 -20.31 16 13 O -0.95 -21.93 16.53 -57.54 -0.95 -22.88 16 14 N -0.98 -19.14 2.65 -108.58 -0.29 -19.43 16 15 C 0.24 5.70 4.98 -5.20 -0.03 5.68 16 16 C -0.54 -13.05 7.53 -34.44 -0.26 -13.31 16 17 H 0.06 1.44 7.07 -52.49 -0.37 1.07 16 18 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -24.55 13.29 55.43 0.74 -23.82 16 20 Si 0.89 19.78 29.54 -169.99 -5.02 14.76 16 21 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 24 C 0.15 2.51 3.11 -67.93 -0.21 2.30 16 25 C -0.16 -2.52 8.20 37.16 0.30 -2.21 16 26 C -0.16 -2.48 9.16 37.16 0.34 -2.14 16 27 C -0.09 -1.27 5.37 -24.74 -0.13 -1.40 16 28 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 30 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 31 H 0.07 0.74 7.84 -51.93 -0.41 0.34 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.09 1.14 6.35 -51.93 -0.33 0.81 16 34 H 0.08 0.99 6.81 -51.93 -0.35 0.64 16 35 H 0.04 1.05 6.45 -51.92 -0.33 0.71 16 36 H 0.05 1.37 6.82 -51.93 -0.35 1.01 16 37 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 38 H 0.08 1.24 6.37 -51.93 -0.33 0.91 16 39 H 0.08 1.56 6.65 -51.93 -0.35 1.22 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.79 5.65 -51.92 -0.29 0.50 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 1.17 6.69 -51.93 -0.35 0.83 16 45 H 0.09 1.32 7.38 -51.93 -0.38 0.93 16 46 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 374.69 15.07 5.65 5.65 Total: -1.00 -31.98 374.69 -8.70 -40.67 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -7.21 Total: 3.25 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: 0.54 Total: -15.22 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.45 Total: -43.24 kcal Atomic # 8 Polarization: -52.94 SS G_CDS: -2.57 Total: -55.51 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Atomic # 16 Polarization: 50.17 SS G_CDS: -0.52 Total: 49.65 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.98 -8.70 -40.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001423676013.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.361 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds