Wall clock time and date at job start Tue Mar 31 2020 18:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34810 * 117.00019 * 2 1 4 4 O 1.21533 * 119.99886 * 359.97438 * 3 2 1 5 5 C 1.46951 * 120.00012 * 180.02562 * 3 2 1 6 6 C 1.33074 * 119.99909 * 179.97438 * 5 3 2 7 7 C 1.50701 * 120.00024 * 180.02562 * 6 5 3 8 8 H 1.08998 * 109.47100 * 359.97438 * 7 6 5 9 9 C 1.53009 * 109.46971 * 240.00393 * 7 6 5 10 10 N 1.46497 * 109.47428 * 120.00432 * 7 6 5 11 11 C 1.34779 * 120.00029 * 205.00175 * 10 7 6 12 12 O 1.21280 * 119.99730 * 359.97438 * 11 10 7 13 13 C 1.50697 * 119.99832 * 179.97438 * 11 10 7 14 14 C 1.50703 * 109.47029 * 180.02562 * 13 11 10 15 15 C 1.38326 * 119.96036 * 269.72148 * 14 13 11 16 16 C 1.38280 * 120.13593 * 180.27023 * 15 14 13 17 17 C 1.38125 * 120.06813 * 0.02562 * 16 15 14 18 18 C 1.38857 * 119.92941 * 359.97438 * 17 16 15 19 19 O 1.35759 * 120.06714 * 179.97438 * 18 17 16 20 20 C 1.34831 * 116.99718 * 354.48542 * 19 18 17 21 21 H 1.07998 * 120.00057 * 5.06548 * 20 19 18 22 22 C 1.38654 * 119.99581 * 185.05723 * 20 19 18 23 23 N 1.31558 * 119.99951 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00181 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.47207 * 89.99972 * 24 22 20 26 26 H 1.48498 * 109.46980 * 209.99927 * 24 22 20 27 27 H 1.48496 * 109.46974 * 329.99687 * 24 22 20 28 28 C 1.38074 * 119.96544 * 90.00097 * 14 13 11 29 29 H 1.08996 * 109.47312 * 59.99899 * 1 2 3 30 30 H 1.08993 * 109.47307 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46851 * 300.00002 * 1 2 3 32 32 H 1.08007 * 119.99872 * 0.02562 * 5 3 2 33 33 H 1.08007 * 120.00219 * 0.02562 * 6 5 3 34 34 H 1.08992 * 109.47211 * 60.00186 * 9 7 6 35 35 H 1.09003 * 109.46441 * 180.02562 * 9 7 6 36 36 H 1.08998 * 109.46620 * 299.99573 * 9 7 6 37 37 H 0.97001 * 119.99807 * 24.99616 * 10 7 6 38 38 H 1.08996 * 109.47426 * 60.00133 * 13 11 10 39 39 H 1.08994 * 109.47220 * 299.99909 * 13 11 10 40 40 H 1.07995 * 119.93590 * 0.26096 * 15 14 13 41 41 H 1.07998 * 119.96668 * 180.02562 * 16 15 14 42 42 H 1.08000 * 120.03457 * 179.97438 * 17 16 15 43 43 H 0.96999 * 120.00512 * 179.97438 * 23 22 20 44 44 H 1.08000 * 120.03806 * 359.69747 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0640 1.2012 0.0000 4 8 1.4020 2.2204 -0.0005 5 6 3.5315 1.2781 -0.0006 6 6 4.1356 2.4638 -0.0011 7 6 5.6405 2.5427 -0.0023 8 1 6.0572 1.5355 -0.0021 9 6 6.1130 3.2896 1.2467 10 7 6.0912 3.2579 -1.1987 11 6 7.3261 3.0364 -1.6911 12 8 8.0644 2.2453 -1.1434 13 6 7.7894 3.7718 -2.9222 14 6 9.1946 3.3465 -3.2623 15 6 10.2717 4.0353 -2.7341 16 6 11.5626 3.6517 -3.0482 17 6 11.7802 2.5793 -3.8911 18 6 10.7010 1.8860 -4.4229 19 8 10.9116 0.8319 -5.2521 20 6 12.1869 0.5803 -5.6104 21 1 12.9929 1.1532 -5.1761 22 6 12.4634 -0.4139 -6.5365 23 7 13.7077 -0.6597 -6.8858 24 14 11.0693 -1.4043 -7.2880 25 1 10.5938 -0.7312 -8.5233 26 1 11.5547 -2.7673 -7.6225 27 1 9.9512 -1.5018 -6.3157 28 6 9.4055 2.2735 -4.1052 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.1197 0.3722 -0.0014 33 1 3.5474 3.3696 -0.0007 34 1 5.7778 2.7575 2.1369 35 1 7.2016 3.3471 1.2456 36 1 5.6964 4.2969 1.2470 37 1 5.5007 3.8909 -1.6365 38 1 7.7699 4.8450 -2.7333 39 1 7.1275 3.5376 -3.7559 40 1 10.1042 4.8744 -2.0753 41 1 12.4015 4.1911 -2.6339 42 1 12.7886 2.2804 -4.1363 43 1 13.9013 -1.3555 -7.5334 44 1 8.5642 1.7359 -4.5170 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001529289131.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:13 Heat of formation + Delta-G solvation = -130.573545 kcal Electronic energy + Delta-G solvation = -26811.484148 eV Core-core repulsion = 22694.387047 eV Total energy + Delta-G solvation = -4117.097100 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.46279 -41.18859 -40.53172 -38.45908 -37.82264 -37.08690 -34.47425 -34.12558 -33.38644 -31.31911 -30.93169 -28.78582 -28.34701 -27.16054 -25.55800 -23.51460 -23.07434 -22.19974 -21.51358 -20.67753 -19.64475 -19.07446 -18.78552 -18.10289 -17.71547 -17.38918 -16.92264 -16.78549 -16.76347 -16.03286 -15.71211 -15.60108 -15.17409 -15.07906 -14.85564 -14.59955 -14.41846 -14.35205 -14.15632 -13.90745 -13.79312 -13.45173 -13.06636 -13.02065 -12.88466 -12.77601 -12.50170 -12.43032 -12.32432 -12.14977 -11.91997 -11.84920 -11.75336 -11.30088 -11.08421 -10.90603 -10.72231 -10.15388 -9.64700 -9.04674 -8.49491 -6.22142 -0.11214 0.51061 0.72114 1.30197 1.34829 1.51605 1.65030 1.72635 1.79084 2.28355 2.34864 2.80340 3.06637 3.16843 3.46424 3.78754 3.88288 3.98336 4.09591 4.12420 4.20974 4.27715 4.31138 4.32706 4.37617 4.46883 4.57596 4.68458 4.68686 4.72769 4.74385 4.89866 4.98388 5.03227 5.16758 5.26668 5.27807 5.31587 5.40745 5.49773 5.66948 5.74599 5.78130 5.92977 6.26828 6.58462 6.61616 6.84801 7.32655 7.60062 8.62278 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012215 B = 0.002248 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.701773 B =12452.406980 C =14292.966992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.496 3.504 4 O -0.538 6.538 5 C -0.183 4.183 6 C -0.041 4.041 7 C 0.165 3.835 8 H 0.082 0.918 9 C -0.157 4.157 10 N -0.713 5.713 11 C 0.519 3.481 12 O -0.572 6.572 13 C -0.091 4.091 14 C -0.028 4.028 15 C -0.170 4.170 16 C -0.079 4.079 17 C -0.241 4.241 18 C 0.117 3.883 19 O -0.247 6.247 20 C -0.399 4.399 21 H 0.079 0.921 22 C 0.008 3.992 23 N -0.924 5.924 24 Si 0.972 3.028 25 H -0.262 1.262 26 H -0.267 1.267 27 H -0.266 1.266 28 C -0.181 4.181 29 H 0.063 0.937 30 H 0.129 0.871 31 H 0.065 0.935 32 H 0.152 0.848 33 H 0.147 0.853 34 H 0.078 0.922 35 H 0.050 0.950 36 H 0.080 0.920 37 H 0.420 0.580 38 H 0.145 0.855 39 H 0.127 0.873 40 H 0.150 0.850 41 H 0.139 0.861 42 H 0.106 0.894 43 H 0.284 0.716 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.544 9.958 15.265 32.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.344 3.656 4 O -0.430 6.430 5 C -0.202 4.202 6 C -0.060 4.060 7 C 0.061 3.939 8 H 0.100 0.900 9 C -0.215 4.215 10 N -0.368 5.368 11 C 0.306 3.694 12 O -0.450 6.450 13 C -0.130 4.130 14 C -0.028 4.028 15 C -0.188 4.188 16 C -0.097 4.097 17 C -0.260 4.260 18 C 0.068 3.932 19 O -0.155 6.155 20 C -0.475 4.475 21 H 0.097 0.903 22 C -0.190 4.190 23 N -0.565 5.565 24 Si 0.794 3.206 25 H -0.187 1.187 26 H -0.191 1.191 27 H -0.191 1.191 28 C -0.200 4.200 29 H 0.082 0.918 30 H 0.147 0.853 31 H 0.084 0.916 32 H 0.170 0.830 33 H 0.165 0.835 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.257 0.743 38 H 0.163 0.837 39 H 0.145 0.855 40 H 0.167 0.833 41 H 0.157 0.843 42 H 0.124 0.876 43 H 0.094 0.906 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -26.264 9.384 15.439 31.879 hybrid contribution 0.032 -0.530 -0.635 0.828 sum -26.232 8.855 14.804 31.395 Atomic orbital electron populations 1.23566 0.74428 1.05759 1.02717 1.86606 1.25283 1.32342 1.83739 1.21809 0.90619 0.81258 0.71954 1.90844 1.67922 1.36757 1.47504 1.22090 0.89319 1.01006 1.07824 1.23885 0.95149 0.98467 0.88508 1.20000 0.89581 0.97938 0.86395 0.90023 1.22114 1.01527 1.01618 0.96270 1.45863 1.15652 1.45806 1.29446 1.20898 0.81281 0.81771 0.85411 1.90775 1.55391 1.37136 1.61738 1.20716 0.92682 1.03217 0.96374 1.19234 0.95734 0.93497 0.94385 1.21023 0.91337 1.02948 1.03492 1.21116 0.98462 0.94724 0.95390 1.21319 0.98431 1.01264 1.05028 1.19624 0.95096 0.87415 0.91052 1.83509 1.29307 1.43412 1.59295 1.20701 0.81062 1.20707 1.25029 0.90330 1.25297 0.99661 0.97813 0.96254 1.69731 1.19449 1.33521 1.33781 0.85201 0.78557 0.77874 0.78962 1.18710 1.19137 1.19077 1.20289 0.93272 1.01061 1.05400 0.91821 0.85260 0.91596 0.83040 0.83530 0.90329 0.93047 0.90147 0.74254 0.83720 0.85510 0.83278 0.84275 0.87645 0.90595 0.86006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.57 113.37 1.20 1.48 16 2 O -0.36 -5.85 10.58 -57.22 -0.61 -6.45 16 3 C 0.50 8.59 7.91 70.10 0.55 9.14 16 4 O -0.54 -11.59 16.01 19.73 0.32 -11.28 16 5 C -0.18 -2.42 9.76 23.40 0.23 -2.19 16 6 C -0.04 -0.45 8.54 24.53 0.21 -0.24 16 7 C 0.17 2.25 2.94 44.25 0.13 2.38 16 8 H 0.08 1.50 7.25 -2.39 -0.02 1.48 16 9 C -0.16 -1.93 9.47 71.99 0.68 -1.25 16 10 N -0.71 -9.44 5.07 -446.09 -2.26 -11.70 16 11 C 0.52 11.28 7.79 87.66 0.68 11.96 16 12 O -0.57 -19.03 15.70 -3.03 -0.05 -19.08 16 13 C -0.09 -1.67 5.83 29.10 0.17 -1.50 16 14 C -0.03 -0.86 4.37 -19.88 -0.09 -0.95 16 15 C -0.17 -5.17 9.70 22.30 0.22 -4.96 16 16 C -0.08 -2.85 10.04 22.25 0.22 -2.63 16 17 C -0.24 -11.20 9.17 22.39 0.21 -11.00 16 18 C 0.12 5.77 6.65 22.58 0.15 5.92 16 19 O -0.25 -14.06 8.59 -22.85 -0.20 -14.26 16 20 C -0.40 -24.38 9.95 67.92 0.68 -23.70 16 21 H 0.08 5.04 5.44 -2.91 -0.02 5.03 16 22 C 0.01 0.46 5.49 84.83 0.47 0.93 16 23 N -0.92 -56.47 13.96 21.61 0.30 -56.17 16 24 Si 0.97 46.73 28.62 68.60 1.96 48.70 16 25 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 26 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 27 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 28 C -0.18 -7.25 9.64 22.39 0.22 -7.03 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.15 1.77 7.87 -2.91 -0.02 1.74 16 33 H 0.15 1.34 7.49 -2.91 -0.02 1.32 16 34 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.42 2.56 8.59 -92.71 -0.80 1.76 16 38 H 0.15 1.48 8.08 -2.39 -0.02 1.46 16 39 H 0.13 1.77 8.08 -2.39 -0.02 1.75 16 40 H 0.15 3.31 8.06 -2.91 -0.02 3.28 16 41 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 42 H 0.11 5.36 5.64 -2.91 -0.02 5.35 16 43 H 0.28 15.91 8.31 -92.71 -0.77 15.14 16 44 H 0.12 4.56 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -83.13 387.41 5.62 -77.50 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.23 Total: 16.37 kcal Atomic # 6 Polarization: -29.55 SS G_CDS: 5.92 Total: -23.63 kcal Atomic # 7 Polarization: -65.91 SS G_CDS: -1.96 Total: -67.87 kcal Atomic # 8 Polarization: -50.54 SS G_CDS: -0.53 Total: -51.07 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 1.96 Total: 48.70 kcal Total: -83.13 5.62 -77.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001529289131.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.071 kcal (2) G-P(sol) polarization free energy of solvation -83.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds