Wall clock time and date at job start Tue Mar 31 2020 18:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34810 * 117.00019 * 2 1 4 4 O 1.21533 * 119.99886 * 359.97438 * 3 2 1 5 5 C 1.46951 * 120.00012 * 180.02562 * 3 2 1 6 6 C 1.33074 * 119.99909 * 179.97438 * 5 3 2 7 7 C 1.50701 * 120.00024 * 180.02562 * 6 5 3 8 8 H 1.08998 * 109.47100 * 359.97438 * 7 6 5 9 9 C 1.53009 * 109.46971 * 240.00393 * 7 6 5 10 10 N 1.46497 * 109.47428 * 120.00432 * 7 6 5 11 11 C 1.34779 * 120.00029 * 205.00175 * 10 7 6 12 12 O 1.21280 * 119.99730 * 359.97438 * 11 10 7 13 13 C 1.50697 * 119.99832 * 179.97438 * 11 10 7 14 14 C 1.50703 * 109.47029 * 180.02562 * 13 11 10 15 15 C 1.38326 * 119.96036 * 269.72148 * 14 13 11 16 16 C 1.38280 * 120.13593 * 180.27023 * 15 14 13 17 17 C 1.38125 * 120.06813 * 0.02562 * 16 15 14 18 18 C 1.38857 * 119.92941 * 359.97438 * 17 16 15 19 19 O 1.35759 * 120.06714 * 179.97438 * 18 17 16 20 20 C 1.34831 * 116.99718 * 354.48542 * 19 18 17 21 21 H 1.07998 * 120.00057 * 5.06548 * 20 19 18 22 22 C 1.38654 * 119.99581 * 185.05723 * 20 19 18 23 23 N 1.31558 * 119.99951 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00181 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.47207 * 89.99972 * 24 22 20 26 26 H 1.48498 * 109.46980 * 209.99927 * 24 22 20 27 27 H 1.48496 * 109.46974 * 329.99687 * 24 22 20 28 28 C 1.38074 * 119.96544 * 90.00097 * 14 13 11 29 29 H 1.08996 * 109.47312 * 59.99899 * 1 2 3 30 30 H 1.08993 * 109.47307 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46851 * 300.00002 * 1 2 3 32 32 H 1.08007 * 119.99872 * 0.02562 * 5 3 2 33 33 H 1.08007 * 120.00219 * 0.02562 * 6 5 3 34 34 H 1.08992 * 109.47211 * 60.00186 * 9 7 6 35 35 H 1.09003 * 109.46441 * 180.02562 * 9 7 6 36 36 H 1.08998 * 109.46620 * 299.99573 * 9 7 6 37 37 H 0.97001 * 119.99807 * 24.99616 * 10 7 6 38 38 H 1.08996 * 109.47426 * 60.00133 * 13 11 10 39 39 H 1.08994 * 109.47220 * 299.99909 * 13 11 10 40 40 H 1.07995 * 119.93590 * 0.26096 * 15 14 13 41 41 H 1.07998 * 119.96668 * 180.02562 * 16 15 14 42 42 H 1.08000 * 120.03457 * 179.97438 * 17 16 15 43 43 H 0.96999 * 120.00512 * 179.97438 * 23 22 20 44 44 H 1.08000 * 120.03806 * 359.69747 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0640 1.2012 0.0000 4 8 1.4020 2.2204 -0.0005 5 6 3.5315 1.2781 -0.0006 6 6 4.1356 2.4638 -0.0011 7 6 5.6405 2.5427 -0.0023 8 1 6.0572 1.5355 -0.0021 9 6 6.1130 3.2896 1.2467 10 7 6.0912 3.2579 -1.1987 11 6 7.3261 3.0364 -1.6911 12 8 8.0644 2.2453 -1.1434 13 6 7.7894 3.7718 -2.9222 14 6 9.1946 3.3465 -3.2623 15 6 10.2717 4.0353 -2.7341 16 6 11.5626 3.6517 -3.0482 17 6 11.7802 2.5793 -3.8911 18 6 10.7010 1.8860 -4.4229 19 8 10.9116 0.8319 -5.2521 20 6 12.1869 0.5803 -5.6104 21 1 12.9929 1.1532 -5.1761 22 6 12.4634 -0.4139 -6.5365 23 7 13.7077 -0.6597 -6.8858 24 14 11.0693 -1.4043 -7.2880 25 1 10.5938 -0.7312 -8.5233 26 1 11.5547 -2.7673 -7.6225 27 1 9.9512 -1.5018 -6.3157 28 6 9.4055 2.2735 -4.1052 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.1197 0.3722 -0.0014 33 1 3.5474 3.3696 -0.0007 34 1 5.7778 2.7575 2.1369 35 1 7.2016 3.3471 1.2456 36 1 5.6964 4.2969 1.2470 37 1 5.5007 3.8909 -1.6365 38 1 7.7699 4.8450 -2.7333 39 1 7.1275 3.5376 -3.7559 40 1 10.1042 4.8744 -2.0753 41 1 12.4015 4.1911 -2.6339 42 1 12.7886 2.2804 -4.1363 43 1 13.9013 -1.3555 -7.5334 44 1 8.5642 1.7359 -4.5170 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001529289131.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:14 Heat of formation + Delta-G solvation = -107.112863 kcal Electronic energy + Delta-G solvation = -26810.466816 eV Core-core repulsion = 22694.387047 eV Total energy + Delta-G solvation = -4116.079769 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.77091 -40.06741 -38.99730 -37.28660 -36.76204 -36.16098 -33.30504 -32.41041 -32.12850 -30.44523 -29.38033 -28.28161 -27.10444 -25.18861 -24.85812 -22.40018 -21.71025 -20.98654 -20.56389 -19.82621 -18.35540 -17.68866 -17.31939 -17.18293 -16.87839 -16.74512 -16.03597 -15.48230 -15.14201 -14.62110 -14.45084 -14.33802 -14.01808 -13.84070 -13.75654 -13.64940 -13.42035 -13.12249 -12.90967 -12.61333 -12.47076 -12.40226 -12.31488 -12.13182 -11.72049 -11.48807 -11.28401 -11.24919 -11.04355 -10.82629 -10.77895 -10.69615 -10.34184 -10.13186 -9.79370 -9.35751 -9.34266 -8.83686 -8.12052 -7.32553 -6.37462 -4.04109 0.51468 2.02502 2.26121 2.32084 2.44692 2.65577 3.15831 3.25167 3.27848 3.43653 4.07747 4.27296 4.44423 4.47560 4.59146 4.67795 4.74262 4.74772 4.78707 4.89952 4.99929 5.08458 5.10027 5.17897 5.31057 5.36045 5.48078 5.57047 5.61302 5.70901 5.75729 5.86615 5.90007 5.91613 6.14980 6.22378 6.28331 6.55722 6.81850 7.12733 7.23988 7.27613 7.30714 7.35469 7.64172 7.84616 8.08201 8.18785 8.98061 9.61166 10.70346 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012215 B = 0.002248 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.701773 B =12452.406980 C =14292.966992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.496 3.504 4 O -0.512 6.512 5 C -0.176 4.176 6 C -0.060 4.060 7 C 0.165 3.835 8 H 0.101 0.899 9 C -0.161 4.161 10 N -0.734 5.734 11 C 0.517 3.483 12 O -0.515 6.515 13 C -0.093 4.093 14 C -0.036 4.036 15 C -0.188 4.188 16 C -0.076 4.076 17 C -0.217 4.217 18 C 0.160 3.840 19 O -0.219 6.219 20 C -0.388 4.388 21 H 0.106 0.894 22 C 0.062 3.938 23 N -0.881 5.881 24 Si 0.905 3.095 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.260 1.260 28 C -0.174 4.174 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.145 0.855 33 H 0.135 0.865 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.401 0.599 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.110 0.890 42 H 0.132 0.868 43 H 0.279 0.721 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.155 7.915 14.128 28.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.270 6.270 3 C 0.342 3.658 4 O -0.402 6.402 5 C -0.195 4.195 6 C -0.079 4.079 7 C 0.060 3.940 8 H 0.119 0.881 9 C -0.220 4.220 10 N -0.388 5.388 11 C 0.303 3.697 12 O -0.388 6.388 13 C -0.133 4.133 14 C -0.037 4.037 15 C -0.207 4.207 16 C -0.094 4.094 17 C -0.236 4.236 18 C 0.108 3.892 19 O -0.125 6.125 20 C -0.463 4.463 21 H 0.123 0.877 22 C -0.141 4.141 23 N -0.519 5.519 24 Si 0.731 3.269 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.184 1.184 28 C -0.194 4.194 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.082 0.918 32 H 0.163 0.837 33 H 0.153 0.847 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.235 0.765 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.128 0.872 42 H 0.150 0.850 43 H 0.089 0.911 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -22.817 7.288 14.283 27.888 hybrid contribution -0.880 -0.143 -0.532 1.039 sum -23.697 7.145 13.751 28.314 Atomic orbital electron populations 1.23300 0.75881 1.03944 1.02649 1.86612 1.23716 1.32612 1.84078 1.21553 0.90090 0.81431 0.72690 1.90862 1.67265 1.36055 1.46011 1.22032 0.90046 1.00282 1.07188 1.23987 0.96149 0.98258 0.89516 1.20023 0.88979 0.98738 0.86240 0.88096 1.22160 1.02968 1.00511 0.96324 1.46084 1.16686 1.46291 1.29769 1.20805 0.80732 0.82563 0.85558 1.90771 1.53533 1.34531 1.59958 1.20591 0.95969 1.00868 0.95873 1.18644 0.92444 0.95643 0.96929 1.20415 0.92370 1.02847 1.05044 1.20738 0.96144 0.95975 0.96584 1.21299 0.99808 0.99369 1.03150 1.19016 0.93056 0.86914 0.90210 1.83572 1.30819 1.41029 1.57036 1.20760 0.80474 1.20495 1.24619 0.87660 1.24458 0.97088 0.96749 0.95767 1.69647 1.17712 1.32183 1.32405 0.86186 0.82069 0.78784 0.79898 1.19938 1.20829 1.18366 1.19940 0.94603 1.00004 1.04814 0.91740 0.87853 0.91782 0.83720 0.84719 0.91331 0.90863 0.91990 0.76492 0.88161 0.88152 0.87728 0.87180 0.84995 0.91126 0.86836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.57 101.05 1.07 1.28 16 2 O -0.35 -3.08 10.58 -40.79 -0.43 -3.51 16 3 C 0.50 4.66 7.91 34.26 0.27 4.93 16 4 O -0.51 -5.89 16.01 -19.29 -0.31 -6.20 16 5 C -0.18 -1.33 9.76 -37.85 -0.37 -1.70 16 6 C -0.06 -0.41 8.54 -36.10 -0.31 -0.72 16 7 C 0.16 1.33 2.94 -69.08 -0.20 1.13 16 8 H 0.10 0.99 7.25 -51.93 -0.38 0.62 16 9 C -0.16 -1.20 9.47 37.16 0.35 -0.85 16 10 N -0.73 -6.23 5.07 -54.93 -0.28 -6.51 16 11 C 0.52 6.51 7.79 -10.99 -0.09 6.42 16 12 O -0.51 -8.98 15.70 5.56 0.09 -8.90 16 13 C -0.09 -1.09 5.83 -29.03 -0.17 -1.26 16 14 C -0.04 -0.61 4.37 -104.65 -0.46 -1.07 16 15 C -0.19 -3.21 9.70 -39.53 -0.38 -3.59 16 16 C -0.08 -1.42 10.04 -39.61 -0.40 -1.82 16 17 C -0.22 -4.83 9.17 -39.39 -0.36 -5.19 16 18 C 0.16 3.80 6.65 -39.11 -0.26 3.54 16 19 O -0.22 -5.93 8.59 0.02 0.00 -5.93 16 20 C -0.39 -11.13 9.95 30.89 0.31 -10.82 16 21 H 0.11 3.08 5.44 -52.49 -0.29 2.80 16 22 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 23 N -0.88 -25.77 13.96 55.48 0.77 -24.99 16 24 Si 0.90 22.01 28.62 -169.99 -4.86 17.15 16 25 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.26 -6.37 7.11 56.52 0.40 -5.97 16 28 C -0.17 -3.54 9.64 -39.40 -0.38 -3.92 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.15 0.95 7.87 -52.48 -0.41 0.53 16 33 H 0.14 0.85 7.49 -52.48 -0.39 0.46 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.40 2.21 8.59 -40.82 -0.35 1.86 16 38 H 0.10 0.87 8.08 -51.93 -0.42 0.45 16 39 H 0.10 0.97 8.08 -51.93 -0.42 0.55 16 40 H 0.10 1.49 8.06 -52.49 -0.42 1.06 16 41 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 42 H 0.13 3.06 5.64 -52.49 -0.30 2.77 16 43 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.11 2.17 8.06 -52.49 -0.42 1.74 16 LS Contribution 387.41 15.07 5.84 5.84 Total: -1.00 -35.36 387.41 -6.55 -41.91 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -5.89 Total: 3.10 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -1.47 Total: -11.97 kcal Atomic # 7 Polarization: -32.00 SS G_CDS: 0.50 Total: -31.50 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.65 Total: -24.53 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.86 Total: 17.15 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.36 -6.55 -41.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001529289131.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.199 kcal (2) G-P(sol) polarization free energy of solvation -35.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds