Wall clock time and date at job start Tue Mar 31 2020 16:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 116.99609 * 2 1 4 4 O 1.20824 * 119.99885 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99682 * 180.02562 * 3 2 1 6 6 H 1.08998 * 110.43930 * 57.45374 * 5 3 2 7 7 C 1.54264 * 110.60147 * 294.83436 * 5 3 2 8 8 C 1.54086 * 106.62694 * 217.54923 * 7 5 3 9 9 C 1.54265 * 106.49059 * 0.17432 * 8 7 5 10 10 H 1.08999 * 110.48293 * 264.70447 * 9 8 7 11 11 S 1.81398 * 110.48565 * 142.19727 * 9 8 7 12 12 O 1.42092 * 110.54345 * 311.61559 * 11 9 8 13 13 O 1.42103 * 110.54340 * 174.86223 * 11 9 8 14 14 N 1.65601 * 104.44911 * 63.24304 * 11 9 8 15 15 C 1.46497 * 120.00340 * 89.99823 * 14 11 9 16 16 C 1.50694 * 109.47115 * 265.00050 * 15 14 11 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.46504 * 119.99689 * 269.99973 * 14 11 9 25 25 C 1.52996 * 109.47439 * 120.00194 * 24 14 11 26 26 C 1.52999 * 109.47064 * 240.00055 * 24 14 11 27 27 C 1.54882 * 104.31557 * 23.45064 * 9 8 7 28 28 H 1.09003 * 109.46855 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47190 * 299.99890 * 1 2 3 30 30 H 1.08999 * 109.47599 * 60.00154 * 1 2 3 31 31 H 1.09002 * 110.02962 * 336.94658 * 7 5 3 32 32 H 1.09004 * 110.03382 * 98.37440 * 7 5 3 33 33 H 1.09002 * 110.15865 * 240.88352 * 8 7 5 34 34 H 1.09001 * 110.00996 * 119.38321 * 8 7 5 35 35 H 1.09007 * 109.47078 * 144.99689 * 15 14 11 36 36 H 1.09003 * 109.46733 * 25.00412 * 15 14 11 37 37 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 38 38 H 1.08997 * 109.47256 * 0.02562 * 24 14 11 39 39 H 1.09006 * 109.47062 * 59.99568 * 25 24 14 40 40 H 1.08992 * 109.47410 * 179.97438 * 25 24 14 41 41 H 1.09008 * 109.47046 * 300.00213 * 25 24 14 42 42 H 1.09002 * 109.47487 * 59.99792 * 26 24 14 43 43 H 1.09001 * 109.47319 * 180.02562 * 26 24 14 44 44 H 1.08997 * 109.47064 * 300.00093 * 26 24 14 45 45 H 1.09004 * 110.75625 * 80.43788 * 27 9 8 46 46 H 1.09000 * 110.76348 * 203.81071 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 1 3.9747 0.7463 -0.8618 7 6 4.1405 0.6974 1.3095 8 6 5.3471 1.5780 1.6879 9 6 5.4584 2.6612 0.5952 10 1 6.1729 2.3587 -0.1704 11 16 5.9450 4.2498 1.3234 12 8 5.1412 4.5457 2.4571 13 8 6.1628 5.2185 0.3068 14 7 7.4516 3.9719 1.9521 15 6 8.6419 4.1940 1.1274 16 6 9.0617 2.8942 0.4910 17 1 8.4986 1.9927 0.6820 18 6 10.1656 2.8556 -0.3344 19 7 10.8517 3.9533 -0.5666 20 14 10.6864 1.2442 -1.1227 21 1 11.8929 1.4694 -1.9588 22 1 10.9964 0.2519 -0.0624 23 1 9.5835 0.7305 -1.9742 24 6 7.5941 3.5040 3.3330 25 6 8.3077 2.1507 3.3419 26 6 8.4141 4.5181 4.1331 27 6 4.0316 2.7523 -0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.3871 0.7358 2.0963 32 1 4.4658 -0.3311 1.1533 33 1 6.2568 0.9780 1.7130 34 1 5.1792 2.0433 2.6592 35 1 9.4517 4.5710 1.7523 36 1 8.4140 4.9227 0.3494 37 1 11.6284 3.9261 -1.1470 38 1 6.6076 3.3971 3.7841 39 1 9.2943 2.2571 2.8907 40 1 8.4141 1.8028 4.3694 41 1 7.7236 1.4281 2.7719 42 1 7.9058 5.4823 4.1268 43 1 8.5205 4.1698 5.1605 44 1 9.4005 4.6246 3.6819 45 1 3.3864 3.3605 0.6335 46 1 4.0613 3.1479 -1.0158 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001423676013.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:35 Heat of formation + Delta-G solvation = -190.813161 kcal Electronic energy + Delta-G solvation = -28853.469477 eV Core-core repulsion = 24869.204142 eV Total energy + Delta-G solvation = -3984.265335 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.74950 -39.03637 -38.39176 -38.12259 -37.41787 -36.96084 -34.71242 -32.17859 -31.29380 -30.03129 -28.76665 -28.40352 -27.79438 -24.70190 -23.89987 -22.29704 -21.59270 -21.09798 -19.71025 -18.93108 -18.55069 -18.41390 -18.05717 -17.66517 -17.17576 -16.74713 -16.58081 -16.24056 -15.34368 -14.96556 -14.85490 -14.76230 -14.63449 -14.28586 -14.01222 -13.97146 -13.71304 -13.50030 -13.34431 -13.18400 -12.98086 -12.93524 -12.89121 -12.67364 -12.58583 -12.52409 -12.37144 -12.29976 -12.18423 -12.05064 -11.98613 -11.82042 -11.76057 -11.62275 -11.43198 -11.26645 -11.13349 -10.46930 -9.61692 -8.07325 -6.19417 -0.61912 1.07359 1.50020 1.51067 1.57938 1.64342 1.82426 2.49105 2.89949 3.04337 3.14715 3.25085 3.42014 3.76138 3.93033 3.97377 4.07352 4.18938 4.25211 4.30180 4.32223 4.37728 4.41113 4.43370 4.53487 4.63821 4.65324 4.71373 4.87813 4.96028 4.99673 5.00666 5.07364 5.15897 5.22124 5.26782 5.30921 5.36733 5.50046 5.65513 5.81328 5.91278 6.08921 6.21173 6.64306 6.92603 7.49621 9.00988 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012730 B = 0.004357 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.982713 B = 6425.040486 C = 7376.635312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.355 6.355 3 C 0.471 3.529 4 O -0.539 6.539 5 C -0.075 4.075 6 H 0.146 0.854 7 C -0.098 4.098 8 C -0.102 4.102 9 C -0.579 4.579 10 H 0.158 0.842 11 S 2.602 3.398 12 O -0.987 6.987 13 O -1.005 7.005 14 N -0.982 5.982 15 C 0.260 3.740 16 C -0.530 4.530 17 H 0.087 0.913 18 C 0.008 3.992 19 N -0.934 5.934 20 Si 0.955 3.045 21 H -0.298 1.298 22 H -0.262 1.262 23 H -0.264 1.264 24 C 0.140 3.860 25 C -0.156 4.156 26 C -0.157 4.157 27 C -0.100 4.100 28 H 0.134 0.866 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.022 0.978 36 H 0.011 0.989 37 H 0.262 0.738 38 H 0.098 0.902 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.041 0.959 43 H 0.089 0.911 44 H 0.046 0.954 45 H 0.075 0.925 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.666 -13.188 5.163 20.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C 0.315 3.685 4 O -0.429 6.429 5 C -0.095 4.095 6 H 0.163 0.837 7 C -0.136 4.136 8 C -0.141 4.141 9 C -0.691 4.691 10 H 0.176 0.824 11 S 2.701 3.299 12 O -0.978 6.978 13 O -0.996 6.996 14 N -0.820 5.820 15 C 0.136 3.864 16 C -0.569 4.569 17 H 0.105 0.895 18 C -0.191 4.191 19 N -0.575 5.575 20 Si 0.781 3.219 21 H -0.224 1.224 22 H -0.187 1.187 23 H -0.189 1.189 24 C 0.034 3.966 25 C -0.215 4.215 26 C -0.216 4.216 27 C -0.140 4.140 28 H 0.152 0.848 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.133 0.867 33 H 0.126 0.874 34 H 0.097 0.903 35 H 0.040 0.960 36 H 0.029 0.971 37 H 0.070 0.930 38 H 0.116 0.884 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.061 0.939 43 H 0.108 0.892 44 H 0.066 0.934 45 H 0.093 0.907 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.195 -11.964 5.132 20.010 hybrid contribution 0.641 -0.302 -1.015 1.238 sum -14.554 -12.266 4.117 19.474 Atomic orbital electron populations 1.23582 0.74868 1.05829 1.02477 1.86512 1.24883 1.32229 1.83490 1.23905 0.92243 0.81296 0.71018 1.90675 1.67884 1.37599 1.46739 1.21942 0.86135 0.97175 1.04217 0.83661 1.22127 0.96437 1.00988 0.94088 1.22151 1.01353 0.95253 0.95298 1.31269 1.06529 1.19825 1.11518 0.82375 1.04836 0.73401 0.77818 0.73839 1.93482 1.69751 1.84348 1.50187 1.93500 1.84984 1.59232 1.61881 1.57277 1.21596 1.82507 1.20633 1.18697 0.82455 0.96239 0.88963 1.21919 1.11976 0.95838 1.27159 0.89509 1.25826 0.96780 0.99324 0.97186 1.70091 1.19384 1.29508 1.38471 0.85648 0.77554 0.80035 0.78701 1.22388 1.18668 1.18912 1.20976 1.00523 0.95101 0.79967 1.22245 1.01816 0.95289 1.02128 1.22100 1.00060 0.98728 1.00692 1.22338 0.91212 0.97388 1.03022 0.84758 0.92072 0.92078 0.90356 0.86746 0.87353 0.90282 0.95986 0.97124 0.92956 0.88415 0.92657 0.90416 0.91336 0.93941 0.89182 0.93448 0.90657 0.88579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.53 16 2 O -0.36 -6.59 10.57 -51.42 -0.54 -7.14 16 3 C 0.47 10.82 7.12 71.23 0.51 11.33 16 4 O -0.54 -16.04 15.47 21.97 0.34 -15.70 16 5 C -0.07 -1.52 3.36 -10.47 -0.04 -1.55 16 6 H 0.15 2.23 8.14 -2.39 -0.02 2.21 16 7 C -0.10 -1.69 6.37 31.39 0.20 -1.49 16 8 C -0.10 -2.26 5.93 31.39 0.19 -2.07 16 9 C -0.58 -16.69 3.58 31.67 0.11 -16.57 16 10 H 0.16 4.54 8.14 -2.39 -0.02 4.52 16 11 S 2.60 101.66 4.85 -56.49 -0.27 101.39 16 12 O -0.99 -39.65 15.96 -127.65 -2.04 -41.68 16 13 O -1.01 -48.78 16.53 -127.65 -2.11 -50.89 16 14 N -0.98 -38.95 2.65 -497.42 -1.32 -40.26 16 15 C 0.26 12.71 4.98 85.63 0.43 13.14 16 16 C -0.53 -25.53 7.53 25.60 0.19 -25.34 16 17 H 0.09 3.69 7.07 -2.91 -0.02 3.67 16 18 C 0.01 0.39 5.46 84.66 0.46 0.85 16 19 N -0.93 -53.34 13.29 21.45 0.28 -53.05 16 20 Si 0.96 39.86 29.54 68.60 2.03 41.89 16 21 H -0.30 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 23 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 24 C 0.14 4.52 3.11 44.99 0.14 4.66 16 25 C -0.16 -4.45 8.20 71.98 0.59 -3.86 16 26 C -0.16 -4.97 9.16 71.98 0.66 -4.31 16 27 C -0.10 -2.69 5.37 31.89 0.17 -2.52 16 28 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 0.85 8.13 -2.38 -0.02 0.83 16 30 H 0.06 0.84 8.13 -2.39 -0.02 0.82 16 31 H 0.08 1.29 7.84 -2.39 -0.02 1.27 16 32 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.11 2.11 6.35 -2.39 -0.02 2.10 16 34 H 0.08 1.76 6.81 -2.39 -0.02 1.75 16 35 H 0.02 1.16 6.45 -2.38 -0.02 1.14 16 36 H 0.01 0.61 6.82 -2.39 -0.02 0.59 16 37 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 38 H 0.10 2.84 6.37 -2.39 -0.02 2.83 16 39 H 0.05 1.94 6.65 -2.38 -0.02 1.92 16 40 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.07 1.73 5.65 -2.38 -0.01 1.72 16 42 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.05 1.68 6.69 -2.39 -0.02 1.66 16 45 H 0.07 2.23 7.38 -2.38 -0.02 2.21 16 46 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -72.59 374.69 2.16 -70.43 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.98 Total: 21.22 kcal Atomic # 6 Polarization: -31.01 SS G_CDS: 4.81 Total: -26.20 kcal Atomic # 7 Polarization: -92.29 SS G_CDS: -1.03 Total: -93.32 kcal Atomic # 8 Polarization: -111.06 SS G_CDS: -4.35 Total: -115.41 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.89 kcal Atomic # 16 Polarization: 101.66 SS G_CDS: -0.27 Total: 101.39 kcal Total: -72.59 2.16 -70.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001423676013.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.380 kcal (2) G-P(sol) polarization free energy of solvation -72.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds