Wall clock time and date at job start Tue Mar 31 2020 18:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.50698 * 109.47177 * 119.99481 * 2 1 3 13 13 O 1.20822 * 119.99840 * 120.00361 * 12 2 1 14 14 O 1.34228 * 120.00316 * 300.00594 * 12 2 1 15 15 C 1.45202 * 117.00107 * 180.02562 * 14 12 2 16 16 C 1.52999 * 109.46910 * 180.02562 * 15 14 12 17 17 O 1.42893 * 109.47528 * 64.99495 * 16 15 14 18 18 C 1.35973 * 117.00227 * 179.97438 * 17 16 15 19 19 C 1.38748 * 119.98481 * 0.02562 * 18 17 16 20 20 C 1.38072 * 120.03069 * 180.02562 * 19 18 17 21 21 C 1.38849 * 119.97057 * 359.97438 * 20 19 18 22 22 C 1.38840 * 119.96057 * 0.02562 * 21 20 19 23 23 C 1.38081 * 120.02024 * 359.74052 * 22 21 20 24 24 C 1.50684 * 119.84259 * 179.97438 * 22 21 20 25 25 C 1.52899 * 109.54008 * 326.07728 * 24 22 21 26 26 C 1.50498 * 109.91091 * 48.63781 * 25 24 22 27 27 O 1.21288 * 119.62152 * 144.76911 * 26 25 24 28 28 N 1.34562 * 120.75598 * 324.74045 * 26 25 24 29 29 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 30 30 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 31 31 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.46935 * 299.99478 * 15 14 12 34 34 H 1.08998 * 109.46968 * 59.99840 * 15 14 12 35 35 H 1.09001 * 109.47168 * 185.00107 * 16 15 14 36 36 H 1.09003 * 109.47133 * 304.99455 * 16 15 14 37 37 H 1.07996 * 119.98296 * 359.97438 * 19 18 17 38 38 H 1.07999 * 120.01190 * 179.97438 * 20 19 18 39 39 H 1.08000 * 120.00205 * 180.25284 * 23 22 21 40 40 H 1.08994 * 109.46327 * 206.04903 * 24 22 21 41 41 H 1.09005 * 109.44222 * 86.09037 * 24 22 21 42 42 H 1.09002 * 109.39432 * 288.49909 * 25 24 22 43 43 H 1.08996 * 109.39161 * 168.77273 * 25 24 22 44 44 H 0.96996 * 119.77879 * 180.82806 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 6 2.0323 -0.7103 1.2305 13 8 2.7270 -1.6926 1.1197 14 8 1.7080 -0.2517 2.4496 15 6 2.2277 -0.9855 3.5897 16 6 1.7554 -0.3190 4.8834 17 8 0.3338 -0.4243 4.9821 18 6 -0.2507 0.1211 6.0820 19 6 0.5297 0.7447 7.0448 20 6 -0.0628 1.2983 8.1623 21 6 -1.4404 1.2313 8.3220 22 6 -2.2207 0.6071 7.3581 23 6 -1.6275 0.0580 6.2386 24 6 -3.7154 0.5354 7.5344 25 6 -4.0491 0.3986 9.0203 26 6 -3.2895 1.4279 9.8130 27 8 -3.8047 1.9344 10.7872 28 7 -2.0450 1.7924 9.4536 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.7088 1.1611 -3.4845 33 1 1.8643 -2.0126 3.5570 34 1 3.3172 -0.9843 3.5566 35 1 2.2167 -0.8154 5.7372 36 1 2.0422 0.7326 4.8760 37 1 1.6013 0.7963 6.9205 38 1 0.5451 1.7833 8.9118 39 1 -2.2352 -0.4239 5.4869 40 1 -4.1039 -0.3278 6.9940 41 1 -4.1711 1.4446 7.1420 42 1 -3.7730 -0.5986 9.3630 43 1 -5.1191 0.5467 9.1660 44 1 -1.5637 2.4484 9.9817 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001523913954.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:47 Heat of formation + Delta-G solvation = -166.602581 kcal Electronic energy + Delta-G solvation = -27331.247640 eV Core-core repulsion = 23212.588204 eV Total energy + Delta-G solvation = -4118.659437 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.01766 -41.35940 -40.58955 -38.88948 -37.44582 -35.90775 -35.65732 -34.92037 -32.82705 -31.85207 -30.92347 -29.38973 -27.27291 -25.95831 -25.30609 -24.21537 -23.65626 -23.04970 -21.63745 -20.27079 -19.06413 -18.66121 -18.59278 -18.08979 -18.06636 -17.56964 -17.26748 -16.89624 -16.52865 -16.31899 -15.93060 -15.82358 -15.14099 -14.85140 -14.69405 -14.64992 -14.55625 -14.11001 -13.95586 -13.71398 -13.53330 -13.42005 -13.06533 -12.97048 -12.77085 -12.63405 -12.58851 -12.48174 -12.27182 -12.19271 -12.04419 -11.82122 -11.56627 -11.16385 -11.10032 -11.03960 -10.95367 -10.52219 -9.85668 -8.64217 -8.19110 -6.32264 0.19345 0.29454 1.42369 1.43770 1.46365 1.48603 1.55063 1.90971 2.04940 2.18718 2.44877 2.73537 3.10934 3.39305 3.63978 3.70645 3.83686 3.91147 4.01163 4.08420 4.16146 4.19878 4.28725 4.34066 4.42092 4.46694 4.63647 4.70601 4.81083 4.87410 4.92039 4.94476 4.96074 5.02113 5.10547 5.19835 5.34773 5.38988 5.48296 5.59993 5.70023 5.76447 5.89518 6.11465 6.12144 6.46400 6.74333 6.95873 7.06388 7.36482 8.87299 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.024718 B = 0.001954 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.524781 B =14329.510248 C =15028.664797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.048 3.952 3 H 0.051 0.949 4 C -0.537 4.537 5 H 0.057 0.943 6 C 0.021 3.979 7 N -0.909 5.909 8 Si 0.964 3.036 9 H -0.273 1.273 10 H -0.275 1.275 11 H -0.275 1.275 12 C 0.474 3.526 13 O -0.543 6.543 14 O -0.360 6.360 15 C 0.053 3.947 16 C 0.067 3.933 17 O -0.330 6.330 18 C 0.101 3.899 19 C -0.183 4.183 20 C -0.103 4.103 21 C 0.103 3.897 22 C -0.083 4.083 23 C -0.130 4.130 24 C -0.077 4.077 25 C -0.133 4.133 26 C 0.516 3.484 27 O -0.578 6.578 28 N -0.654 5.654 29 H 0.046 0.954 30 H 0.077 0.923 31 H 0.027 0.973 32 H 0.268 0.732 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.120 0.880 36 H 0.086 0.914 37 H 0.154 0.846 38 H 0.156 0.844 39 H 0.140 0.860 40 H 0.114 0.886 41 H 0.090 0.910 42 H 0.117 0.883 43 H 0.121 0.879 44 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.173 0.767 24.129 24.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.029 3.971 3 H 0.069 0.931 4 C -0.575 4.575 5 H 0.075 0.925 6 C -0.179 4.179 7 N -0.548 5.548 8 Si 0.789 3.211 9 H -0.198 1.198 10 H -0.200 1.200 11 H -0.200 1.200 12 C 0.320 3.680 13 O -0.433 6.433 14 O -0.277 6.277 15 C -0.021 4.021 16 C -0.007 4.007 17 O -0.244 6.244 18 C 0.055 3.945 19 C -0.202 4.202 20 C -0.123 4.123 21 C 0.009 3.991 22 C -0.085 4.085 23 C -0.149 4.149 24 C -0.113 4.113 25 C -0.172 4.172 26 C 0.307 3.693 27 O -0.457 6.457 28 N -0.298 5.298 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.120 0.880 35 H 0.137 0.863 36 H 0.104 0.896 37 H 0.172 0.828 38 H 0.173 0.827 39 H 0.158 0.842 40 H 0.132 0.868 41 H 0.108 0.892 42 H 0.135 0.865 43 H 0.140 0.860 44 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -5.556 0.632 24.296 24.931 hybrid contribution 0.991 -0.082 -0.612 1.168 sum -4.565 0.550 23.684 24.126 Atomic orbital electron populations 1.21535 0.94499 0.99774 1.01841 1.18677 0.95822 0.96202 0.86359 0.93125 1.21255 1.32537 1.13258 0.90467 0.92482 1.25661 0.94930 0.95702 1.01632 1.69965 1.36620 1.23461 1.24719 0.85462 0.78359 0.78749 0.78524 1.19806 1.20029 1.19974 1.24761 0.75904 0.82509 0.84826 1.90475 1.37599 1.27743 1.87466 1.86616 1.70166 1.55710 1.15186 1.23308 0.99896 0.96207 0.82662 1.23029 0.78871 1.02849 0.95941 1.86160 1.23195 1.74532 1.40514 1.19206 0.93024 0.95272 0.86983 1.21323 1.01315 1.02593 0.94960 1.20810 0.91960 1.00799 0.98736 1.17643 0.92443 1.00666 0.88382 1.19470 0.96470 0.99657 0.92943 1.20268 0.91948 1.03827 0.98860 1.20522 0.90018 1.05528 0.95274 1.21729 1.02173 0.98809 0.94494 1.21295 0.81140 0.82790 0.84118 1.90761 1.68376 1.56703 1.29893 1.43513 1.16325 1.42914 1.27062 0.93493 0.90449 0.95373 0.92284 0.91217 0.87985 0.86275 0.89572 0.82801 0.82669 0.84185 0.86777 0.89217 0.86450 0.86045 0.74661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.63 8.90 71.98 0.64 -4.99 16 2 C 0.05 2.47 2.74 -12.29 -0.03 2.44 16 3 H 0.05 2.69 8.14 -2.38 -0.02 2.67 16 4 C -0.54 -30.35 8.37 25.60 0.21 -30.13 16 5 H 0.06 3.37 6.76 -2.91 -0.02 3.35 16 6 C 0.02 1.13 5.30 84.66 0.45 1.58 16 7 N -0.91 -50.30 11.32 21.45 0.24 -50.06 16 8 Si 0.96 43.56 29.54 68.60 2.03 45.59 16 9 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 12 C 0.47 21.97 7.25 71.24 0.52 22.48 16 13 O -0.54 -27.28 15.21 21.98 0.33 -26.94 16 14 O -0.36 -13.59 10.09 -48.75 -0.49 -14.09 16 15 C 0.05 1.44 5.85 71.98 0.42 1.86 16 16 C 0.07 1.29 5.13 71.98 0.37 1.66 16 17 O -0.33 -8.00 10.11 -89.83 -0.91 -8.91 16 18 C 0.10 2.01 6.69 22.51 0.15 2.16 16 19 C -0.18 -2.70 9.03 22.35 0.20 -2.50 16 20 C -0.10 -1.31 9.92 22.38 0.22 -1.09 16 21 C 0.10 1.52 6.51 38.12 0.25 1.77 16 22 C -0.08 -1.26 5.66 -19.76 -0.11 -1.37 16 23 C -0.13 -2.38 9.63 22.35 0.22 -2.16 16 24 C -0.08 -0.80 5.99 29.81 0.18 -0.62 16 25 C -0.13 -1.44 6.07 29.75 0.18 -1.26 16 26 C 0.52 9.02 7.72 87.63 0.68 9.69 16 27 O -0.58 -14.66 17.91 -3.05 -0.05 -14.71 16 28 N -0.65 -9.40 5.37 -303.94 -1.63 -11.03 16 29 H 0.05 1.96 8.11 -2.39 -0.02 1.94 16 30 H 0.08 3.96 6.07 -2.39 -0.01 3.95 16 31 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 33 H 0.07 1.99 8.13 -2.39 -0.02 1.97 16 34 H 0.10 2.47 8.13 -2.39 -0.02 2.45 16 35 H 0.12 1.36 7.66 -2.39 -0.02 1.34 16 36 H 0.09 1.46 7.66 -2.39 -0.02 1.44 16 37 H 0.15 1.57 6.29 -2.91 -0.02 1.55 16 38 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 39 H 0.14 2.45 8.06 -2.91 -0.02 2.42 16 40 H 0.11 0.80 8.06 -2.39 -0.02 0.78 16 41 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 42 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.41 4.81 8.84 -92.71 -0.82 3.99 16 Total: -1.00 -72.77 372.47 4.28 -68.50 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.22 Total: 12.14 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 4.54 Total: -0.48 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: -1.39 Total: -61.09 kcal Atomic # 8 Polarization: -63.53 SS G_CDS: -1.12 Total: -64.65 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -72.77 4.28 -68.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523913954.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.106 kcal (2) G-P(sol) polarization free energy of solvation -72.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds