Wall clock time and date at job start Tue Mar 31 2020 18:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47081 * 2 1 4 4 C 1.50697 * 109.46939 * 120.00525 * 2 1 3 5 5 H 1.08009 * 120.00260 * 120.00109 * 4 2 1 6 6 C 1.37878 * 119.99831 * 299.99734 * 4 2 1 7 7 N 1.31504 * 120.00175 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99645 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47175 * 90.00212 * 8 6 4 10 10 H 1.48506 * 109.46897 * 209.99981 * 8 6 4 11 11 H 1.48497 * 109.47377 * 329.99916 * 8 6 4 12 12 C 1.50702 * 109.46678 * 240.00137 * 2 1 3 13 13 O 1.20831 * 120.00006 * 239.99578 * 12 2 1 14 14 O 1.34226 * 120.00003 * 60.00463 * 12 2 1 15 15 C 1.45205 * 116.99966 * 179.97438 * 14 12 2 16 16 C 1.53005 * 109.47258 * 179.97438 * 15 14 12 17 17 O 1.42901 * 109.46913 * 64.99596 * 16 15 14 18 18 C 1.35963 * 116.99849 * 179.97438 * 17 16 15 19 19 C 1.38751 * 119.98417 * 0.02562 * 18 17 16 20 20 C 1.38075 * 120.03192 * 180.02562 * 19 18 17 21 21 C 1.38857 * 119.96752 * 359.97438 * 20 19 18 22 22 C 1.38691 * 119.85369 * 0.21449 * 21 20 19 23 23 C 1.38071 * 120.06303 * 0.03911 * 22 21 20 24 24 C 1.50674 * 119.80059 * 180.25410 * 22 21 20 25 25 C 1.52897 * 109.53673 * 325.77524 * 24 22 21 26 26 C 1.50502 * 109.90804 * 48.65241 * 25 24 22 27 27 O 1.21290 * 119.61705 * 144.80689 * 26 25 24 28 28 N 1.34565 * 120.75944 * 324.79000 * 26 25 24 29 29 H 1.09007 * 109.47004 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46834 * 299.99520 * 1 2 3 31 31 H 1.09001 * 109.47019 * 59.99581 * 1 2 3 32 32 H 0.97004 * 120.00165 * 179.97438 * 7 6 4 33 33 H 1.08994 * 109.47163 * 59.99657 * 15 14 12 34 34 H 1.09002 * 109.46924 * 300.00071 * 15 14 12 35 35 H 1.09000 * 109.46796 * 305.00196 * 16 15 14 36 36 H 1.09000 * 109.47165 * 184.99904 * 16 15 14 37 37 H 1.07998 * 119.98191 * 0.02562 * 19 18 17 38 38 H 1.08000 * 120.01601 * 179.97438 * 20 19 18 39 39 H 1.08004 * 120.00877 * 180.23013 * 23 22 21 40 40 H 1.08998 * 109.46093 * 205.74900 * 24 22 21 41 41 H 1.08997 * 109.44370 * 85.78724 * 24 22 21 42 42 H 1.09005 * 109.39881 * 288.52200 * 25 24 22 43 43 H 1.08996 * 109.40158 * 168.79026 * 25 24 22 44 44 H 0.97001 * 119.77865 * 180.75184 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5887 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9436 0.8300 2.6034 8 14 2.3225 -1.1199 4.0078 9 1 3.6305 -0.5444 4.4118 10 1 1.3444 -0.9494 5.1122 11 1 2.4879 -2.5657 3.7120 12 6 2.0323 -0.7104 -1.2305 13 8 2.7270 -1.6928 -1.1197 14 8 1.7080 -0.2517 -2.4496 15 6 2.2275 -0.9856 -3.5897 16 6 1.7554 -0.3191 -4.8835 17 8 2.3267 0.9870 -4.9823 18 6 2.0062 1.7193 -6.0822 19 6 1.1588 1.1900 -7.0449 20 6 0.8330 1.9326 -8.1624 21 6 1.3536 3.2099 -8.3224 22 6 2.2035 3.7345 -7.3601 23 6 2.5318 2.9878 -6.2461 24 6 2.7631 5.1229 -7.5320 25 6 3.0025 5.3974 -9.0170 26 6 1.7805 5.0215 -9.8111 27 8 1.4726 5.6773 -10.7838 28 7 1.0259 3.9659 -9.4545 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.7090 1.1612 3.4845 33 1 1.8641 -2.0127 -3.5570 34 1 3.3171 -0.9846 -3.5566 35 1 0.6683 -0.2405 -4.8759 36 1 2.0704 -0.9190 -5.7373 37 1 0.7537 0.1966 -6.9200 38 1 0.1737 1.5201 -8.9118 39 1 3.1908 3.3986 -5.4955 40 1 3.7059 5.2039 -6.9911 41 1 2.0545 5.8511 -7.1377 42 1 3.8531 4.8092 -9.3614 43 1 3.2151 6.4569 -9.1596 44 1 0.2475 3.7298 -9.9829 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001523913956.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:50 Heat of formation + Delta-G solvation = -166.473723 kcal Electronic energy + Delta-G solvation = -27276.610962 eV Core-core repulsion = 23157.957113 eV Total energy + Delta-G solvation = -4118.653849 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.03447 -41.35911 -40.60214 -38.89874 -37.44614 -35.90879 -35.67038 -34.92198 -32.82890 -31.86119 -30.92385 -29.40923 -27.27360 -25.96026 -25.30527 -24.22122 -23.65637 -23.05864 -21.63757 -20.27352 -19.06492 -18.66836 -18.60483 -18.10571 -18.08403 -17.51931 -17.21034 -16.95969 -16.55762 -16.29225 -15.95345 -15.82656 -15.15794 -14.91726 -14.73801 -14.60267 -14.32312 -14.15706 -14.07399 -13.75369 -13.58266 -13.33628 -13.05843 -12.97979 -12.77230 -12.64165 -12.58482 -12.47107 -12.28669 -12.18989 -12.04422 -11.81926 -11.57208 -11.16593 -11.09958 -11.03863 -10.95804 -10.52426 -9.86139 -8.65170 -8.19142 -6.32376 0.19078 0.29540 1.42638 1.43527 1.46352 1.48538 1.54938 1.90800 2.04622 2.18762 2.44808 2.73746 3.10930 3.39091 3.63697 3.70673 3.83499 3.91105 4.00913 4.08434 4.16269 4.19776 4.28721 4.34009 4.42159 4.46792 4.63598 4.70626 4.80904 4.87102 4.91806 4.94060 4.95831 5.01280 5.10320 5.19604 5.34766 5.39161 5.48260 5.59962 5.70057 5.76267 5.90014 6.11541 6.11980 6.46147 6.74253 6.95661 7.06361 7.36434 8.87275 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.024060 B = 0.001927 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.457057 B =14526.798483 C =15071.967398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.048 3.952 3 H 0.048 0.952 4 C -0.537 4.537 5 H 0.057 0.943 6 C 0.021 3.979 7 N -0.909 5.909 8 Si 0.964 3.036 9 H -0.274 1.274 10 H -0.274 1.274 11 H -0.275 1.275 12 C 0.475 3.525 13 O -0.543 6.543 14 O -0.359 6.359 15 C 0.053 3.947 16 C 0.068 3.932 17 O -0.331 6.331 18 C 0.101 3.899 19 C -0.182 4.182 20 C -0.103 4.103 21 C 0.104 3.896 22 C -0.083 4.083 23 C -0.131 4.131 24 C -0.077 4.077 25 C -0.133 4.133 26 C 0.516 3.484 27 O -0.577 6.577 28 N -0.654 5.654 29 H 0.031 0.969 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.268 0.732 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.120 0.880 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.140 0.860 40 H 0.114 0.886 41 H 0.089 0.911 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.366 4.683 -24.169 24.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.029 3.971 3 H 0.066 0.934 4 C -0.575 4.575 5 H 0.075 0.925 6 C -0.179 4.179 7 N -0.548 5.548 8 Si 0.789 3.211 9 H -0.199 1.199 10 H -0.199 1.199 11 H -0.200 1.200 12 C 0.320 3.680 13 O -0.433 6.433 14 O -0.277 6.277 15 C -0.021 4.021 16 C -0.007 4.007 17 O -0.245 6.245 18 C 0.055 3.945 19 C -0.201 4.201 20 C -0.123 4.123 21 C 0.009 3.991 22 C -0.085 4.085 23 C -0.150 4.150 24 C -0.114 4.114 25 C -0.172 4.172 26 C 0.307 3.693 27 O -0.457 6.457 28 N -0.298 5.298 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.137 0.863 37 H 0.172 0.828 38 H 0.174 0.826 39 H 0.157 0.843 40 H 0.132 0.868 41 H 0.108 0.892 42 H 0.136 0.864 43 H 0.140 0.860 44 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 0.614 4.995 -24.337 24.852 hybrid contribution -0.123 -0.864 0.627 1.075 sum 0.491 4.131 -23.710 24.072 Atomic orbital electron populations 1.21547 0.94289 0.99960 1.01930 1.18676 0.96007 0.96060 0.86365 0.93450 1.21256 1.32545 1.13252 0.90470 0.92480 1.25657 0.94936 0.95695 1.01635 1.69961 1.36671 1.23422 1.24719 0.85463 0.78335 0.78774 0.78531 1.19917 1.19929 1.19951 1.24759 0.75980 0.82422 0.84823 1.90478 1.37508 1.27834 1.87470 1.86617 1.69851 1.56020 1.15184 1.23309 1.00060 0.96041 0.82662 1.23036 0.99689 0.82021 0.95941 1.86161 1.68816 1.28982 1.40534 1.19087 0.96076 0.92303 0.86992 1.21335 1.01421 1.02496 0.94885 1.20822 1.01190 0.91544 0.98731 1.17605 1.00684 0.92398 0.88394 1.19420 0.98830 0.97210 0.93090 1.20159 1.03499 0.92414 0.98925 1.20521 1.03651 0.91883 0.95304 1.21730 0.95082 1.05913 0.94478 1.21295 0.85372 0.78550 0.84120 1.90762 1.72553 1.52400 1.29997 1.43510 1.29992 1.29276 1.27020 0.95016 0.90530 0.93328 0.92284 0.87994 0.91213 0.89531 0.86264 0.82774 0.82639 0.84260 0.86805 0.89226 0.86446 0.86048 0.74643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.90 71.98 0.64 -4.92 16 2 C 0.05 2.45 2.74 -12.29 -0.03 2.42 16 3 H 0.05 2.56 8.14 -2.39 -0.02 2.54 16 4 C -0.54 -30.38 8.37 25.60 0.21 -30.16 16 5 H 0.06 3.38 6.76 -2.91 -0.02 3.36 16 6 C 0.02 1.13 5.30 84.66 0.45 1.58 16 7 N -0.91 -50.35 11.32 21.45 0.24 -50.11 16 8 Si 0.96 43.58 29.54 68.60 2.03 45.60 16 9 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 11 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 12 C 0.47 21.99 7.25 71.24 0.52 22.50 16 13 O -0.54 -27.29 15.21 21.95 0.33 -26.95 16 14 O -0.36 -13.60 10.09 -48.74 -0.49 -14.09 16 15 C 0.05 1.44 5.85 71.98 0.42 1.86 16 16 C 0.07 1.29 5.13 71.98 0.37 1.66 16 17 O -0.33 -8.06 10.11 -89.72 -0.91 -8.96 16 18 C 0.10 2.02 6.67 22.40 0.15 2.17 16 19 C -0.18 -2.69 9.03 22.35 0.20 -2.49 16 20 C -0.10 -1.30 9.92 22.38 0.22 -1.08 16 21 C 0.10 1.53 6.51 38.09 0.25 1.78 16 22 C -0.08 -1.26 5.65 -19.80 -0.11 -1.38 16 23 C -0.13 -2.41 9.60 22.24 0.21 -2.19 16 24 C -0.08 -0.81 5.99 29.81 0.18 -0.63 16 25 C -0.13 -1.44 6.08 29.75 0.18 -1.26 16 26 C 0.52 9.02 7.72 87.63 0.68 9.69 16 27 O -0.58 -14.65 17.91 -3.06 -0.05 -14.70 16 28 N -0.65 -9.38 5.37 -304.04 -1.63 -11.01 16 29 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.08 3.88 6.07 -2.39 -0.01 3.86 16 31 H 0.05 1.96 8.11 -2.39 -0.02 1.94 16 32 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 33 H 0.10 2.47 8.13 -2.39 -0.02 2.45 16 34 H 0.07 1.99 8.13 -2.39 -0.02 1.97 16 35 H 0.09 1.46 7.66 -2.39 -0.02 1.44 16 36 H 0.12 1.36 7.66 -2.39 -0.02 1.34 16 37 H 0.15 1.57 6.29 -2.91 -0.02 1.55 16 38 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 39 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 40 H 0.11 0.81 8.06 -2.39 -0.02 0.79 16 41 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 43 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.41 4.79 8.84 -92.71 -0.82 3.97 16 Total: -1.00 -72.89 372.43 4.27 -68.61 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 0.22 Total: 12.07 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 4.54 Total: -0.45 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: -1.39 Total: -61.13 kcal Atomic # 8 Polarization: -63.59 SS G_CDS: -1.12 Total: -64.71 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -72.89 4.27 -68.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523913956.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.859 kcal (2) G-P(sol) polarization free energy of solvation -72.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds