Wall clock time and date at job start Tue Mar 31 2020 17:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47186 * 2 1 4 4 O 1.21281 * 120.00183 * 0.02562 * 3 2 1 5 5 N 1.34781 * 120.00068 * 180.02562 * 3 2 1 6 6 C 1.47017 * 125.64580 * 0.02562 * 5 3 2 7 7 C 1.54324 * 107.27008 * 178.90866 * 6 5 3 8 8 C 1.55156 * 102.94266 * 337.81082 * 7 6 5 9 9 H 1.08999 * 111.00264 * 277.38998 * 8 7 6 10 10 C 1.50699 * 111.00568 * 153.57637 * 8 7 6 11 11 O 1.20829 * 119.99822 * 241.45497 * 10 8 7 12 12 O 1.34266 * 119.99975 * 61.45497 * 10 8 7 13 13 C 1.35922 * 117.00151 * 175.01528 * 12 10 8 14 14 C 1.38821 * 120.02038 * 255.28276 * 13 12 10 15 15 C 1.38189 * 120.08476 * 179.97438 * 14 13 12 16 16 C 1.38155 * 120.12165 * 0.02562 * 15 14 13 17 17 C 1.38899 * 120.03920 * 0.02562 * 16 15 14 18 18 O 1.35756 * 120.03689 * 179.97438 * 17 16 15 19 19 C 1.34831 * 116.99384 * 185.61688 * 18 17 16 20 20 H 1.07996 * 120.00377 * 354.96033 * 19 18 17 21 21 C 1.38658 * 119.99735 * 174.96174 * 19 18 17 22 22 N 1.31561 * 119.99688 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00230 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47180 * 59.99757 * 23 21 19 25 25 H 1.48497 * 109.47314 * 180.02562 * 23 21 19 26 26 H 1.48508 * 109.47045 * 300.00508 * 23 21 19 27 27 C 1.38572 * 120.02262 * 75.00240 * 13 12 10 28 28 C 1.47419 * 125.64682 * 179.72287 * 5 3 2 29 29 H 1.08996 * 109.46905 * 299.99638 * 1 2 3 30 30 H 1.08996 * 109.47306 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47091 * 59.99640 * 1 2 3 32 32 H 1.08995 * 109.47334 * 120.00817 * 2 1 3 33 33 H 1.09006 * 109.46900 * 240.00362 * 2 1 3 34 34 H 1.09000 * 109.89135 * 298.32690 * 6 5 3 35 35 H 1.09005 * 109.88269 * 59.49664 * 6 5 3 36 36 H 1.09003 * 110.72303 * 96.17411 * 7 6 5 37 37 H 1.09005 * 110.71990 * 219.27146 * 7 6 5 38 38 H 1.08004 * 119.95681 * 359.97438 * 14 13 12 39 39 H 1.07993 * 119.94270 * 180.02562 * 15 14 13 40 40 H 1.07999 * 119.98137 * 180.02562 * 16 15 14 41 41 H 0.97003 * 119.99781 * 179.97438 * 22 21 19 42 42 H 1.08003 * 120.05842 * 0.02562 * 27 13 12 43 43 H 1.08997 * 110.36769 * 322.99525 * 28 5 3 44 44 H 1.08999 * 110.36941 * 85.32625 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2443 2.3427 0.0005 5 7 3.3575 1.6671 -0.0005 6 6 4.4181 0.6491 -0.0017 7 6 5.7689 1.3948 -0.0300 8 6 5.3885 2.7809 -0.6142 9 1 5.3392 2.7460 -1.7025 10 6 6.3521 3.8441 -0.1538 11 8 5.9540 4.7767 0.5032 12 8 7.6531 3.7551 -0.4739 13 6 8.4490 4.7977 -0.1176 14 6 8.8808 5.7018 -1.0784 15 6 9.6895 6.7626 -0.7176 16 6 10.0714 6.9265 0.6000 17 6 9.6432 6.0243 1.5653 18 8 10.0189 6.1851 2.8599 19 6 9.6665 5.2125 3.7247 20 1 9.0415 4.3962 3.3940 21 6 10.1064 5.2605 5.0388 22 7 10.8681 6.2547 5.4415 23 14 9.6177 3.9136 6.2372 24 1 10.1137 2.6050 5.7403 25 1 10.2121 4.1958 7.5684 26 1 8.1380 3.8693 6.3556 27 6 8.8252 4.9621 1.2059 28 6 3.9832 3.0019 -0.0064 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 4.3494 0.0408 0.9003 35 1 4.3248 0.0175 -0.8852 36 1 6.1734 1.4985 0.9769 37 1 6.4792 0.8818 -0.6784 38 1 8.5842 5.5760 -2.1093 39 1 10.0238 7.4649 -1.4669 40 1 10.7032 7.7566 0.8795 41 1 11.1756 6.2885 6.3609 42 1 8.4868 4.2620 1.9555 43 1 3.4057 3.6889 -0.6248 44 1 4.0684 3.3854 1.0103 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525862776.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:02 Heat of formation + Delta-G solvation = -110.344855 kcal Electronic energy + Delta-G solvation = -28002.285406 eV Core-core repulsion = 23886.065487 eV Total energy + Delta-G solvation = -4116.219919 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.24689 -40.24177 -38.91591 -37.89203 -36.87600 -35.78463 -33.28626 -32.36413 -32.15050 -29.87409 -29.50876 -28.95624 -26.13422 -25.42545 -23.88286 -22.93357 -22.04526 -21.53992 -20.23212 -19.52136 -18.38294 -18.00675 -17.61136 -17.54058 -16.28366 -16.11192 -15.70095 -15.63741 -15.18571 -14.96703 -14.46907 -14.35059 -13.98775 -13.82446 -13.72775 -13.62123 -13.24546 -13.10015 -12.73206 -12.68273 -12.58611 -12.27908 -12.00755 -11.94797 -11.75199 -11.59128 -11.53212 -11.34550 -11.27824 -11.10475 -10.88652 -10.56060 -10.42546 -10.36049 -10.13798 -9.58379 -9.00868 -8.91278 -8.23047 -7.40581 -6.52107 -4.11714 1.66538 2.15670 2.16936 2.34349 2.49697 3.04399 3.08984 3.11849 3.13000 3.85427 3.90798 4.06123 4.34499 4.39659 4.51373 4.69361 4.72249 4.78434 4.84235 4.90546 5.00401 5.06930 5.17240 5.21196 5.38219 5.43293 5.50980 5.54418 5.58199 5.60689 5.68371 5.71831 5.83981 5.92786 5.94978 6.10530 6.22639 6.50257 6.81446 6.92654 7.03231 7.07910 7.14048 7.27592 7.52083 7.85564 7.90826 8.03904 8.92587 9.58493 10.65211 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011503 B = 0.002953 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.623038 B = 9479.649982 C =11249.490700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.527 3.473 4 O -0.537 6.537 5 N -0.623 5.623 6 C 0.100 3.900 7 C -0.122 4.122 8 C -0.094 4.094 9 H 0.125 0.875 10 C 0.464 3.536 11 O -0.476 6.476 12 O -0.292 6.292 13 C 0.118 3.882 14 C -0.211 4.211 15 C -0.065 4.065 16 C -0.185 4.185 17 C 0.163 3.837 18 O -0.169 6.169 19 C -0.394 4.394 20 H 0.090 0.910 21 C 0.042 3.958 22 N -0.859 5.859 23 Si 0.941 3.059 24 H -0.269 1.269 25 H -0.276 1.276 26 H -0.269 1.269 27 C -0.229 4.229 28 C 0.121 3.879 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.115 0.885 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.272 0.728 42 H 0.132 0.868 43 H 0.090 0.910 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.922 -14.728 -13.146 23.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.178 4.178 3 C 0.316 3.684 4 O -0.413 6.413 5 N -0.358 5.358 6 C -0.023 4.023 7 C -0.159 4.159 8 C -0.114 4.114 9 H 0.142 0.858 10 C 0.306 3.694 11 O -0.360 6.360 12 O -0.207 6.207 13 C 0.077 3.923 14 C -0.231 4.231 15 C -0.083 4.083 16 C -0.205 4.205 17 C 0.108 3.892 18 O -0.072 6.072 19 C -0.470 4.470 20 H 0.108 0.892 21 C -0.163 4.163 22 N -0.493 5.493 23 Si 0.765 3.235 24 H -0.194 1.194 25 H -0.201 1.201 26 H -0.194 1.194 27 C -0.248 4.248 28 C -0.001 4.001 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.120 0.880 38 H 0.133 0.867 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.082 0.918 42 H 0.149 0.851 43 H 0.108 0.892 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.317 -13.696 -12.542 22.285 hybrid contribution -0.040 -0.680 0.642 0.936 sum -12.356 -14.376 -11.900 22.382 Atomic orbital electron populations 1.21548 0.92878 1.01668 1.03491 1.21619 0.98614 0.93251 1.04363 1.20520 0.80020 0.92106 0.75714 1.90733 1.54198 1.46783 1.49588 1.48532 1.05392 1.07779 1.74131 1.22117 0.86208 0.91377 1.02556 1.22690 0.96841 0.92927 1.03492 1.22055 0.92628 0.93493 1.03200 0.85759 1.23380 0.82065 0.86287 0.77707 1.90769 1.77621 1.33167 1.34396 1.84497 1.19138 1.43098 1.73939 1.18213 0.93097 0.87999 0.92972 1.20497 1.07233 0.96895 0.98434 1.20493 0.96483 0.96273 0.95092 1.20348 1.06349 1.02089 0.91666 1.19126 0.91671 0.92275 0.86082 1.84002 1.67285 1.43693 1.12213 1.21258 1.32351 1.03259 0.90115 0.89250 1.25291 0.95926 0.98227 0.96843 1.70025 1.31562 1.29741 1.17966 0.85787 0.79103 0.79713 0.78923 1.19383 1.20084 1.19409 1.21183 1.05949 1.02571 0.95143 1.22009 0.90150 0.85127 1.02849 0.91884 0.91954 0.91941 0.88834 0.88872 0.90479 0.90539 0.89342 0.88012 0.86729 0.85933 0.85827 0.91796 0.85082 0.89211 0.89556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.20 37.16 0.34 -0.64 16 2 C -0.14 -0.92 5.61 -27.88 -0.16 -1.08 16 3 C 0.53 5.73 7.85 -10.98 -0.09 5.65 16 4 O -0.54 -8.15 16.24 5.56 0.09 -8.06 16 5 N -0.62 -6.10 3.33 -170.67 -0.57 -6.67 16 6 C 0.10 0.63 6.49 -3.07 -0.02 0.62 16 7 C -0.12 -0.94 6.40 -24.90 -0.16 -1.10 16 8 C -0.09 -0.96 3.53 -89.74 -0.32 -1.28 16 9 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 10 C 0.46 7.13 7.13 36.01 0.26 7.38 16 11 O -0.48 -9.23 15.22 -18.75 -0.29 -9.51 16 12 O -0.29 -4.85 10.02 -23.62 -0.24 -5.09 16 13 C 0.12 2.32 5.19 -39.24 -0.20 2.11 16 14 C -0.21 -3.76 9.98 -39.38 -0.39 -4.16 16 15 C -0.07 -1.14 10.03 -39.63 -0.40 -1.54 16 16 C -0.19 -3.86 9.99 -39.37 -0.39 -4.26 16 17 C 0.16 3.98 6.64 -39.13 -0.26 3.72 16 18 O -0.17 -4.82 9.76 0.03 0.00 -4.82 16 19 C -0.39 -11.05 9.49 30.89 0.29 -10.76 16 20 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 21 C 0.04 1.16 5.49 -17.51 -0.10 1.06 16 22 N -0.86 -25.00 13.67 55.48 0.76 -24.24 16 23 Si 0.94 20.46 29.55 -169.99 -5.02 15.44 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 26 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 27 C -0.23 -5.19 8.56 -39.25 -0.34 -5.52 16 28 C 0.12 1.41 5.98 -2.65 -0.02 1.40 16 29 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.09 0.79 8.03 -51.93 -0.42 0.38 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 39 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 41 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.13 3.05 5.64 -52.48 -0.30 2.75 16 43 H 0.09 1.11 8.04 -51.93 -0.42 0.69 16 44 H 0.09 1.19 7.50 -51.93 -0.39 0.80 16 LS Contribution 376.77 15.07 5.68 5.68 Total: -1.00 -35.22 376.77 -7.53 -42.75 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -6.00 Total: 2.92 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -1.94 Total: -8.39 kcal Atomic # 7 Polarization: -31.10 SS G_CDS: 0.19 Total: -30.91 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.43 Total: -27.48 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.22 -7.53 -42.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525862776.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.595 kcal (2) G-P(sol) polarization free energy of solvation -35.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds