Wall clock time and date at job start Tue Mar 31 2020 18:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34792 * 116.99523 * 2 1 4 4 O 1.21539 * 120.00633 * 359.97438 * 3 2 1 5 5 C 1.46951 * 119.99587 * 179.97438 * 3 2 1 6 6 C 1.33085 * 119.99985 * 179.97438 * 5 3 2 7 7 C 1.50699 * 120.00115 * 180.02562 * 6 5 3 8 8 H 1.08999 * 109.47092 * 4.99881 * 7 6 5 9 9 C 1.52999 * 109.47407 * 125.00111 * 7 6 5 10 10 N 1.46501 * 109.47065 * 245.00239 * 7 6 5 11 11 C 1.34774 * 120.00153 * 154.99917 * 10 7 6 12 12 O 1.21277 * 119.99942 * 359.97438 * 11 10 7 13 13 C 1.50703 * 120.00190 * 179.97438 * 11 10 7 14 14 C 1.50700 * 109.47188 * 180.02562 * 13 11 10 15 15 C 1.38321 * 119.96332 * 269.71872 * 14 13 11 16 16 C 1.38278 * 120.13871 * 179.76349 * 15 14 13 17 17 C 1.38116 * 120.06937 * 0.52065 * 16 15 14 18 18 C 1.38852 * 119.92855 * 359.73490 * 17 16 15 19 19 O 1.35757 * 120.06820 * 179.97438 * 18 17 16 20 20 C 1.34828 * 116.99991 * 354.49558 * 19 18 17 21 21 H 1.07994 * 120.00352 * 5.05720 * 20 19 18 22 22 C 1.38657 * 119.99514 * 185.05542 * 20 19 18 23 23 N 1.31551 * 120.00262 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99492 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47054 * 90.00034 * 24 22 20 26 26 H 1.48500 * 109.46698 * 209.99921 * 24 22 20 27 27 H 1.48500 * 109.46960 * 329.99714 * 24 22 20 28 28 C 1.38074 * 119.96822 * 89.99947 * 14 13 11 29 29 H 1.09000 * 109.46709 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47264 * 300.00130 * 1 2 3 31 31 H 1.08995 * 109.46965 * 60.00190 * 1 2 3 32 32 H 1.07997 * 120.00319 * 359.97438 * 5 3 2 33 33 H 1.07998 * 120.00432 * 359.97438 * 6 5 3 34 34 H 1.08999 * 109.47182 * 59.99825 * 9 7 6 35 35 H 1.08996 * 109.47215 * 180.02562 * 9 7 6 36 36 H 1.08998 * 109.46870 * 300.00128 * 9 7 6 37 37 H 0.97003 * 119.99828 * 334.99649 * 10 7 6 38 38 H 1.09005 * 109.46899 * 299.99876 * 13 11 10 39 39 H 1.09001 * 109.47327 * 59.99990 * 13 11 10 40 40 H 1.07999 * 119.93328 * 0.02562 * 15 14 13 41 41 H 1.08007 * 119.96554 * 180.25934 * 16 15 14 42 42 H 1.07997 * 120.03944 * 179.72128 * 17 16 15 43 43 H 0.97006 * 119.99660 * 180.02562 * 23 22 20 44 44 H 1.08001 * 120.03533 * 359.95350 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0639 1.2011 0.0000 4 8 1.4020 2.2204 -0.0005 5 6 3.5314 1.2780 0.0006 6 6 4.1356 2.4638 0.0001 7 6 5.6405 2.5427 0.0001 8 1 6.0570 1.5393 -0.0890 9 6 6.1066 3.3951 -1.1819 10 7 6.0976 3.1517 1.2516 11 6 7.3350 2.8888 1.7165 12 8 8.0700 2.1476 1.0990 13 6 7.8054 3.5157 3.0037 14 6 9.2127 3.0639 3.2977 15 6 9.4291 1.9235 4.0501 16 6 10.7189 1.5029 4.3179 17 6 11.7954 2.2267 3.8435 18 6 11.5814 3.3747 3.0924 19 8 12.6374 4.0886 2.6252 20 6 13.8650 3.6951 3.0202 21 1 13.9805 2.7991 3.6120 22 6 14.9791 4.4409 2.6666 23 7 14.8385 5.5320 1.9453 24 14 16.6801 3.8953 3.2132 25 1 17.2648 2.9952 2.1871 26 1 17.5514 5.0860 3.3817 27 1 16.5761 3.1712 4.5056 28 6 10.2846 3.7917 2.8206 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 4.1197 0.3723 0.0014 33 1 3.5475 3.3696 -0.0012 34 1 5.6902 4.3985 -1.0928 35 1 7.1951 3.4518 -1.1821 36 1 5.7665 2.9420 -2.1131 37 1 5.5096 3.7442 1.7457 38 1 7.7853 4.6013 2.9076 39 1 7.1479 3.2108 3.8179 40 1 8.5891 1.3582 4.4256 41 1 10.8847 0.6098 4.9021 42 1 12.8025 1.9002 4.0568 43 1 15.6180 6.0535 1.6976 44 1 10.1150 4.6841 2.2364 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001529289130.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:10 Heat of formation + Delta-G solvation = -108.903472 kcal Electronic energy + Delta-G solvation = -26697.457329 eV Core-core repulsion = 22581.299913 eV Total energy + Delta-G solvation = -4116.157416 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.76664 -39.98967 -38.83337 -37.24143 -36.65075 -36.06897 -33.24761 -32.36002 -31.97924 -30.39474 -29.11947 -28.27931 -27.01478 -25.24287 -24.82014 -22.34396 -21.57939 -21.01400 -20.56311 -19.84790 -18.33785 -17.61260 -17.28367 -17.02961 -16.80002 -16.74593 -15.99421 -15.41618 -14.93432 -14.53827 -14.35337 -14.33411 -14.21104 -13.81526 -13.74299 -13.48163 -13.41221 -12.99856 -12.85103 -12.57896 -12.43135 -12.40037 -12.21057 -11.82410 -11.53794 -11.41383 -11.25491 -11.23628 -11.03350 -10.79439 -10.75156 -10.57963 -10.41403 -10.33287 -9.71964 -9.29301 -9.27737 -8.79283 -8.02214 -7.17066 -6.39759 -3.98689 0.52718 2.11884 2.27290 2.43066 2.46425 2.72818 3.15408 3.16670 3.21508 3.24940 4.00759 4.11017 4.46925 4.55713 4.61926 4.67353 4.73939 4.85314 4.89603 5.01784 5.07492 5.13268 5.15386 5.27007 5.41233 5.52253 5.54234 5.64773 5.69889 5.79020 5.82343 5.90284 5.97670 6.01330 6.22265 6.28747 6.38430 6.70354 6.96412 7.12033 7.28198 7.30918 7.37430 7.42020 7.48989 7.87632 8.05378 8.26055 9.06111 9.77216 10.78509 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.027331 B = 0.001801 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.236917 B =15543.666467 C =16060.801691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.496 3.504 4 O -0.511 6.511 5 C -0.177 4.177 6 C -0.058 4.058 7 C 0.165 3.835 8 H 0.100 0.900 9 C -0.163 4.163 10 N -0.734 5.734 11 C 0.517 3.483 12 O -0.514 6.514 13 C -0.093 4.093 14 C -0.034 4.034 15 C -0.196 4.196 16 C -0.075 4.075 17 C -0.230 4.230 18 C 0.154 3.846 19 O -0.180 6.180 20 C -0.391 4.391 21 H 0.091 0.909 22 C 0.039 3.961 23 N -0.864 5.864 24 Si 0.940 3.060 25 H -0.274 1.274 26 H -0.278 1.278 27 H -0.268 1.268 28 C -0.174 4.174 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.144 0.856 33 H 0.135 0.865 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.401 0.599 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.126 0.874 43 H 0.269 0.731 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.272 -7.230 -1.836 26.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.271 6.271 3 C 0.342 3.658 4 O -0.401 6.401 5 C -0.197 4.197 6 C -0.077 4.077 7 C 0.061 3.939 8 H 0.118 0.882 9 C -0.222 4.222 10 N -0.388 5.388 11 C 0.304 3.696 12 O -0.388 6.388 13 C -0.133 4.133 14 C -0.034 4.034 15 C -0.215 4.215 16 C -0.093 4.093 17 C -0.250 4.250 18 C 0.101 3.899 19 O -0.084 6.084 20 C -0.467 4.467 21 H 0.109 0.891 22 C -0.165 4.165 23 N -0.500 5.500 24 Si 0.765 3.235 25 H -0.199 1.199 26 H -0.203 1.203 27 H -0.192 1.192 28 C -0.193 4.193 29 H 0.121 0.879 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.162 0.838 33 H 0.153 0.847 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.235 0.765 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.144 0.856 43 H 0.079 0.921 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -24.759 -7.120 -2.542 25.887 hybrid contribution 0.279 -0.031 0.458 0.537 sum -24.480 -7.151 -2.083 25.588 Atomic orbital electron populations 1.23300 0.75909 1.03902 1.02673 1.86607 1.23697 1.32664 1.84129 1.21566 0.90107 0.81416 0.72715 1.90868 1.67258 1.36040 1.45960 1.22029 0.89970 1.00260 1.07408 1.24030 0.96225 0.98239 0.89212 1.20018 0.88801 0.99673 0.85434 0.88183 1.22178 1.03250 0.99892 0.96855 1.46089 1.16534 1.51287 1.24939 1.20811 0.80629 0.81235 0.86928 1.90767 1.53665 1.35582 1.58756 1.20592 0.95815 1.01900 0.94980 1.18646 0.91723 0.95385 0.97696 1.20346 0.96247 0.98821 1.06133 1.20679 0.92429 0.98049 0.98164 1.21174 0.99516 0.98387 1.05899 1.19281 0.88675 0.90542 0.91409 1.83977 1.12833 1.50125 1.61438 1.21314 0.80329 1.10358 1.34698 0.89134 1.25269 0.99329 0.95339 0.96594 1.70042 1.30849 1.14443 1.34623 0.85723 0.80442 0.78231 0.79087 1.19930 1.20309 1.19232 1.19940 0.89778 1.02632 1.06972 0.87883 0.91754 0.91766 0.83791 0.84698 0.91917 0.90694 0.91368 0.76517 0.88123 0.88303 0.87948 0.87494 0.85634 0.92126 0.86839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.57 101.05 1.07 1.26 16 2 O -0.35 -2.97 10.58 -40.74 -0.43 -3.40 16 3 C 0.50 4.57 7.91 34.26 0.27 4.84 16 4 O -0.51 -5.87 16.01 -19.29 -0.31 -6.18 16 5 C -0.18 -1.32 9.76 -37.85 -0.37 -1.69 16 6 C -0.06 -0.41 8.54 -36.10 -0.31 -0.72 16 7 C 0.17 1.43 2.94 -69.08 -0.20 1.23 16 8 H 0.10 1.01 7.25 -51.93 -0.38 0.63 16 9 C -0.16 -1.43 9.47 37.16 0.35 -1.08 16 10 N -0.73 -6.74 5.07 -54.93 -0.28 -7.02 16 11 C 0.52 6.94 7.79 -10.99 -0.09 6.85 16 12 O -0.51 -9.41 15.70 5.56 0.09 -9.32 16 13 C -0.09 -1.18 5.83 -29.03 -0.17 -1.35 16 14 C -0.03 -0.61 4.37 -104.65 -0.46 -1.07 16 15 C -0.20 -3.52 9.70 -39.54 -0.38 -3.90 16 16 C -0.07 -1.44 10.04 -39.61 -0.40 -1.84 16 17 C -0.23 -5.21 9.17 -39.40 -0.36 -5.57 16 18 C 0.15 3.86 6.65 -39.11 -0.26 3.60 16 19 O -0.18 -5.27 9.76 0.03 0.00 -5.27 16 20 C -0.39 -11.15 9.49 30.89 0.29 -10.86 16 21 H 0.09 2.40 5.20 -52.49 -0.27 2.12 16 22 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 23 N -0.86 -25.69 13.67 55.48 0.76 -24.94 16 24 Si 0.94 20.85 29.55 -169.99 -5.02 15.83 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 27 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 28 C -0.17 -3.78 9.65 -39.40 -0.38 -4.16 16 29 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.14 0.91 7.87 -52.49 -0.41 0.49 16 33 H 0.14 0.91 7.49 -52.49 -0.39 0.52 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.40 2.48 8.59 -40.82 -0.35 2.13 16 38 H 0.10 1.08 8.08 -51.93 -0.42 0.66 16 39 H 0.10 0.95 8.08 -51.93 -0.42 0.53 16 40 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 41 H 0.11 1.73 8.06 -52.48 -0.42 1.30 16 42 H 0.13 2.82 5.64 -52.49 -0.30 2.53 16 43 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.11 2.39 8.06 -52.49 -0.42 1.97 16 LS Contribution 388.54 15.07 5.86 5.86 Total: -1.00 -36.37 388.54 -6.71 -43.08 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -5.88 Total: 4.82 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -1.49 Total: -13.46 kcal Atomic # 7 Polarization: -32.43 SS G_CDS: 0.48 Total: -31.95 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.65 Total: -24.17 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.37 -6.71 -43.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001529289130.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.827 kcal (2) G-P(sol) polarization free energy of solvation -36.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds