Wall clock time and date at job start Tue Mar 31 2020 18:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47081 * 2 1 4 4 C 1.50697 * 109.46939 * 120.00525 * 2 1 3 5 5 H 1.08009 * 120.00260 * 120.00109 * 4 2 1 6 6 C 1.37878 * 119.99831 * 299.99734 * 4 2 1 7 7 N 1.31504 * 120.00175 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99645 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47175 * 90.00212 * 8 6 4 10 10 H 1.48506 * 109.46897 * 209.99981 * 8 6 4 11 11 H 1.48497 * 109.47377 * 329.99916 * 8 6 4 12 12 C 1.50702 * 109.46678 * 240.00137 * 2 1 3 13 13 O 1.20831 * 120.00006 * 239.99578 * 12 2 1 14 14 O 1.34226 * 120.00003 * 60.00463 * 12 2 1 15 15 C 1.45205 * 116.99966 * 179.97438 * 14 12 2 16 16 C 1.53005 * 109.47258 * 179.97438 * 15 14 12 17 17 O 1.42901 * 109.46913 * 64.99596 * 16 15 14 18 18 C 1.35963 * 116.99849 * 179.97438 * 17 16 15 19 19 C 1.38751 * 119.98417 * 0.02562 * 18 17 16 20 20 C 1.38075 * 120.03192 * 180.02562 * 19 18 17 21 21 C 1.38857 * 119.96752 * 359.97438 * 20 19 18 22 22 C 1.38691 * 119.85369 * 0.21449 * 21 20 19 23 23 C 1.38071 * 120.06303 * 0.03911 * 22 21 20 24 24 C 1.50674 * 119.80059 * 180.25410 * 22 21 20 25 25 C 1.52897 * 109.53673 * 325.77524 * 24 22 21 26 26 C 1.50502 * 109.90804 * 48.65241 * 25 24 22 27 27 O 1.21290 * 119.61705 * 144.80689 * 26 25 24 28 28 N 1.34565 * 120.75944 * 324.79000 * 26 25 24 29 29 H 1.09007 * 109.47004 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46834 * 299.99520 * 1 2 3 31 31 H 1.09001 * 109.47019 * 59.99581 * 1 2 3 32 32 H 0.97004 * 120.00165 * 179.97438 * 7 6 4 33 33 H 1.08994 * 109.47163 * 59.99657 * 15 14 12 34 34 H 1.09002 * 109.46924 * 300.00071 * 15 14 12 35 35 H 1.09000 * 109.46796 * 305.00196 * 16 15 14 36 36 H 1.09000 * 109.47165 * 184.99904 * 16 15 14 37 37 H 1.07998 * 119.98191 * 0.02562 * 19 18 17 38 38 H 1.08000 * 120.01601 * 179.97438 * 20 19 18 39 39 H 1.08004 * 120.00877 * 180.23013 * 23 22 21 40 40 H 1.08998 * 109.46093 * 205.74900 * 24 22 21 41 41 H 1.08997 * 109.44370 * 85.78724 * 24 22 21 42 42 H 1.09005 * 109.39881 * 288.52200 * 25 24 22 43 43 H 1.08996 * 109.40158 * 168.79026 * 25 24 22 44 44 H 0.97001 * 119.77865 * 180.75184 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5887 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9436 0.8300 2.6034 8 14 2.3225 -1.1199 4.0078 9 1 3.6305 -0.5444 4.4118 10 1 1.3444 -0.9494 5.1122 11 1 2.4879 -2.5657 3.7120 12 6 2.0323 -0.7104 -1.2305 13 8 2.7270 -1.6928 -1.1197 14 8 1.7080 -0.2517 -2.4496 15 6 2.2275 -0.9856 -3.5897 16 6 1.7554 -0.3191 -4.8835 17 8 2.3267 0.9870 -4.9823 18 6 2.0062 1.7193 -6.0822 19 6 1.1588 1.1900 -7.0449 20 6 0.8330 1.9326 -8.1624 21 6 1.3536 3.2099 -8.3224 22 6 2.2035 3.7345 -7.3601 23 6 2.5318 2.9878 -6.2461 24 6 2.7631 5.1229 -7.5320 25 6 3.0025 5.3974 -9.0170 26 6 1.7805 5.0215 -9.8111 27 8 1.4726 5.6773 -10.7838 28 7 1.0259 3.9659 -9.4545 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.7090 1.1612 3.4845 33 1 1.8641 -2.0127 -3.5570 34 1 3.3171 -0.9846 -3.5566 35 1 0.6683 -0.2405 -4.8759 36 1 2.0704 -0.9190 -5.7373 37 1 0.7537 0.1966 -6.9200 38 1 0.1737 1.5201 -8.9118 39 1 3.1908 3.3986 -5.4955 40 1 3.7059 5.2039 -6.9911 41 1 2.0545 5.8511 -7.1377 42 1 3.8531 4.8092 -9.3614 43 1 3.2151 6.4569 -9.1596 44 1 0.2475 3.7298 -9.9829 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001523913956.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:51 Heat of formation + Delta-G solvation = -146.323958 kcal Electronic energy + Delta-G solvation = -27275.737203 eV Core-core repulsion = 23157.957113 eV Total energy + Delta-G solvation = -4117.780090 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.36650 -40.01169 -39.48521 -38.08110 -35.85814 -34.89573 -34.35951 -33.90231 -31.30381 -30.59764 -30.08176 -28.65210 -25.25287 -25.20842 -24.08317 -23.11827 -22.91632 -22.05521 -19.91335 -19.55121 -18.39919 -17.88154 -17.38684 -16.91302 -16.51503 -16.17288 -15.89241 -15.72541 -15.36924 -15.28180 -15.12598 -14.44842 -14.27850 -14.07116 -13.90411 -13.56699 -13.23453 -13.05116 -12.90060 -12.59297 -12.47812 -12.34059 -11.88818 -11.81253 -11.54638 -11.32053 -11.12876 -11.05195 -10.81398 -10.73111 -10.42509 -10.35754 -10.29237 -10.11567 -10.07164 -9.23786 -9.15042 -9.06236 -8.46483 -7.94831 -6.11886 -4.17396 0.85131 0.95614 2.18128 2.67457 2.96226 3.27063 3.29667 3.32809 3.35900 3.39588 3.46359 3.98937 4.21972 4.31269 4.39733 4.47888 4.66686 4.68962 4.80919 4.83109 4.95711 5.02796 5.05310 5.21416 5.27139 5.33096 5.37853 5.47891 5.55423 5.60670 5.71002 5.81977 6.01165 6.11421 6.23584 6.39169 6.64647 6.78100 6.84365 6.86078 7.15442 7.21324 7.42174 7.61938 7.72506 7.92820 8.12504 8.81061 8.91818 9.48154 10.95500 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.024060 B = 0.001927 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.457057 B =14526.798483 C =15071.967398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.057 3.943 3 H 0.065 0.935 4 C -0.513 4.513 5 H 0.075 0.925 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.905 3.095 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.466 3.534 13 O -0.519 6.519 14 O -0.360 6.360 15 C 0.062 3.938 16 C 0.063 3.937 17 O -0.301 6.301 18 C 0.123 3.877 19 C -0.182 4.182 20 C -0.107 4.107 21 C 0.111 3.889 22 C -0.081 4.081 23 C -0.117 4.117 24 C -0.079 4.079 25 C -0.138 4.138 26 C 0.521 3.479 27 O -0.535 6.535 28 N -0.660 5.660 29 H 0.030 0.970 30 H 0.096 0.904 31 H 0.023 0.977 32 H 0.263 0.737 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.135 0.865 38 H 0.130 0.870 39 H 0.141 0.859 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.608 5.082 -23.191 23.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.039 3.961 3 H 0.083 0.917 4 C -0.551 4.551 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.732 3.268 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.311 3.689 13 O -0.406 6.406 14 O -0.278 6.278 15 C -0.012 4.012 16 C -0.012 4.012 17 O -0.214 6.214 18 C 0.077 3.923 19 C -0.201 4.201 20 C -0.127 4.127 21 C 0.016 3.984 22 C -0.084 4.084 23 C -0.136 4.136 24 C -0.116 4.116 25 C -0.177 4.177 26 C 0.309 3.691 27 O -0.412 6.412 28 N -0.305 5.305 29 H 0.050 0.950 30 H 0.114 0.886 31 H 0.042 0.958 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.153 0.847 38 H 0.148 0.852 39 H 0.158 0.842 40 H 0.114 0.886 41 H 0.105 0.895 42 H 0.122 0.878 43 H 0.128 0.872 44 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 0.874 5.392 -23.345 23.976 hybrid contribution -0.189 -1.011 0.438 1.118 sum 0.686 4.380 -22.907 23.332 Atomic orbital electron populations 1.21730 0.95620 0.99973 1.01759 1.18763 0.94852 0.97040 0.85494 0.91741 1.21128 1.31907 1.13247 0.88771 0.90651 1.24941 0.94910 0.95040 0.99147 1.69875 1.36480 1.22799 1.23867 0.86377 0.78514 0.80135 0.81749 1.20515 1.21142 1.19707 1.25377 0.76496 0.83128 0.83893 1.90500 1.36449 1.26835 1.86777 1.86686 1.70182 1.55665 1.15253 1.22844 1.00166 0.95003 0.83215 1.22945 0.99145 0.82063 0.97007 1.86224 1.67961 1.28089 1.39165 1.18846 0.94732 0.91913 0.86807 1.21119 1.02078 1.01595 0.95344 1.20525 1.01568 0.92022 0.98612 1.17438 1.00546 0.91959 0.88410 1.19211 0.99108 0.96436 0.93601 1.20030 1.03020 0.92229 0.98334 1.20464 1.02768 0.93128 0.95223 1.21691 0.96132 1.04924 0.94985 1.20763 0.84799 0.78945 0.84554 1.90781 1.71323 1.50992 1.28065 1.43542 1.30014 1.29735 1.27231 0.95032 0.88557 0.95792 0.92680 0.89534 0.90636 0.90665 0.90178 0.84735 0.85181 0.84155 0.88588 0.89453 0.87793 0.87227 0.75307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.90 37.16 0.33 -2.77 16 2 C 0.06 1.45 2.74 -92.92 -0.25 1.19 16 3 H 0.06 1.69 8.14 -51.93 -0.42 1.26 16 4 C -0.51 -14.24 8.37 -34.44 -0.29 -14.53 16 5 H 0.08 2.18 6.76 -52.48 -0.35 1.82 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -24.62 11.32 55.43 0.63 -23.99 16 8 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 C 0.47 10.73 7.25 36.01 0.26 10.99 16 13 O -0.52 -12.89 15.21 -18.75 -0.29 -13.17 16 14 O -0.36 -6.91 10.09 -42.01 -0.42 -7.33 16 15 C 0.06 0.89 5.85 37.16 0.22 1.11 16 16 C 0.06 0.68 5.13 37.16 0.19 0.87 16 17 O -0.30 -3.85 10.11 -23.19 -0.23 -4.08 16 18 C 0.12 1.32 6.67 -39.38 -0.26 1.06 16 19 C -0.18 -1.57 9.03 -39.45 -0.36 -1.93 16 20 C -0.11 -0.81 9.92 -39.41 -0.39 -1.20 16 21 C 0.11 0.92 6.51 -83.72 -0.54 0.37 16 22 C -0.08 -0.68 5.65 -104.53 -0.59 -1.27 16 23 C -0.12 -1.13 9.60 -39.63 -0.38 -1.51 16 24 C -0.08 -0.48 5.99 -27.95 -0.17 -0.65 16 25 C -0.14 -0.86 6.08 -28.03 -0.17 -1.03 16 26 C 0.52 4.81 7.72 -11.18 -0.09 4.72 16 27 O -0.54 -6.86 17.91 5.55 0.10 -6.76 16 28 N -0.66 -5.21 5.37 -9.99 -0.05 -5.26 16 29 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.10 2.43 6.07 -51.93 -0.32 2.11 16 31 H 0.02 0.48 8.11 -51.93 -0.42 0.06 16 32 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 33 H 0.09 1.12 8.13 -51.93 -0.42 0.70 16 34 H 0.08 1.10 8.13 -51.93 -0.42 0.68 16 35 H 0.08 0.74 7.66 -51.93 -0.40 0.34 16 36 H 0.08 0.60 7.66 -51.93 -0.40 0.20 16 37 H 0.13 0.92 6.29 -52.49 -0.33 0.59 16 38 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 39 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 40 H 0.10 0.44 8.06 -51.93 -0.42 0.02 16 41 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.41 2.64 8.84 -40.82 -0.36 2.28 16 LS Contribution 372.43 15.07 5.61 5.61 Total: -1.00 -33.46 372.43 -8.20 -41.66 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -5.93 Total: 0.08 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -2.59 Total: -3.00 kcal Atomic # 7 Polarization: -29.83 SS G_CDS: 0.57 Total: -29.26 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -0.84 Total: -31.35 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.46 -8.20 -41.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523913956.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.660 kcal (2) G-P(sol) polarization free energy of solvation -33.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds