Wall clock time and date at job start Tue Mar 31 2020 18:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.51519 * 2 1 4 4 C 1.53298 * 109.51141 * 239.89456 * 2 1 3 5 5 N 1.47148 * 108.38130 * 292.32968 * 4 2 1 6 6 C 1.34783 * 120.98114 * 129.44439 * 5 4 2 7 7 O 1.21279 * 119.99820 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00331 * 179.97438 * 6 5 4 9 9 C 1.50691 * 109.47532 * 179.97438 * 8 6 5 10 10 C 1.37636 * 120.13038 * 265.26186 * 9 8 6 11 11 C 1.38613 * 120.25056 * 180.25573 * 10 9 8 12 12 C 1.38655 * 120.49851 * 359.73768 * 11 10 9 13 13 C 1.37595 * 120.25237 * 359.97438 * 12 11 10 14 14 C 1.40694 * 120.12775 * 84.99923 * 9 8 6 15 15 C 1.41403 * 120.24395 * 0.03012 * 14 9 8 16 16 H 1.07997 * 119.99679 * 333.73282 * 15 14 9 17 17 C 1.39941 * 119.99898 * 154.00949 * 15 14 9 18 18 N 1.30816 * 120.00644 * 343.45515 * 17 15 14 19 19 Si 1.86802 * 119.99650 * 163.45078 * 17 15 14 20 20 H 1.48503 * 109.47123 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47213 * 119.99832 * 19 17 15 22 22 H 1.48499 * 109.47192 * 240.00142 * 19 17 15 23 23 C 1.47158 * 118.03842 * 309.71299 * 5 4 2 24 24 C 1.52871 * 108.60599 * 50.23175 * 23 5 4 25 25 H 1.09005 * 109.41092 * 67.83934 * 24 23 5 26 26 C 1.50698 * 109.58663 * 187.92194 * 24 23 5 27 27 O 1.20826 * 120.00288 * 114.87818 * 26 24 23 28 28 O 1.34226 * 119.99829 * 294.88353 * 26 24 23 29 29 O 1.42966 * 109.30093 * 307.93436 * 24 23 5 30 30 H 1.09000 * 109.47419 * 180.10553 * 1 2 3 31 31 H 1.09004 * 109.46788 * 300.10979 * 1 2 3 32 32 H 1.09001 * 109.46863 * 60.09927 * 1 2 3 33 33 H 1.09003 * 109.67899 * 172.60653 * 4 2 1 34 34 H 1.08994 * 109.71347 * 52.07147 * 4 2 1 35 35 H 1.09007 * 109.46448 * 59.99917 * 8 6 5 36 36 H 1.09003 * 109.47514 * 300.00613 * 8 6 5 37 37 H 1.07999 * 119.87628 * 359.97200 * 10 9 8 38 38 H 1.07998 * 119.75060 * 179.71803 * 11 10 9 39 39 H 1.08004 * 119.87332 * 180.02562 * 12 11 10 40 40 H 1.08001 * 120.13339 * 180.02562 * 13 12 11 41 41 H 0.96998 * 120.00223 * 180.02562 * 18 17 15 42 42 H 1.08998 * 109.67803 * 170.00827 * 23 5 4 43 43 H 1.08999 * 109.68107 * 290.56318 * 23 5 4 44 44 H 0.96700 * 117.00326 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7248 -1.2500 5 7 1.6969 -2.1505 -1.1338 6 6 1.0718 -2.7971 -2.1376 7 8 0.7857 -2.2036 -3.1559 8 6 0.7292 -4.2577 -1.9953 9 6 0.0400 -4.7364 -3.2469 10 6 -1.3346 -4.7540 -3.3151 11 6 -1.9712 -5.1988 -4.4633 12 6 -1.2331 -5.6254 -5.5568 13 6 0.1421 -5.6110 -5.5132 14 6 0.7991 -5.1619 -4.3524 15 6 2.2119 -5.1437 -4.2957 16 1 2.7170 -4.4502 -3.6397 17 6 2.9556 -6.0202 -5.0939 18 7 2.3770 -7.0590 -5.6392 19 14 4.7746 -5.7067 -5.3807 20 1 5.1848 -4.4758 -4.6582 21 1 5.5614 -6.8610 -4.8769 22 1 5.0241 -5.5343 -6.8344 23 6 2.0491 -2.8480 0.1132 24 6 1.5416 -2.0212 1.2946 25 1 0.4515 -2.0292 1.3007 26 6 2.0564 -2.6110 2.5823 27 8 2.8245 -1.9817 3.2705 28 8 1.6616 -3.8357 2.9645 29 8 2.0085 -0.6761 1.1653 30 1 -0.3634 -1.0276 0.0019 31 1 -0.3633 0.5156 0.8890 32 1 -0.3633 0.5123 -0.8909 33 1 3.1240 -0.6135 -1.3215 34 1 1.5703 -0.3041 -2.1380 35 1 0.0659 -4.3936 -1.1410 36 1 1.6428 -4.8319 -1.8408 37 1 -1.9194 -4.4242 -2.4692 38 1 -3.0502 -5.2134 -4.5063 39 1 -1.7395 -5.9697 -6.4464 40 1 0.7151 -5.9434 -6.3662 41 1 2.8926 -7.6666 -6.1922 42 1 1.5814 -3.8325 0.1277 43 1 3.1318 -2.9542 0.1812 44 1 2.0189 -4.1720 3.7978 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571076987.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:33 Heat of formation + Delta-G solvation = -141.359479 kcal Electronic energy + Delta-G solvation = -29473.376888 eV Core-core repulsion = 25355.812074 eV Total energy + Delta-G solvation = -4117.564814 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.07137 -39.90264 -38.53239 -37.24079 -36.36926 -34.63749 -33.63583 -33.10573 -31.62727 -29.74339 -29.47306 -27.68333 -25.95568 -25.16714 -24.85311 -22.54438 -20.98253 -20.78617 -19.80820 -18.87311 -18.42456 -17.45597 -17.17465 -16.70049 -16.57633 -16.34386 -15.48356 -15.33792 -15.11827 -14.77923 -14.61861 -14.40777 -13.97052 -13.63291 -13.46456 -13.23816 -12.94445 -12.60622 -12.42229 -12.25026 -12.17833 -11.84864 -11.69986 -11.58892 -11.57592 -11.20734 -11.10286 -11.08345 -10.98357 -10.69138 -10.56392 -10.39877 -10.33742 -9.50206 -9.38719 -9.26768 -9.17324 -8.49377 -7.33060 -7.30951 -6.75024 -4.35932 1.83525 2.23228 2.73429 2.87343 3.06893 3.12121 3.14207 3.16235 3.25492 3.77927 3.92931 4.32451 4.52562 4.61914 4.64670 4.74454 4.84791 5.01504 5.04444 5.17198 5.41255 5.50302 5.57964 5.67122 5.72636 5.76952 5.94233 5.95075 6.02943 6.16105 6.25212 6.37984 6.48508 6.53221 6.69801 6.77484 7.07447 7.27857 7.40556 7.53310 7.58966 7.65810 7.90720 8.05382 8.11792 8.29861 8.61875 8.67442 8.90337 8.99936 10.19106 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011860 B = 0.003908 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.306102 B = 7163.343082 C = 7946.487830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.077 3.923 3 H 0.121 0.879 4 C 0.080 3.920 5 N -0.626 5.626 6 C 0.522 3.478 7 O -0.510 6.510 8 C -0.070 4.070 9 C -0.184 4.184 10 C -0.080 4.080 11 C -0.239 4.239 12 C -0.106 4.106 13 C -0.159 4.159 14 C 0.130 3.870 15 C -0.456 4.456 16 H 0.074 0.926 17 C 0.078 3.922 18 N -0.794 5.794 19 Si 0.901 3.099 20 H -0.262 1.262 21 H -0.275 1.275 22 H -0.272 1.272 23 C 0.091 3.909 24 C 0.084 3.916 25 H 0.106 0.894 26 C 0.490 3.510 27 O -0.492 6.492 28 O -0.508 6.508 29 O -0.352 6.352 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.117 0.883 41 H 0.279 0.721 42 H 0.112 0.888 43 H 0.081 0.919 44 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.460 7.084 13.404 15.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.020 3.980 3 H 0.139 0.861 4 C -0.043 4.043 5 N -0.364 5.364 6 C 0.312 3.688 7 O -0.383 6.383 8 C -0.110 4.110 9 C -0.186 4.186 10 C -0.098 4.098 11 C -0.259 4.259 12 C -0.125 4.125 13 C -0.178 4.178 14 C 0.127 3.873 15 C -0.486 4.486 16 H 0.092 0.908 17 C -0.140 4.140 18 N -0.420 5.420 19 Si 0.726 3.274 20 H -0.185 1.185 21 H -0.200 1.200 22 H -0.197 1.197 23 C -0.033 4.033 24 C 0.024 3.976 25 H 0.124 0.876 26 C 0.330 3.670 27 O -0.378 6.378 28 O -0.321 6.321 29 O -0.271 6.271 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.124 0.876 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.135 0.865 41 H 0.090 0.910 42 H 0.131 0.869 43 H 0.099 0.901 44 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -0.389 7.602 12.610 14.730 hybrid contribution 0.969 -0.242 0.252 1.030 sum 0.580 7.361 12.862 14.831 Atomic orbital electron populations 1.22399 0.95425 1.03212 1.03193 1.22771 0.94472 0.96553 0.84243 0.86130 1.22256 1.01049 0.81841 0.99180 1.48251 1.61643 1.10272 1.16274 1.21348 0.75594 0.90041 0.81791 1.90684 1.51517 1.68335 1.27769 1.20314 1.01840 0.90544 0.98253 1.19029 0.92465 1.12487 0.94590 1.20282 0.93601 0.99468 0.96474 1.20301 0.96970 1.12532 0.96056 1.20682 0.94754 1.00285 0.96768 1.21299 0.92604 1.05118 0.98776 1.17334 0.92845 0.87746 0.89357 1.19490 0.91262 1.16806 1.21029 0.90833 1.25866 1.00787 0.93631 0.93697 1.69819 1.38262 1.09154 1.24717 0.86369 0.82419 0.79410 0.79195 1.18544 1.19999 1.19688 1.22070 1.01961 0.96671 0.82644 1.21614 1.00409 0.85372 0.90246 0.87630 1.22634 0.78326 0.79300 0.86751 1.90752 1.32260 1.60683 1.54080 1.84486 1.69368 1.32744 1.45519 1.88061 1.72043 1.22562 1.44433 0.91834 0.91620 0.90629 0.90810 0.87606 0.90504 0.88400 0.89811 0.89665 0.89581 0.86536 0.90990 0.86949 0.90117 0.72331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.82 8.81 37.16 0.33 -1.50 16 2 C 0.08 0.81 3.93 -26.58 -0.10 0.70 16 3 H 0.12 1.01 8.14 -51.93 -0.42 0.58 16 4 C 0.08 1.01 6.02 -3.53 -0.02 0.99 16 5 N -0.63 -9.01 2.55 -172.53 -0.44 -9.45 16 6 C 0.52 9.70 7.34 -10.98 -0.08 9.62 16 7 O -0.51 -11.61 15.50 5.56 0.09 -11.52 16 8 C -0.07 -1.31 3.56 -29.04 -0.10 -1.41 16 9 C -0.18 -4.29 4.43 -103.92 -0.46 -4.75 16 10 C -0.08 -1.79 9.66 -39.66 -0.38 -2.17 16 11 C -0.24 -5.45 10.05 -39.29 -0.39 -5.85 16 12 C -0.11 -2.56 10.02 -39.66 -0.40 -2.95 16 13 C -0.16 -4.18 8.69 -38.87 -0.34 -4.52 16 14 C 0.13 3.39 5.56 -106.82 -0.59 2.80 16 15 C -0.46 -11.80 8.14 -37.74 -0.31 -12.10 16 16 H 0.07 1.86 6.69 -52.49 -0.35 1.51 16 17 C 0.08 1.93 5.16 -17.35 -0.09 1.84 16 18 N -0.79 -20.23 10.96 55.55 0.61 -19.62 16 19 Si 0.90 18.73 29.59 -169.99 -5.03 13.70 16 20 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 23 C 0.09 1.06 5.79 -3.75 -0.02 1.03 16 24 C 0.08 0.90 2.90 -27.95 -0.08 0.82 16 25 H 0.11 1.01 6.26 -51.93 -0.32 0.69 16 26 C 0.49 5.24 7.66 36.00 0.28 5.52 16 27 O -0.49 -6.88 17.27 -25.46 -0.44 -7.32 16 28 O -0.51 -3.83 13.42 -39.25 -0.53 -4.36 16 29 O -0.35 -4.27 9.77 -55.11 -0.54 -4.81 16 30 H 0.06 0.69 6.11 -51.93 -0.32 0.37 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.11 1.46 7.08 -51.93 -0.37 1.09 16 35 H 0.08 1.18 7.56 -51.93 -0.39 0.78 16 36 H 0.10 1.81 6.95 -51.93 -0.36 1.45 16 37 H 0.08 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 39 H 0.09 1.85 8.06 -52.48 -0.42 1.43 16 40 H 0.12 3.16 6.21 -52.49 -0.33 2.84 16 41 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 42 H 0.11 1.18 6.05 -51.93 -0.31 0.87 16 43 H 0.08 0.92 8.13 -51.93 -0.42 0.50 16 44 H 0.42 1.33 9.10 45.56 0.41 1.75 16 LS Contribution 363.26 15.07 5.47 5.47 Total: -1.00 -33.38 363.26 -8.43 -41.81 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -4.86 Total: 8.03 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -2.77 Total: -11.93 kcal Atomic # 7 Polarization: -29.23 SS G_CDS: 0.17 Total: -29.06 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -1.42 Total: -28.01 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.38 -8.43 -41.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571076987.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.550 kcal (2) G-P(sol) polarization free energy of solvation -33.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds