Wall clock time and date at job start Tue Mar 31 2020 17:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50696 * 109.47132 * 2 1 4 4 O 1.21283 * 120.00063 * 359.97438 * 3 2 1 5 5 N 1.34780 * 120.00166 * 180.02562 * 3 2 1 6 6 C 1.47024 * 125.64738 * 0.03430 * 5 3 2 7 7 C 1.54327 * 107.27030 * 181.02795 * 6 5 3 8 8 C 1.55153 * 102.93975 * 22.19459 * 7 6 5 9 9 H 1.09000 * 111.03620 * 82.59402 * 8 7 6 10 10 C 1.50703 * 111.00015 * 206.41961 * 8 7 6 11 11 O 1.20836 * 119.99579 * 112.19664 * 10 8 7 12 12 O 1.34263 * 120.00433 * 292.20203 * 10 8 7 13 13 C 1.35920 * 116.99883 * 185.08093 * 12 10 8 14 14 C 1.38829 * 120.01915 * 255.14109 * 13 12 10 15 15 C 1.38184 * 120.07951 * 180.02562 * 14 13 12 16 16 C 1.38157 * 120.12820 * 0.02562 * 15 14 13 17 17 C 1.38889 * 120.03673 * 359.97438 * 16 15 14 18 18 O 1.35759 * 120.03893 * 179.97438 * 17 16 15 19 19 C 1.34829 * 117.00110 * 174.28387 * 18 17 16 20 20 H 1.08008 * 119.99574 * 354.56352 * 19 18 17 21 21 C 1.38651 * 120.00284 * 174.57244 * 19 18 17 22 22 N 1.31557 * 120.00031 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99828 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.46868 * 89.99654 * 23 21 19 25 25 H 1.48495 * 109.47147 * 210.00282 * 23 21 19 26 26 H 1.48502 * 109.46788 * 329.99989 * 23 21 19 27 27 C 1.38576 * 120.02530 * 75.16867 * 13 12 10 28 28 C 1.47429 * 125.64777 * 180.02562 * 5 3 2 29 29 H 1.09000 * 109.47153 * 60.00325 * 1 2 3 30 30 H 1.09007 * 109.47109 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47163 * 299.99911 * 1 2 3 32 32 H 1.09000 * 109.47584 * 239.99765 * 2 1 3 33 33 H 1.09000 * 109.47153 * 119.99674 * 2 1 3 34 34 H 1.08996 * 109.88681 * 300.44723 * 6 5 3 35 35 H 1.09000 * 109.88153 * 61.61001 * 6 5 3 36 36 H 1.09002 * 110.71609 * 263.83125 * 7 6 5 37 37 H 1.08996 * 110.71919 * 140.56047 * 7 6 5 38 38 H 1.07999 * 119.95767 * 0.29793 * 14 13 12 39 39 H 1.08010 * 119.93849 * 179.97438 * 15 14 13 40 40 H 1.08000 * 119.98119 * 180.02562 * 16 15 14 41 41 H 0.97001 * 119.99414 * 179.97438 * 22 21 19 42 42 H 1.08003 * 120.05815 * 359.94509 * 27 13 12 43 43 H 1.08996 * 110.37007 * 37.06850 * 28 5 3 44 44 H 1.08997 * 110.36233 * 274.74057 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.4181 0.6491 -0.0018 7 6 5.7690 1.3949 0.0244 8 6 5.3894 2.7806 0.6102 9 1 5.3417 2.7455 1.6986 10 6 6.3523 3.8441 0.1487 11 8 5.9774 4.7141 -0.6013 12 8 7.6267 3.8248 0.5709 13 6 8.4143 4.8699 0.2035 14 6 9.3643 4.7060 -0.7955 15 6 10.1660 5.7675 -1.1697 16 6 10.0253 6.9946 -0.5509 17 6 9.0766 7.1642 0.4492 18 8 8.9386 8.3699 1.0577 19 6 7.9226 8.5005 1.9343 20 1 7.2112 7.6976 2.0599 21 6 7.7909 9.6655 2.6745 22 7 6.7992 9.7931 3.5294 23 14 9.0216 11.0540 2.4576 24 1 8.5486 11.9726 1.3910 25 1 9.1532 11.8026 3.7333 26 1 10.3415 10.4904 2.0760 27 6 8.2700 6.0994 0.8261 28 6 3.9832 3.0020 -0.0001 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.3265 0.0170 0.8814 35 1 4.3476 0.0414 -0.9040 36 1 6.1715 1.4992 -0.9832 37 1 6.4794 0.8832 0.6736 38 1 9.4738 3.7490 -1.2839 39 1 10.9047 5.6373 -1.9469 40 1 10.6529 7.8227 -0.8455 41 1 6.7074 10.6081 4.0475 42 1 7.5311 6.2289 1.6032 43 1 3.4063 3.6912 0.6166 44 1 4.0672 3.3818 -1.0182 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525862772.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:58 Heat of formation + Delta-G solvation = -108.701570 kcal Electronic energy + Delta-G solvation = -27901.827607 eV Core-core repulsion = 23785.678947 eV Total energy + Delta-G solvation = -4116.148660 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.25655 -40.23536 -39.05815 -37.93145 -36.91421 -35.89199 -33.26266 -32.45717 -32.14008 -29.92570 -29.55441 -29.19882 -26.12562 -25.35521 -23.90788 -22.95477 -21.97872 -21.55884 -20.27365 -19.50347 -18.27515 -18.15289 -17.68309 -17.49382 -16.36536 -15.98191 -15.87722 -15.60090 -15.36869 -14.96271 -14.60931 -14.09133 -14.00430 -13.89950 -13.74500 -13.64460 -13.27883 -13.13727 -12.68984 -12.62832 -12.56726 -12.31976 -12.27827 -11.98473 -11.84800 -11.58287 -11.53428 -11.42715 -11.27251 -11.16662 -10.82625 -10.54511 -10.38885 -10.28586 -10.10503 -9.60215 -8.98362 -8.94410 -8.31192 -7.56277 -6.48037 -4.16005 1.57489 2.04822 2.18697 2.37107 2.50179 3.03757 3.19244 3.22384 3.35603 3.88042 4.04120 4.18089 4.30682 4.36822 4.49738 4.70261 4.71000 4.74639 4.79063 4.86907 4.94031 5.01540 5.07227 5.20960 5.36027 5.44639 5.44867 5.50391 5.60079 5.62667 5.63731 5.70945 5.81222 5.86153 5.95351 6.01819 6.18473 6.32563 6.74724 6.87783 6.94535 7.01129 7.16602 7.36182 7.66725 7.88747 7.91247 8.02639 8.85757 9.43853 10.59245 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014767 B = 0.002619 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.702864 B =10687.303353 C =12212.989439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.138 4.138 3 C 0.526 3.474 4 O -0.534 6.534 5 N -0.623 5.623 6 C 0.101 3.899 7 C -0.119 4.119 8 C -0.095 4.095 9 H 0.126 0.874 10 C 0.467 3.533 11 O -0.476 6.476 12 O -0.292 6.292 13 C 0.119 3.881 14 C -0.202 4.202 15 C -0.066 4.066 16 C -0.185 4.185 17 C 0.170 3.830 18 O -0.209 6.209 19 C -0.392 4.392 20 H 0.105 0.895 21 C 0.065 3.935 22 N -0.874 5.874 23 Si 0.907 3.093 24 H -0.272 1.272 25 H -0.281 1.281 26 H -0.259 1.259 27 C -0.222 4.222 28 C 0.120 3.880 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.116 0.884 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.281 0.719 42 H 0.138 0.862 43 H 0.091 0.909 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.692 -22.558 -6.712 23.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.178 4.178 3 C 0.315 3.685 4 O -0.410 6.410 5 N -0.359 5.359 6 C -0.022 4.022 7 C -0.157 4.157 8 C -0.115 4.115 9 H 0.144 0.856 10 C 0.308 3.692 11 O -0.360 6.360 12 O -0.207 6.207 13 C 0.079 3.921 14 C -0.221 4.221 15 C -0.085 4.085 16 C -0.204 4.204 17 C 0.117 3.883 18 O -0.113 6.113 19 C -0.467 4.467 20 H 0.122 0.878 21 C -0.139 4.139 22 N -0.511 5.511 23 Si 0.732 3.268 24 H -0.197 1.197 25 H -0.207 1.207 26 H -0.183 1.183 27 C -0.241 4.241 28 C -0.002 4.002 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.119 0.881 38 H 0.134 0.866 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.091 0.909 42 H 0.156 0.844 43 H 0.110 0.890 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.330 -21.431 -6.804 22.730 hybrid contribution 0.469 0.651 0.176 0.822 sum -2.860 -20.780 -6.628 21.998 Atomic orbital electron populations 1.21553 0.92870 1.01646 1.03556 1.21613 0.98635 0.93252 1.04286 1.20525 0.80041 0.92107 0.75796 1.90748 1.54153 1.46759 1.49361 1.48532 1.05368 1.07759 1.74240 1.22097 0.86216 0.91392 1.02485 1.22665 0.96955 0.93010 1.03065 1.22111 0.92622 0.93226 1.03564 0.85615 1.23367 0.81714 0.85539 0.78532 1.90759 1.76853 1.36167 1.32211 1.84495 1.21852 1.44717 1.69631 1.18218 0.92026 0.85746 0.96125 1.20559 1.01604 0.99842 1.00138 1.20499 0.98038 0.91588 0.98337 1.20333 1.01985 0.98529 0.99591 1.18854 0.92832 0.84876 0.91742 1.83607 1.48568 1.27237 1.51906 1.20750 1.03040 1.05156 1.17791 0.87781 1.24489 0.97206 0.97986 0.94195 1.69649 1.29806 1.28397 1.23259 0.86156 0.81905 0.80910 0.77804 1.19708 1.20675 1.18260 1.21315 1.05645 0.91935 1.05249 1.22072 0.90175 0.85144 1.02822 0.91905 0.91972 0.91858 0.88932 0.88860 0.90514 0.90599 0.89592 0.88076 0.86552 0.85772 0.85816 0.90870 0.84434 0.89032 0.89497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.20 37.15 0.34 -0.67 16 2 C -0.14 -0.92 5.61 -27.89 -0.16 -1.08 16 3 C 0.53 5.87 7.85 -10.99 -0.09 5.78 16 4 O -0.53 -8.42 16.24 5.56 0.09 -8.33 16 5 N -0.62 -6.20 3.33 -170.53 -0.57 -6.76 16 6 C 0.10 0.60 6.49 -3.06 -0.02 0.58 16 7 C -0.12 -0.84 6.41 -24.90 -0.16 -1.00 16 8 C -0.10 -1.03 3.54 -89.64 -0.32 -1.35 16 9 H 0.13 1.19 8.14 -51.93 -0.42 0.76 16 10 C 0.47 7.32 7.11 36.01 0.26 7.57 16 11 O -0.48 -9.30 15.32 -18.76 -0.29 -9.59 16 12 O -0.29 -4.89 10.03 -23.60 -0.24 -5.12 16 13 C 0.12 2.32 5.10 -39.24 -0.20 2.12 16 14 C -0.20 -3.44 9.99 -39.38 -0.39 -3.84 16 15 C -0.07 -1.09 10.03 -39.63 -0.40 -1.49 16 16 C -0.19 -3.58 9.99 -39.37 -0.39 -3.98 16 17 C 0.17 3.96 6.64 -39.13 -0.26 3.70 16 18 O -0.21 -5.51 8.59 0.03 0.00 -5.51 16 19 C -0.39 -11.16 9.90 30.88 0.31 -10.86 16 20 H 0.10 3.08 5.53 -52.48 -0.29 2.79 16 21 C 0.07 1.84 5.49 -17.52 -0.10 1.74 16 22 N -0.87 -25.38 13.96 55.48 0.77 -24.60 16 23 Si 0.91 21.57 28.62 -169.99 -4.86 16.71 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.26 -6.11 7.11 56.52 0.40 -5.71 16 27 C -0.22 -5.00 8.74 -39.25 -0.34 -5.35 16 28 C 0.12 1.47 6.03 -2.54 -0.02 1.45 16 29 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 30 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 31 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 32 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 0.62 8.03 -51.93 -0.42 0.21 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 39 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 40 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 41 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.14 3.33 5.71 -52.48 -0.30 3.03 16 43 H 0.09 1.27 8.04 -51.93 -0.42 0.85 16 44 H 0.09 1.18 7.40 -51.93 -0.38 0.80 16 LS Contribution 375.90 15.07 5.66 5.66 Total: -1.00 -34.76 375.90 -7.37 -42.14 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -6.01 Total: 2.05 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -1.93 Total: -6.64 kcal Atomic # 7 Polarization: -31.57 SS G_CDS: 0.21 Total: -31.37 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.43 Total: -28.55 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.86 Total: 16.71 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.76 -7.37 -42.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525862772.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.565 kcal (2) G-P(sol) polarization free energy of solvation -34.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds