Wall clock time and date at job start Tue Mar 31 2020 17:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47186 * 2 1 4 4 O 1.21281 * 120.00183 * 0.02562 * 3 2 1 5 5 N 1.34781 * 120.00068 * 180.02562 * 3 2 1 6 6 C 1.47017 * 125.64580 * 0.02562 * 5 3 2 7 7 C 1.54324 * 107.27008 * 178.90866 * 6 5 3 8 8 C 1.55156 * 102.94266 * 337.81082 * 7 6 5 9 9 H 1.08999 * 111.00264 * 277.38998 * 8 7 6 10 10 C 1.50699 * 111.00568 * 153.57637 * 8 7 6 11 11 O 1.20829 * 119.99822 * 241.45497 * 10 8 7 12 12 O 1.34266 * 119.99975 * 61.45497 * 10 8 7 13 13 C 1.35922 * 117.00151 * 175.01528 * 12 10 8 14 14 C 1.38821 * 120.02038 * 255.28276 * 13 12 10 15 15 C 1.38189 * 120.08476 * 179.97438 * 14 13 12 16 16 C 1.38155 * 120.12165 * 0.02562 * 15 14 13 17 17 C 1.38899 * 120.03920 * 0.02562 * 16 15 14 18 18 O 1.35756 * 120.03689 * 179.97438 * 17 16 15 19 19 C 1.34831 * 116.99384 * 185.61688 * 18 17 16 20 20 H 1.07996 * 120.00377 * 354.96033 * 19 18 17 21 21 C 1.38658 * 119.99735 * 174.96174 * 19 18 17 22 22 N 1.31561 * 119.99688 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00230 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47180 * 59.99757 * 23 21 19 25 25 H 1.48497 * 109.47314 * 180.02562 * 23 21 19 26 26 H 1.48508 * 109.47045 * 300.00508 * 23 21 19 27 27 C 1.38572 * 120.02262 * 75.00240 * 13 12 10 28 28 C 1.47419 * 125.64682 * 179.72287 * 5 3 2 29 29 H 1.08996 * 109.46905 * 299.99638 * 1 2 3 30 30 H 1.08996 * 109.47306 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47091 * 59.99640 * 1 2 3 32 32 H 1.08995 * 109.47334 * 120.00817 * 2 1 3 33 33 H 1.09006 * 109.46900 * 240.00362 * 2 1 3 34 34 H 1.09000 * 109.89135 * 298.32690 * 6 5 3 35 35 H 1.09005 * 109.88269 * 59.49664 * 6 5 3 36 36 H 1.09003 * 110.72303 * 96.17411 * 7 6 5 37 37 H 1.09005 * 110.71990 * 219.27146 * 7 6 5 38 38 H 1.08004 * 119.95681 * 359.97438 * 14 13 12 39 39 H 1.07993 * 119.94270 * 180.02562 * 15 14 13 40 40 H 1.07999 * 119.98137 * 180.02562 * 16 15 14 41 41 H 0.97003 * 119.99781 * 179.97438 * 22 21 19 42 42 H 1.08003 * 120.05842 * 0.02562 * 27 13 12 43 43 H 1.08997 * 110.36769 * 322.99525 * 28 5 3 44 44 H 1.08999 * 110.36941 * 85.32625 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2443 2.3427 0.0005 5 7 3.3575 1.6671 -0.0005 6 6 4.4181 0.6491 -0.0017 7 6 5.7689 1.3948 -0.0300 8 6 5.3885 2.7809 -0.6142 9 1 5.3392 2.7460 -1.7025 10 6 6.3521 3.8441 -0.1538 11 8 5.9540 4.7767 0.5032 12 8 7.6531 3.7551 -0.4739 13 6 8.4490 4.7977 -0.1176 14 6 8.8808 5.7018 -1.0784 15 6 9.6895 6.7626 -0.7176 16 6 10.0714 6.9265 0.6000 17 6 9.6432 6.0243 1.5653 18 8 10.0189 6.1851 2.8599 19 6 9.6665 5.2125 3.7247 20 1 9.0415 4.3962 3.3940 21 6 10.1064 5.2605 5.0388 22 7 10.8681 6.2547 5.4415 23 14 9.6177 3.9136 6.2372 24 1 10.1137 2.6050 5.7403 25 1 10.2121 4.1958 7.5684 26 1 8.1380 3.8693 6.3556 27 6 8.8252 4.9621 1.2059 28 6 3.9832 3.0019 -0.0064 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 4.3494 0.0408 0.9003 35 1 4.3248 0.0175 -0.8852 36 1 6.1734 1.4985 0.9769 37 1 6.4792 0.8818 -0.6784 38 1 8.5842 5.5760 -2.1093 39 1 10.0238 7.4649 -1.4669 40 1 10.7032 7.7566 0.8795 41 1 11.1756 6.2885 6.3609 42 1 8.4868 4.2620 1.9555 43 1 3.4057 3.6889 -0.6248 44 1 4.0684 3.3854 1.0103 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525862776.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:01 Heat of formation + Delta-G solvation = -132.960577 kcal Electronic energy + Delta-G solvation = -28003.266097 eV Core-core repulsion = 23886.065487 eV Total energy + Delta-G solvation = -4117.200610 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.55424 -41.18893 -40.56101 -39.07272 -38.16449 -37.38323 -34.36346 -33.99121 -32.94436 -31.38002 -30.66112 -30.29375 -27.56139 -26.92441 -24.92813 -23.62422 -23.53752 -22.96947 -21.48478 -20.28443 -20.14243 -19.50906 -18.83795 -18.34747 -17.84219 -17.31942 -16.89549 -16.81870 -16.51699 -16.10020 -16.04244 -15.70955 -15.53888 -15.09163 -14.76277 -14.67304 -14.50977 -14.37057 -13.96524 -13.73416 -13.61760 -13.19463 -13.14835 -13.11164 -12.96413 -12.79110 -12.62841 -12.56914 -12.44473 -12.21596 -12.10531 -11.94617 -11.93806 -11.74301 -11.46387 -11.00379 -10.87289 -9.84725 -9.78804 -9.18136 -8.54609 -6.24210 0.09636 0.52881 0.91993 1.29024 1.38291 1.45204 1.45728 1.56818 2.03547 2.11664 2.70970 3.02246 3.04584 3.28399 3.38030 3.62383 3.70567 3.92744 3.98057 4.06120 4.16257 4.17964 4.20360 4.27041 4.29533 4.49175 4.51498 4.66571 4.69431 4.75193 4.77182 4.89879 4.92145 4.99128 4.99283 5.01785 5.08397 5.14415 5.32192 5.36179 5.40167 5.47797 5.52046 5.91838 5.96310 6.40672 6.64613 6.88805 7.06696 7.64249 8.67529 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011503 B = 0.002953 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.623038 B = 9479.649982 C =11249.490700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 C 0.517 3.483 4 O -0.593 6.593 5 N -0.621 5.621 6 C 0.100 3.900 7 C -0.119 4.119 8 C -0.080 4.080 9 H 0.162 0.838 10 C 0.465 3.535 11 O -0.524 6.524 12 O -0.282 6.282 13 C 0.112 3.888 14 C -0.190 4.190 15 C -0.049 4.049 16 C -0.195 4.195 17 C 0.125 3.875 18 O -0.221 6.221 19 C -0.419 4.419 20 H 0.092 0.908 21 C -0.017 4.017 22 N -0.913 5.913 23 Si 1.014 2.986 24 H -0.252 1.252 25 H -0.265 1.265 26 H -0.264 1.264 27 C -0.246 4.246 28 C 0.119 3.881 29 H 0.040 0.960 30 H 0.089 0.911 31 H 0.046 0.954 32 H 0.117 0.883 33 H 0.127 0.873 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.069 0.931 37 H 0.133 0.867 38 H 0.160 0.840 39 H 0.175 0.825 40 H 0.129 0.871 41 H 0.276 0.724 42 H 0.111 0.889 43 H 0.075 0.925 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.418 -18.025 -16.311 27.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.309 3.691 4 O -0.474 6.474 5 N -0.355 5.355 6 C -0.021 4.021 7 C -0.156 4.156 8 C -0.099 4.099 9 H 0.179 0.821 10 C 0.309 3.691 11 O -0.410 6.410 12 O -0.197 6.197 13 C 0.071 3.929 14 C -0.208 4.208 15 C -0.067 4.067 16 C -0.214 4.214 17 C 0.074 3.926 18 O -0.127 6.127 19 C -0.495 4.495 20 H 0.110 0.890 21 C -0.215 4.215 22 N -0.551 5.551 23 Si 0.833 3.167 24 H -0.176 1.176 25 H -0.189 1.189 26 H -0.188 1.188 27 C -0.266 4.266 28 C -0.005 4.005 29 H 0.059 0.941 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.135 0.865 33 H 0.145 0.855 34 H 0.113 0.887 35 H 0.135 0.865 36 H 0.087 0.913 37 H 0.151 0.849 38 H 0.177 0.823 39 H 0.193 0.807 40 H 0.147 0.853 41 H 0.085 0.915 42 H 0.129 0.871 43 H 0.094 0.906 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.797 -17.039 -15.775 26.513 hybrid contribution 0.034 0.399 1.285 1.346 sum -12.763 -16.640 -14.490 25.490 Atomic orbital electron populations 1.21567 0.93639 1.02813 1.01708 1.21700 0.97858 0.90286 1.06959 1.21457 0.79771 0.93458 0.74447 1.90708 1.55669 1.48793 1.52230 1.48651 1.05972 1.07616 1.73288 1.22415 0.83764 0.90548 1.05402 1.22803 0.98508 0.91370 1.02951 1.22160 0.89791 0.92972 1.04990 0.82079 1.24446 0.81700 0.86614 0.76301 1.90766 1.78072 1.35523 1.36660 1.84520 1.19615 1.42049 1.73522 1.18396 0.93410 0.89002 0.92140 1.21120 1.04665 0.95060 0.99986 1.21085 0.94587 0.96623 0.94373 1.20721 1.06452 1.01554 0.92650 1.19732 0.93056 0.94126 0.85722 1.83961 1.69829 1.44931 1.14014 1.21661 1.33046 1.03766 0.90979 0.89024 1.26557 0.95655 1.00912 0.98394 1.70156 1.33908 1.32342 1.18662 0.84723 0.78892 0.76756 0.76334 1.17609 1.18908 1.18833 1.21177 1.06533 1.02328 0.96529 1.21804 0.91334 0.86469 1.00845 0.94082 0.89190 0.93456 0.86504 0.85526 0.88727 0.86540 0.91252 0.84863 0.82274 0.80725 0.85269 0.91528 0.87075 0.90648 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.20 71.98 0.66 -1.09 16 2 C -0.13 -1.29 5.61 29.85 0.17 -1.12 16 3 C 0.52 10.61 7.85 87.66 0.69 11.30 16 4 O -0.59 -18.56 16.24 -3.03 -0.05 -18.61 16 5 N -0.62 -10.99 3.33 -812.25 -2.70 -13.69 16 6 C 0.10 0.84 6.49 86.73 0.56 1.40 16 7 C -0.12 -1.43 6.40 31.78 0.20 -1.23 16 8 C -0.08 -1.46 3.53 -10.23 -0.04 -1.49 16 9 H 0.16 1.85 8.14 -2.39 -0.02 1.83 16 10 C 0.47 13.94 7.13 71.24 0.51 14.45 16 11 O -0.52 -20.95 15.22 21.95 0.33 -20.62 16 12 O -0.28 -8.89 10.02 4.54 0.05 -8.85 16 13 C 0.11 4.27 5.19 22.49 0.12 4.39 16 14 C -0.19 -6.06 9.98 22.40 0.22 -5.84 16 15 C -0.05 -1.56 10.03 22.24 0.22 -1.34 16 16 C -0.19 -8.12 9.99 22.41 0.22 -7.89 16 17 C 0.12 6.38 6.64 22.56 0.15 6.53 16 18 O -0.22 -13.55 9.76 -22.82 -0.22 -13.77 16 19 C -0.42 -25.09 9.49 67.92 0.64 -24.45 16 20 H 0.09 5.19 5.20 -2.91 -0.02 5.17 16 21 C -0.02 -0.96 5.49 84.83 0.47 -0.49 16 22 N -0.91 -56.22 13.67 21.61 0.30 -55.93 16 23 Si 1.01 43.44 29.55 68.60 2.03 45.46 16 24 H -0.25 -9.97 7.11 99.48 0.71 -9.27 16 25 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 26 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 27 C -0.25 -11.58 8.56 22.48 0.19 -11.39 16 28 C 0.12 2.78 5.98 86.78 0.52 3.30 16 29 H 0.04 0.68 8.10 -2.39 -0.02 0.66 16 30 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.73 8.10 -2.39 -0.02 0.71 16 32 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.13 0.48 8.14 -2.38 -0.02 0.46 16 34 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.12 0.18 8.14 -2.38 -0.02 0.16 16 36 H 0.07 1.13 8.03 -2.39 -0.02 1.11 16 37 H 0.13 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.16 3.76 8.06 -2.91 -0.02 3.74 16 39 H 0.18 3.80 8.06 -2.91 -0.02 3.78 16 40 H 0.13 5.13 8.06 -2.91 -0.02 5.11 16 41 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 42 H 0.11 5.54 5.64 -2.91 -0.02 5.53 16 43 H 0.08 1.94 8.04 -2.39 -0.02 1.92 16 44 H 0.05 1.58 7.50 -2.39 -0.02 1.56 16 Total: -1.00 -87.62 376.77 6.26 -81.36 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 1.02 Total: 19.61 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 5.51 Total: -14.97 kcal Atomic # 7 Polarization: -67.21 SS G_CDS: -2.41 Total: -69.62 kcal Atomic # 8 Polarization: -61.96 SS G_CDS: 0.11 Total: -61.85 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -87.62 6.26 -81.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525862776.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.597 kcal (2) G-P(sol) polarization free energy of solvation -87.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds