Wall clock time and date at job start Tue Mar 31 2020 17:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50696 * 109.47132 * 2 1 4 4 O 1.21283 * 120.00063 * 359.97438 * 3 2 1 5 5 N 1.34780 * 120.00166 * 180.02562 * 3 2 1 6 6 C 1.47024 * 125.64738 * 0.03430 * 5 3 2 7 7 C 1.54327 * 107.27030 * 181.02795 * 6 5 3 8 8 C 1.55153 * 102.93975 * 22.19459 * 7 6 5 9 9 H 1.09000 * 111.03620 * 82.59402 * 8 7 6 10 10 C 1.50703 * 111.00015 * 206.41961 * 8 7 6 11 11 O 1.20836 * 119.99579 * 112.19664 * 10 8 7 12 12 O 1.34263 * 120.00433 * 292.20203 * 10 8 7 13 13 C 1.35920 * 116.99883 * 185.08093 * 12 10 8 14 14 C 1.38829 * 120.01915 * 255.14109 * 13 12 10 15 15 C 1.38184 * 120.07951 * 180.02562 * 14 13 12 16 16 C 1.38157 * 120.12820 * 0.02562 * 15 14 13 17 17 C 1.38889 * 120.03673 * 359.97438 * 16 15 14 18 18 O 1.35759 * 120.03893 * 179.97438 * 17 16 15 19 19 C 1.34829 * 117.00110 * 174.28387 * 18 17 16 20 20 H 1.08008 * 119.99574 * 354.56352 * 19 18 17 21 21 C 1.38651 * 120.00284 * 174.57244 * 19 18 17 22 22 N 1.31557 * 120.00031 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99828 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.46868 * 89.99654 * 23 21 19 25 25 H 1.48495 * 109.47147 * 210.00282 * 23 21 19 26 26 H 1.48502 * 109.46788 * 329.99989 * 23 21 19 27 27 C 1.38576 * 120.02530 * 75.16867 * 13 12 10 28 28 C 1.47429 * 125.64777 * 180.02562 * 5 3 2 29 29 H 1.09000 * 109.47153 * 60.00325 * 1 2 3 30 30 H 1.09007 * 109.47109 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47163 * 299.99911 * 1 2 3 32 32 H 1.09000 * 109.47584 * 239.99765 * 2 1 3 33 33 H 1.09000 * 109.47153 * 119.99674 * 2 1 3 34 34 H 1.08996 * 109.88681 * 300.44723 * 6 5 3 35 35 H 1.09000 * 109.88153 * 61.61001 * 6 5 3 36 36 H 1.09002 * 110.71609 * 263.83125 * 7 6 5 37 37 H 1.08996 * 110.71919 * 140.56047 * 7 6 5 38 38 H 1.07999 * 119.95767 * 0.29793 * 14 13 12 39 39 H 1.08010 * 119.93849 * 179.97438 * 15 14 13 40 40 H 1.08000 * 119.98119 * 180.02562 * 16 15 14 41 41 H 0.97001 * 119.99414 * 179.97438 * 22 21 19 42 42 H 1.08003 * 120.05815 * 359.94509 * 27 13 12 43 43 H 1.08996 * 110.37007 * 37.06850 * 28 5 3 44 44 H 1.08997 * 110.36233 * 274.74057 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.4181 0.6491 -0.0018 7 6 5.7690 1.3949 0.0244 8 6 5.3894 2.7806 0.6102 9 1 5.3417 2.7455 1.6986 10 6 6.3523 3.8441 0.1487 11 8 5.9774 4.7141 -0.6013 12 8 7.6267 3.8248 0.5709 13 6 8.4143 4.8699 0.2035 14 6 9.3643 4.7060 -0.7955 15 6 10.1660 5.7675 -1.1697 16 6 10.0253 6.9946 -0.5509 17 6 9.0766 7.1642 0.4492 18 8 8.9386 8.3699 1.0577 19 6 7.9226 8.5005 1.9343 20 1 7.2112 7.6976 2.0599 21 6 7.7909 9.6655 2.6745 22 7 6.7992 9.7931 3.5294 23 14 9.0216 11.0540 2.4576 24 1 8.5486 11.9726 1.3910 25 1 9.1532 11.8026 3.7333 26 1 10.3415 10.4904 2.0760 27 6 8.2700 6.0994 0.8261 28 6 3.9832 3.0020 -0.0001 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.3265 0.0170 0.8814 35 1 4.3476 0.0414 -0.9040 36 1 6.1715 1.4992 -0.9832 37 1 6.4794 0.8832 0.6736 38 1 9.4738 3.7490 -1.2839 39 1 10.9047 5.6373 -1.9469 40 1 10.6529 7.8227 -0.8455 41 1 6.7074 10.6081 4.0475 42 1 7.5311 6.2289 1.6032 43 1 3.4063 3.6912 0.6166 44 1 4.0672 3.3818 -1.0182 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525862772.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:57 Heat of formation + Delta-G solvation = -131.192278 kcal Electronic energy + Delta-G solvation = -27902.802877 eV Core-core repulsion = 23785.678947 eV Total energy + Delta-G solvation = -4117.123931 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.58486 -41.21856 -40.67218 -39.13825 -38.19079 -37.44075 -34.53832 -34.00189 -32.94905 -31.41488 -30.87762 -30.29445 -27.51823 -26.93101 -24.97157 -23.66330 -23.34802 -23.03612 -21.54271 -20.29893 -20.08115 -19.73811 -18.87589 -18.37713 -17.82802 -17.38388 -17.01299 -16.85705 -16.54541 -16.20455 -15.93532 -15.74242 -15.51923 -15.18022 -14.74031 -14.70999 -14.52958 -14.36715 -14.19621 -13.96271 -13.63492 -13.33082 -13.14984 -13.07517 -12.98600 -12.86252 -12.63888 -12.57740 -12.46581 -12.16010 -12.09858 -12.00119 -11.92842 -11.76234 -11.54117 -11.01446 -10.98566 -9.86959 -9.79889 -9.27599 -8.57974 -6.33534 0.04860 0.47563 0.89453 1.27927 1.33148 1.41528 1.49014 1.56857 2.02197 2.22873 2.64935 2.95107 2.97423 3.01952 3.29601 3.57794 3.70029 3.90628 3.96248 4.06511 4.14926 4.18186 4.20334 4.25233 4.26977 4.47104 4.48568 4.65895 4.67545 4.73052 4.76284 4.79370 4.89490 4.98558 5.02453 5.08951 5.14045 5.21917 5.31342 5.35860 5.36484 5.43138 5.60847 5.75772 6.02731 6.40843 6.61114 6.74467 7.06716 7.43150 8.54028 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014767 B = 0.002619 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.702864 B =10687.303353 C =12212.989439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 C 0.514 3.486 4 O -0.596 6.596 5 N -0.621 5.621 6 C 0.098 3.902 7 C -0.109 4.109 8 C -0.088 4.088 9 H 0.142 0.858 10 C 0.467 3.533 11 O -0.523 6.523 12 O -0.285 6.285 13 C 0.107 3.893 14 C -0.178 4.178 15 C -0.049 4.049 16 C -0.181 4.181 17 C 0.131 3.869 18 O -0.234 6.234 19 C -0.404 4.404 20 H 0.068 0.932 21 C 0.010 3.990 22 N -0.922 5.922 23 Si 0.978 3.022 24 H -0.265 1.265 25 H -0.265 1.265 26 H -0.256 1.256 27 C -0.248 4.248 28 C 0.119 3.881 29 H 0.042 0.958 30 H 0.091 0.909 31 H 0.042 0.958 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.132 0.868 38 H 0.162 0.838 39 H 0.182 0.818 40 H 0.146 0.854 41 H 0.287 0.713 42 H 0.100 0.900 43 H 0.059 0.941 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.235 -26.439 -8.706 27.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.166 4.166 3 C 0.306 3.694 4 O -0.477 6.477 5 N -0.355 5.355 6 C -0.023 4.023 7 C -0.147 4.147 8 C -0.107 4.107 9 H 0.159 0.841 10 C 0.311 3.689 11 O -0.409 6.409 12 O -0.200 6.200 13 C 0.066 3.934 14 C -0.197 4.197 15 C -0.067 4.067 16 C -0.200 4.200 17 C 0.081 3.919 18 O -0.141 6.141 19 C -0.481 4.481 20 H 0.086 0.914 21 C -0.189 4.189 22 N -0.562 5.562 23 Si 0.799 3.201 24 H -0.189 1.189 25 H -0.189 1.189 26 H -0.180 1.180 27 C -0.268 4.268 28 C -0.005 4.005 29 H 0.061 0.939 30 H 0.110 0.890 31 H 0.061 0.939 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.105 0.895 37 H 0.150 0.850 38 H 0.179 0.821 39 H 0.200 0.800 40 H 0.164 0.836 41 H 0.097 0.903 42 H 0.118 0.882 43 H 0.078 0.922 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.361 -25.404 -8.815 26.892 hybrid contribution -0.411 1.549 0.600 1.712 sum -0.772 -23.854 -8.215 25.241 Atomic orbital electron populations 1.21577 0.93764 1.02864 1.01614 1.21695 0.97750 0.90001 1.07105 1.21557 0.79809 0.93572 0.74458 1.90721 1.55796 1.48951 1.52243 1.48661 1.06055 1.07504 1.73297 1.22465 0.83750 0.90459 1.05580 1.22800 0.98431 0.89995 1.03434 1.22197 0.90176 0.94056 1.04313 0.84053 1.24367 0.81468 0.85738 0.77287 1.90744 1.77311 1.38252 1.34639 1.84513 1.22282 1.43447 1.69715 1.18453 0.93208 0.85153 0.96541 1.21200 0.98950 1.01924 0.97606 1.21180 0.97850 0.89592 0.98057 1.20802 1.00578 1.00756 0.97870 1.19504 0.94842 0.84333 0.93208 1.83536 1.48421 1.29137 1.53016 1.20588 1.03765 1.04797 1.18900 0.91427 1.25405 0.99259 1.00471 0.93771 1.69746 1.31930 1.29638 1.24923 0.85118 0.79083 0.77416 0.78470 1.18934 1.18930 1.18000 1.21264 1.05653 0.94086 1.05792 1.21828 0.91084 0.86529 1.01049 0.93914 0.88980 0.93914 0.85863 0.85743 0.87178 0.87691 0.89491 0.85017 0.82073 0.80033 0.83642 0.90335 0.88220 0.92222 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.20 71.98 0.66 -1.23 16 2 C -0.13 -1.33 5.61 29.85 0.17 -1.16 16 3 C 0.51 11.29 7.85 87.66 0.69 11.98 16 4 O -0.60 -20.11 16.24 -3.04 -0.05 -20.16 16 5 N -0.62 -11.67 3.33 -811.83 -2.70 -14.37 16 6 C 0.10 0.76 6.49 86.73 0.56 1.32 16 7 C -0.11 -1.14 6.41 31.78 0.20 -0.94 16 8 C -0.09 -1.85 3.54 -10.16 -0.04 -1.89 16 9 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 10 C 0.47 14.96 7.11 71.24 0.51 15.47 16 11 O -0.52 -21.63 15.32 21.93 0.34 -21.30 16 12 O -0.28 -9.40 10.03 4.59 0.05 -9.35 16 13 C 0.11 4.12 5.10 22.49 0.11 4.24 16 14 C -0.18 -5.35 9.99 22.40 0.22 -5.13 16 15 C -0.05 -1.38 10.03 22.24 0.22 -1.16 16 16 C -0.18 -6.65 9.99 22.41 0.22 -6.42 16 17 C 0.13 6.30 6.64 22.56 0.15 6.45 16 18 O -0.23 -13.00 8.59 -22.83 -0.20 -13.20 16 19 C -0.40 -24.88 9.90 67.92 0.67 -24.20 16 20 H 0.07 4.50 5.53 -2.91 -0.02 4.48 16 21 C 0.01 0.58 5.49 84.83 0.47 1.04 16 22 N -0.92 -56.90 13.96 21.61 0.30 -56.60 16 23 Si 0.98 45.99 28.62 68.60 1.96 47.95 16 24 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 25 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 26 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 27 C -0.25 -11.87 8.74 22.48 0.20 -11.67 16 28 C 0.12 3.07 6.03 86.85 0.52 3.60 16 29 H 0.04 0.73 8.10 -2.39 -0.02 0.71 16 30 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.04 0.74 8.10 -2.39 -0.02 0.72 16 32 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.09 0.94 8.03 -2.39 -0.02 0.92 16 37 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 39 H 0.18 3.17 8.06 -2.91 -0.02 3.14 16 40 H 0.15 4.66 8.06 -2.91 -0.02 4.64 16 41 H 0.29 16.11 8.31 -92.71 -0.77 15.34 16 42 H 0.10 5.44 5.71 -2.91 -0.02 5.43 16 43 H 0.06 1.88 8.04 -2.39 -0.02 1.86 16 44 H 0.07 1.95 7.40 -2.39 -0.02 1.93 16 Total: -1.00 -88.02 375.90 6.27 -81.75 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 1.02 Total: 14.99 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: 5.55 Total: -9.71 kcal Atomic # 7 Polarization: -68.57 SS G_CDS: -2.40 Total: -70.97 kcal Atomic # 8 Polarization: -64.15 SS G_CDS: 0.14 Total: -64.01 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.96 Total: 47.95 kcal Total: -88.02 6.27 -81.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525862772.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.438 kcal (2) G-P(sol) polarization free energy of solvation -88.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds