Wall clock time and date at job start Tue Mar 31 2020 17:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50700 * 119.99668 * 2 1 4 4 O 1.42905 * 109.46814 * 135.00033 * 3 2 1 5 5 C 1.42902 * 113.99839 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47090 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.46781 * 184.99884 * 6 5 4 8 8 N 1.46500 * 109.46749 * 65.00176 * 6 5 4 9 9 C 1.34775 * 119.99907 * 155.00061 * 8 6 5 10 10 O 1.21280 * 120.00226 * 359.97438 * 9 8 6 11 11 C 1.50700 * 120.00152 * 179.97438 * 9 8 6 12 12 H 1.08998 * 109.47435 * 321.82432 * 11 9 8 13 13 C 1.50700 * 109.47206 * 81.82437 * 11 9 8 14 14 H 1.08000 * 119.99803 * 54.38153 * 13 11 9 15 15 C 1.37877 * 119.99951 * 234.38283 * 13 11 9 16 16 N 1.31516 * 119.99786 * 172.37670 * 15 13 11 17 17 Si 1.86795 * 120.00260 * 352.37618 * 15 13 11 18 18 H 1.48498 * 109.47133 * 83.59799 * 17 15 13 19 19 H 1.48499 * 109.47180 * 203.60191 * 17 15 13 20 20 H 1.48507 * 109.47066 * 323.59946 * 17 15 13 21 21 C 1.50703 * 109.47194 * 201.82274 * 11 9 8 22 22 C 1.38230 * 120.00007 * 292.61768 * 21 11 9 23 23 C 1.38244 * 119.99711 * 179.78760 * 22 21 11 24 24 C 1.38231 * 119.99975 * 0.44358 * 23 22 21 25 25 C 1.38234 * 120.00046 * 359.80860 * 24 23 22 26 26 C 1.38234 * 119.99998 * 359.97438 * 25 24 23 27 27 C 1.50695 * 109.47054 * 305.00213 * 6 5 4 28 28 O 1.20826 * 120.00086 * 120.00240 * 27 6 5 29 29 O 1.34224 * 120.00066 * 299.72300 * 27 6 5 30 30 H 1.08003 * 119.99628 * 180.02562 * 1 2 3 31 31 H 1.08001 * 119.99949 * 359.97438 * 1 2 3 32 32 H 1.07996 * 119.99646 * 179.97438 * 2 1 3 33 33 H 1.08995 * 109.47534 * 14.99980 * 3 2 1 34 34 H 1.09001 * 109.47039 * 254.99603 * 3 2 1 35 35 H 1.08998 * 109.46974 * 59.99659 * 5 4 3 36 36 H 1.09002 * 109.46826 * 300.00123 * 5 4 3 37 37 H 0.96996 * 120.00291 * 334.99467 * 8 6 5 38 38 H 0.97000 * 120.00073 * 180.02562 * 16 15 13 39 39 H 1.07993 * 120.00261 * 359.97438 * 22 21 11 40 40 H 1.08000 * 119.99397 * 180.27231 * 23 22 21 41 41 H 1.07997 * 120.00036 * 179.83506 * 24 23 22 42 42 H 1.07999 * 119.99919 * 180.02562 * 25 24 23 43 43 H 1.08004 * 119.99868 * 179.97438 * 26 25 24 44 44 H 0.96694 * 117.00276 * 180.27940 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9084 2.4350 1.0321 6 6 5.0105 2.2542 2.0779 7 1 5.5505 3.1928 2.2024 8 7 5.9389 1.2117 1.6336 9 6 7.2104 1.2067 2.0805 10 8 7.5861 2.0654 2.8502 11 6 8.1654 0.1340 1.6240 12 1 7.6373 -0.8169 1.5540 13 6 8.7227 0.4997 0.2724 14 1 9.2016 1.4567 0.1268 15 6 8.6212 -0.3875 -0.7781 16 7 8.9699 -0.0142 -1.9900 17 14 7.9884 -2.1195 -0.4801 18 1 6.5035 -2.1125 -0.4899 19 1 8.4863 -3.0196 -1.5512 20 1 8.4724 -2.6035 0.8378 21 6 9.2934 0.0104 2.6157 22 6 10.2012 1.0424 2.7621 23 6 11.2333 0.9307 3.6750 24 6 11.3629 -0.2167 4.4348 25 6 10.4580 -1.2509 4.2847 26 6 9.4233 -1.1374 3.3751 27 6 4.3941 1.8510 3.3926 28 8 4.6992 0.8006 3.9059 29 8 3.5105 2.6612 3.9961 30 1 -0.5400 -0.9354 0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3855 2.1161 0.2660 34 1 2.4756 1.4868 -0.9926 35 1 3.2689 3.2696 1.3192 36 1 4.3587 2.6396 0.0608 37 1 5.6386 0.5251 1.0179 38 1 8.8982 -0.6382 -2.7292 39 1 10.1025 1.9372 2.1655 40 1 11.9401 1.7389 3.7925 41 1 12.1707 -0.3051 5.1461 42 1 10.5590 -2.1473 4.8787 43 1 8.7166 -1.9457 3.2575 44 1 3.1452 2.3617 4.8398 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573368461.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:20 Heat of formation + Delta-G solvation = -125.596369 kcal Electronic energy + Delta-G solvation = -29003.342716 eV Core-core repulsion = 24886.461442 eV Total energy + Delta-G solvation = -4116.881274 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.42212 -39.14280 -38.30620 -37.76760 -35.92403 -34.77204 -33.63522 -33.56162 -31.56644 -30.10280 -29.94179 -27.63166 -26.17361 -24.39077 -23.65700 -21.85826 -21.71170 -20.50259 -20.14850 -19.46451 -18.01166 -17.31508 -17.09093 -16.57004 -16.50592 -16.21278 -16.01152 -15.34974 -15.26024 -14.76532 -14.61481 -14.22588 -13.95717 -13.62878 -13.46298 -13.02066 -12.93581 -12.75347 -12.59437 -12.51418 -12.25635 -12.03991 -11.81993 -11.76825 -11.30276 -11.16664 -11.15313 -11.03821 -10.49161 -10.45258 -10.16036 -10.06417 -10.00405 -9.54328 -9.51353 -9.11191 -8.77289 -8.69070 -8.10222 -7.80135 -6.33049 -4.35343 1.93673 2.17052 2.24023 2.43969 2.91208 3.12961 3.24469 3.27985 3.51899 3.58174 3.85116 4.20438 4.59098 4.64933 4.85887 4.91638 5.02694 5.12941 5.17290 5.23136 5.30351 5.35807 5.58125 5.59168 5.62037 5.65065 5.74531 5.98513 6.09706 6.21556 6.35565 6.37366 6.41667 6.43517 6.63166 6.76002 6.80168 6.89395 6.96205 7.20253 7.26604 7.29071 7.61583 7.81873 8.05352 8.07801 8.26240 8.70058 9.00258 9.25202 10.77900 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.010719 B = 0.004361 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.499544 B = 6418.915256 C = 7898.363246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.148 4.148 3 C 0.089 3.911 4 O -0.383 6.383 5 C 0.059 3.941 6 C 0.165 3.835 7 H 0.137 0.863 8 N -0.709 5.709 9 C 0.542 3.458 10 O -0.555 6.555 11 C 0.036 3.964 12 H 0.061 0.939 13 C -0.507 4.507 14 H 0.085 0.915 15 C 0.085 3.915 16 N -0.879 5.879 17 Si 0.863 3.137 18 H -0.269 1.269 19 H -0.283 1.283 20 H -0.259 1.259 21 C -0.032 4.032 22 C -0.070 4.070 23 C -0.132 4.132 24 C -0.142 4.142 25 C -0.131 4.131 26 C -0.131 4.131 27 C 0.472 3.528 28 O -0.498 6.498 29 O -0.521 6.521 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.411 0.589 38 H 0.269 0.731 39 H 0.121 0.879 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.829 2.807 5.226 14.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.166 4.166 3 C 0.013 3.987 4 O -0.303 6.303 5 C -0.018 4.018 6 C 0.057 3.943 7 H 0.154 0.846 8 N -0.363 5.363 9 C 0.332 3.668 10 O -0.433 6.433 11 C 0.014 3.986 12 H 0.079 0.921 13 C -0.544 4.544 14 H 0.103 0.897 15 C -0.120 4.120 16 N -0.514 5.514 17 Si 0.689 3.311 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.184 1.184 21 C -0.033 4.033 22 C -0.088 4.088 23 C -0.150 4.150 24 C -0.160 4.160 25 C -0.149 4.149 26 C -0.149 4.149 27 C 0.311 3.689 28 O -0.383 6.383 29 O -0.332 6.332 30 H 0.121 0.879 31 H 0.115 0.885 32 H 0.136 0.864 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.247 0.753 38 H 0.079 0.921 39 H 0.139 0.861 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -12.229 3.035 5.434 13.722 hybrid contribution -0.753 -1.383 0.106 1.579 sum -12.982 1.652 5.540 14.211 Atomic orbital electron populations 1.23805 0.95513 1.02146 1.00677 1.22794 0.95658 0.98449 0.99661 1.21560 0.88621 0.95849 0.92643 1.87949 1.44821 1.36697 1.60784 1.22775 0.91847 0.88349 0.98862 1.20364 0.90454 0.95658 0.87830 0.84568 1.45739 1.09933 1.31029 1.49605 1.21610 0.81023 0.87010 0.77144 1.90572 1.77047 1.39971 1.35695 1.18297 0.90535 0.94047 0.95697 0.92060 1.20528 1.39253 1.05207 0.89430 0.89686 1.25022 0.94199 0.98123 0.94696 1.69866 1.46371 1.35809 0.99400 0.87043 0.79824 0.85197 0.79031 1.19461 1.20905 1.18378 1.19954 0.96679 0.93227 0.93436 1.20915 0.92942 0.98571 0.96359 1.21046 0.98749 0.97641 0.97597 1.20876 0.99657 0.94647 1.00789 1.20885 0.96076 0.98563 0.99400 1.21024 0.98813 0.98060 0.96980 1.24027 0.75870 0.81808 0.87190 1.90705 1.58607 1.24272 1.64736 1.84495 1.56717 1.52032 1.39992 0.87877 0.88490 0.86412 0.92600 0.91711 0.90584 0.90228 0.75272 0.92053 0.86098 0.87089 0.87338 0.87242 0.87195 0.73694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 14.31 29.01 0.42 -1.15 16 2 C -0.15 -1.53 9.89 -36.03 -0.36 -1.89 16 3 C 0.09 0.92 6.35 36.01 0.23 1.15 16 4 O -0.38 -5.07 9.54 -35.23 -0.34 -5.41 16 5 C 0.06 0.70 5.62 37.16 0.21 0.91 16 6 C 0.17 2.55 2.89 -69.09 -0.20 2.35 16 7 H 0.14 2.03 7.58 -51.93 -0.39 1.64 16 8 N -0.71 -13.41 4.59 -54.94 -0.25 -13.66 16 9 C 0.54 12.10 6.77 -10.99 -0.07 12.02 16 10 O -0.56 -13.27 14.86 5.56 0.08 -13.19 16 11 C 0.04 0.84 2.20 -94.07 -0.21 0.64 16 12 H 0.06 1.41 4.73 -51.93 -0.25 1.16 16 13 C -0.51 -13.19 8.24 -34.44 -0.28 -13.47 16 14 H 0.09 2.44 7.72 -52.49 -0.40 2.03 16 15 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 16 N -0.88 -24.59 13.96 55.43 0.77 -23.82 16 17 Si 0.86 19.75 26.84 -169.99 -4.56 15.19 16 18 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 20 H -0.26 -5.84 6.97 56.52 0.39 -5.45 16 21 C -0.03 -0.73 4.52 -104.62 -0.47 -1.21 16 22 C -0.07 -1.54 8.04 -39.58 -0.32 -1.86 16 23 C -0.13 -2.52 10.05 -39.58 -0.40 -2.92 16 24 C -0.14 -2.51 10.05 -39.59 -0.40 -2.91 16 25 C -0.13 -2.42 10.05 -39.58 -0.40 -2.81 16 26 C -0.13 -2.74 9.67 -39.58 -0.38 -3.12 16 27 C 0.47 7.64 7.17 36.00 0.26 7.90 16 28 O -0.50 -9.93 17.08 -18.75 -0.32 -10.25 16 29 O -0.52 -6.30 13.35 -39.24 -0.52 -6.82 16 30 H 0.10 0.76 8.06 -52.48 -0.42 0.33 16 31 H 0.10 0.69 7.90 -52.49 -0.41 0.28 16 32 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.06 0.48 7.86 -51.93 -0.41 0.07 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.41 7.60 8.38 -40.82 -0.34 7.26 16 38 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.12 2.76 7.46 -52.49 -0.39 2.37 16 40 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 41 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 42 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 43 H 0.11 2.18 7.96 -52.48 -0.42 1.76 16 44 H 0.40 3.29 9.10 45.56 0.41 3.70 16 LS Contribution 384.39 15.07 5.79 5.79 Total: -1.00 -33.52 384.39 -6.95 -40.47 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -5.13 Total: 15.93 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -2.47 Total: -4.23 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.52 Total: -37.48 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -1.10 Total: -35.68 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.56 Total: 15.19 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.52 -6.95 -40.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573368461.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.125 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds