Wall clock time and date at job start Tue Mar 31 2020 18:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.51519 * 2 1 4 4 C 1.53298 * 109.51141 * 239.89456 * 2 1 3 5 5 N 1.47148 * 108.38130 * 292.32968 * 4 2 1 6 6 C 1.34783 * 120.98114 * 129.44439 * 5 4 2 7 7 O 1.21279 * 119.99820 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00331 * 179.97438 * 6 5 4 9 9 C 1.50691 * 109.47532 * 179.97438 * 8 6 5 10 10 C 1.37636 * 120.13038 * 265.26186 * 9 8 6 11 11 C 1.38613 * 120.25056 * 180.25573 * 10 9 8 12 12 C 1.38655 * 120.49851 * 359.73768 * 11 10 9 13 13 C 1.37595 * 120.25237 * 359.97438 * 12 11 10 14 14 C 1.40694 * 120.12775 * 84.99923 * 9 8 6 15 15 C 1.41403 * 120.24395 * 0.03012 * 14 9 8 16 16 H 1.07997 * 119.99679 * 333.73282 * 15 14 9 17 17 C 1.39941 * 119.99898 * 154.00949 * 15 14 9 18 18 N 1.30816 * 120.00644 * 343.45515 * 17 15 14 19 19 Si 1.86802 * 119.99650 * 163.45078 * 17 15 14 20 20 H 1.48503 * 109.47123 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47213 * 119.99832 * 19 17 15 22 22 H 1.48499 * 109.47192 * 240.00142 * 19 17 15 23 23 C 1.47158 * 118.03842 * 309.71299 * 5 4 2 24 24 C 1.52871 * 108.60599 * 50.23175 * 23 5 4 25 25 H 1.09005 * 109.41092 * 67.83934 * 24 23 5 26 26 C 1.50698 * 109.58663 * 187.92194 * 24 23 5 27 27 O 1.20826 * 120.00288 * 114.87818 * 26 24 23 28 28 O 1.34226 * 119.99829 * 294.88353 * 26 24 23 29 29 O 1.42966 * 109.30093 * 307.93436 * 24 23 5 30 30 H 1.09000 * 109.47419 * 180.10553 * 1 2 3 31 31 H 1.09004 * 109.46788 * 300.10979 * 1 2 3 32 32 H 1.09001 * 109.46863 * 60.09927 * 1 2 3 33 33 H 1.09003 * 109.67899 * 172.60653 * 4 2 1 34 34 H 1.08994 * 109.71347 * 52.07147 * 4 2 1 35 35 H 1.09007 * 109.46448 * 59.99917 * 8 6 5 36 36 H 1.09003 * 109.47514 * 300.00613 * 8 6 5 37 37 H 1.07999 * 119.87628 * 359.97200 * 10 9 8 38 38 H 1.07998 * 119.75060 * 179.71803 * 11 10 9 39 39 H 1.08004 * 119.87332 * 180.02562 * 12 11 10 40 40 H 1.08001 * 120.13339 * 180.02562 * 13 12 11 41 41 H 0.96998 * 120.00223 * 180.02562 * 18 17 15 42 42 H 1.08998 * 109.67803 * 170.00827 * 23 5 4 43 43 H 1.08999 * 109.68107 * 290.56318 * 23 5 4 44 44 H 0.96700 * 117.00326 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7248 -1.2500 5 7 1.6969 -2.1505 -1.1338 6 6 1.0718 -2.7971 -2.1376 7 8 0.7857 -2.2036 -3.1559 8 6 0.7292 -4.2577 -1.9953 9 6 0.0400 -4.7364 -3.2469 10 6 -1.3346 -4.7540 -3.3151 11 6 -1.9712 -5.1988 -4.4633 12 6 -1.2331 -5.6254 -5.5568 13 6 0.1421 -5.6110 -5.5132 14 6 0.7991 -5.1619 -4.3524 15 6 2.2119 -5.1437 -4.2957 16 1 2.7170 -4.4502 -3.6397 17 6 2.9556 -6.0202 -5.0939 18 7 2.3770 -7.0590 -5.6392 19 14 4.7746 -5.7067 -5.3807 20 1 5.1848 -4.4758 -4.6582 21 1 5.5614 -6.8610 -4.8769 22 1 5.0241 -5.5343 -6.8344 23 6 2.0491 -2.8480 0.1132 24 6 1.5416 -2.0212 1.2946 25 1 0.4515 -2.0292 1.3007 26 6 2.0564 -2.6110 2.5823 27 8 2.8245 -1.9817 3.2705 28 8 1.6616 -3.8357 2.9645 29 8 2.0085 -0.6761 1.1653 30 1 -0.3634 -1.0276 0.0019 31 1 -0.3633 0.5156 0.8890 32 1 -0.3633 0.5123 -0.8909 33 1 3.1240 -0.6135 -1.3215 34 1 1.5703 -0.3041 -2.1380 35 1 0.0659 -4.3936 -1.1410 36 1 1.6428 -4.8319 -1.8408 37 1 -1.9194 -4.4242 -2.4692 38 1 -3.0502 -5.2134 -4.5063 39 1 -1.7395 -5.9697 -6.4464 40 1 0.7151 -5.9434 -6.3662 41 1 2.8926 -7.6666 -6.1922 42 1 1.5814 -3.8325 0.1277 43 1 3.1318 -2.9542 0.1812 44 1 2.0189 -4.1720 3.7978 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571076987.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:32 Heat of formation + Delta-G solvation = -162.308121 kcal Electronic energy + Delta-G solvation = -29474.285289 eV Core-core repulsion = 25355.812074 eV Total energy + Delta-G solvation = -4118.473215 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.02288 -40.95918 -39.83567 -38.87055 -37.15429 -35.83328 -35.48929 -34.09453 -33.19070 -31.33203 -30.67367 -29.10338 -27.38507 -26.54203 -26.09767 -23.44494 -22.80800 -22.08623 -21.11179 -20.06639 -19.27231 -19.04666 -18.50309 -17.70969 -17.62983 -17.38981 -17.13555 -16.54529 -16.30106 -16.09884 -15.69775 -15.57918 -15.37645 -15.25548 -14.65693 -14.51953 -14.36215 -14.10661 -13.58189 -13.39084 -13.30324 -13.16763 -12.99705 -12.86421 -12.75176 -12.70213 -12.60642 -12.49004 -12.40647 -12.11755 -11.94541 -11.53203 -11.30423 -11.26199 -11.18636 -11.02333 -10.74437 -9.64690 -9.20575 -9.14503 -8.59002 -6.28328 0.97810 1.01928 1.14559 1.35908 1.48213 1.49338 1.52139 1.73931 1.89384 2.19491 2.78864 2.94446 3.42603 3.53498 3.75962 3.79696 3.94038 3.98857 4.11534 4.16591 4.28028 4.33587 4.40643 4.52898 4.59894 4.62871 4.70028 4.73391 4.78496 4.80818 4.88958 5.06962 5.17407 5.20923 5.38492 5.41833 5.52026 5.56496 5.78739 5.87341 6.04688 6.17331 6.23640 6.31390 6.43466 6.75511 6.93316 7.00585 7.12884 7.27156 8.37442 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011860 B = 0.003908 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.306102 B = 7163.343082 C = 7946.487830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.084 3.916 3 H 0.144 0.856 4 C 0.075 3.925 5 N -0.618 5.618 6 C 0.526 3.474 7 O -0.562 6.562 8 C -0.069 4.069 9 C -0.187 4.187 10 C -0.089 4.089 11 C -0.241 4.241 12 C -0.118 4.118 13 C -0.193 4.193 14 C 0.097 3.903 15 C -0.481 4.481 16 H 0.069 0.931 17 C 0.038 3.962 18 N -0.825 5.825 19 Si 0.968 3.032 20 H -0.264 1.264 21 H -0.261 1.261 22 H -0.270 1.270 23 C 0.087 3.913 24 C 0.084 3.916 25 H 0.123 0.877 26 C 0.501 3.499 27 O -0.529 6.529 28 O -0.497 6.497 29 O -0.365 6.365 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.116 0.884 36 H 0.097 0.903 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.285 0.715 42 H 0.127 0.873 43 H 0.084 0.916 44 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.747 7.532 15.609 17.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.027 3.973 3 H 0.162 0.838 4 C -0.047 4.047 5 N -0.353 5.353 6 C 0.316 3.684 7 O -0.439 6.439 8 C -0.108 4.108 9 C -0.189 4.189 10 C -0.107 4.107 11 C -0.260 4.260 12 C -0.136 4.136 13 C -0.213 4.213 14 C 0.095 3.905 15 C -0.511 4.511 16 H 0.087 0.913 17 C -0.176 4.176 18 N -0.452 5.452 19 Si 0.789 3.211 20 H -0.188 1.188 21 H -0.185 1.185 22 H -0.195 1.195 23 C -0.036 4.036 24 C 0.024 3.976 25 H 0.140 0.860 26 C 0.342 3.658 27 O -0.418 6.418 28 O -0.312 6.312 29 O -0.285 6.285 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.134 0.866 36 H 0.115 0.885 37 H 0.137 0.863 38 H 0.133 0.867 39 H 0.121 0.879 40 H 0.113 0.887 41 H 0.096 0.904 42 H 0.145 0.855 43 H 0.102 0.898 44 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges -0.675 8.024 14.875 16.915 hybrid contribution 0.950 -0.398 -0.357 1.090 sum 0.275 7.626 14.518 16.401 Atomic orbital electron populations 1.22372 0.94823 1.02776 1.03895 1.22834 0.94879 0.97077 0.82496 0.83815 1.22411 1.01299 0.80937 1.00080 1.48135 1.59942 1.11034 1.16207 1.21172 0.75569 0.89851 0.81798 1.90667 1.54083 1.69283 1.29913 1.20326 1.02302 0.90631 0.97548 1.19515 0.93256 1.10764 0.95391 1.20728 0.93652 0.98729 0.97547 1.20718 0.98540 1.11172 0.95596 1.20947 0.94158 1.00296 0.98187 1.21297 0.93713 1.07517 0.98770 1.17717 0.93612 0.88837 0.90361 1.19607 0.91657 1.17496 1.22312 0.91262 1.26601 1.04806 0.93067 0.93139 1.69877 1.39959 1.09919 1.25415 0.85378 0.77412 0.79367 0.78904 1.18818 1.18523 1.19513 1.22266 1.02443 0.97281 0.81634 1.21664 1.01287 0.84730 0.89876 0.86003 1.22521 0.77363 0.79644 0.86235 1.90749 1.33975 1.61844 1.55224 1.84444 1.68859 1.31071 1.46834 1.88065 1.72478 1.23161 1.44749 0.92801 0.90076 0.90760 0.90410 0.89004 0.86591 0.88478 0.86327 0.86706 0.87851 0.88691 0.90408 0.85546 0.89802 0.69942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 8.81 71.98 0.63 -2.53 16 2 C 0.08 1.58 3.93 30.69 0.12 1.70 16 3 H 0.14 2.03 8.14 -2.39 -0.02 2.01 16 4 C 0.08 1.83 6.02 86.36 0.52 2.35 16 5 N -0.62 -16.91 2.55 -818.16 -2.08 -18.99 16 6 C 0.53 19.13 7.34 87.66 0.64 19.77 16 7 O -0.56 -25.86 15.50 -3.03 -0.05 -25.91 16 8 C -0.07 -2.47 3.56 29.10 0.10 -2.37 16 9 C -0.19 -8.67 4.43 -19.41 -0.09 -8.75 16 10 C -0.09 -3.81 9.66 22.22 0.21 -3.59 16 11 C -0.24 -10.64 10.05 22.46 0.23 -10.42 16 12 C -0.12 -5.69 10.02 22.22 0.22 -5.47 16 13 C -0.19 -10.55 8.69 22.73 0.20 -10.36 16 14 C 0.10 5.20 5.56 -21.29 -0.12 5.08 16 15 C -0.48 -25.57 8.14 23.46 0.19 -25.37 16 16 H 0.07 3.60 6.69 -2.91 -0.02 3.58 16 17 C 0.04 1.94 5.16 85.26 0.44 2.38 16 18 N -0.83 -43.36 10.96 21.82 0.24 -43.12 16 19 Si 0.97 39.02 29.59 68.60 2.03 41.05 16 20 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 21 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 22 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 23 C 0.09 1.82 5.79 86.21 0.50 2.32 16 24 C 0.08 1.60 2.90 29.80 0.09 1.69 16 25 H 0.12 1.94 6.26 -2.38 -0.01 1.92 16 26 C 0.50 9.47 7.66 71.24 0.55 10.01 16 27 O -0.53 -13.87 17.27 28.37 0.49 -13.38 16 28 O -0.50 -5.92 13.42 -51.38 -0.69 -6.61 16 29 O -0.37 -8.02 9.77 -129.98 -1.27 -9.29 16 30 H 0.05 1.04 6.11 -2.39 -0.01 1.03 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.09 2.53 7.08 -2.39 -0.02 2.51 16 35 H 0.12 3.17 7.56 -2.38 -0.02 3.15 16 36 H 0.10 3.51 6.95 -2.39 -0.02 3.50 16 37 H 0.12 4.20 8.06 -2.91 -0.02 4.18 16 38 H 0.11 4.31 8.06 -2.91 -0.02 4.29 16 39 H 0.10 4.47 8.06 -2.91 -0.02 4.44 16 40 H 0.10 5.46 6.21 -2.91 -0.02 5.44 16 41 H 0.29 13.61 8.30 -92.71 -0.77 12.84 16 42 H 0.13 2.28 6.05 -2.39 -0.01 2.26 16 43 H 0.08 1.75 8.13 -2.39 -0.02 1.73 16 44 H 0.44 1.43 9.10 -74.06 -0.67 0.75 16 Total: -1.00 -74.46 363.26 3.49 -70.98 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: 0.38 Total: 28.83 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: 4.44 Total: -23.56 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: -1.84 Total: -62.11 kcal Atomic # 8 Polarization: -53.67 SS G_CDS: -1.52 Total: -55.19 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Total: -74.46 3.49 -70.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571076987.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.331 kcal (2) G-P(sol) polarization free energy of solvation -74.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds