Wall clock time and date at job start Tue Mar 31 2020 17:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50700 * 119.99668 * 2 1 4 4 O 1.42905 * 109.46814 * 135.00033 * 3 2 1 5 5 C 1.42902 * 113.99839 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47090 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.46781 * 184.99884 * 6 5 4 8 8 N 1.46500 * 109.46749 * 65.00176 * 6 5 4 9 9 C 1.34775 * 119.99907 * 155.00061 * 8 6 5 10 10 O 1.21280 * 120.00226 * 359.97438 * 9 8 6 11 11 C 1.50700 * 120.00152 * 179.97438 * 9 8 6 12 12 H 1.08998 * 109.47435 * 321.82432 * 11 9 8 13 13 C 1.50700 * 109.47206 * 81.82437 * 11 9 8 14 14 H 1.08000 * 119.99803 * 54.38153 * 13 11 9 15 15 C 1.37877 * 119.99951 * 234.38283 * 13 11 9 16 16 N 1.31516 * 119.99786 * 172.37670 * 15 13 11 17 17 Si 1.86795 * 120.00260 * 352.37618 * 15 13 11 18 18 H 1.48498 * 109.47133 * 83.59799 * 17 15 13 19 19 H 1.48499 * 109.47180 * 203.60191 * 17 15 13 20 20 H 1.48507 * 109.47066 * 323.59946 * 17 15 13 21 21 C 1.50703 * 109.47194 * 201.82274 * 11 9 8 22 22 C 1.38230 * 120.00007 * 292.61768 * 21 11 9 23 23 C 1.38244 * 119.99711 * 179.78760 * 22 21 11 24 24 C 1.38231 * 119.99975 * 0.44358 * 23 22 21 25 25 C 1.38234 * 120.00046 * 359.80860 * 24 23 22 26 26 C 1.38234 * 119.99998 * 359.97438 * 25 24 23 27 27 C 1.50695 * 109.47054 * 305.00213 * 6 5 4 28 28 O 1.20826 * 120.00086 * 120.00240 * 27 6 5 29 29 O 1.34224 * 120.00066 * 299.72300 * 27 6 5 30 30 H 1.08003 * 119.99628 * 180.02562 * 1 2 3 31 31 H 1.08001 * 119.99949 * 359.97438 * 1 2 3 32 32 H 1.07996 * 119.99646 * 179.97438 * 2 1 3 33 33 H 1.08995 * 109.47534 * 14.99980 * 3 2 1 34 34 H 1.09001 * 109.47039 * 254.99603 * 3 2 1 35 35 H 1.08998 * 109.46974 * 59.99659 * 5 4 3 36 36 H 1.09002 * 109.46826 * 300.00123 * 5 4 3 37 37 H 0.96996 * 120.00291 * 334.99467 * 8 6 5 38 38 H 0.97000 * 120.00073 * 180.02562 * 16 15 13 39 39 H 1.07993 * 120.00261 * 359.97438 * 22 21 11 40 40 H 1.08000 * 119.99397 * 180.27231 * 23 22 21 41 41 H 1.07997 * 120.00036 * 179.83506 * 24 23 22 42 42 H 1.07999 * 119.99919 * 180.02562 * 25 24 23 43 43 H 1.08004 * 119.99868 * 179.97438 * 26 25 24 44 44 H 0.96694 * 117.00276 * 180.27940 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9084 2.4350 1.0321 6 6 5.0105 2.2542 2.0779 7 1 5.5505 3.1928 2.2024 8 7 5.9389 1.2117 1.6336 9 6 7.2104 1.2067 2.0805 10 8 7.5861 2.0654 2.8502 11 6 8.1654 0.1340 1.6240 12 1 7.6373 -0.8169 1.5540 13 6 8.7227 0.4997 0.2724 14 1 9.2016 1.4567 0.1268 15 6 8.6212 -0.3875 -0.7781 16 7 8.9699 -0.0142 -1.9900 17 14 7.9884 -2.1195 -0.4801 18 1 6.5035 -2.1125 -0.4899 19 1 8.4863 -3.0196 -1.5512 20 1 8.4724 -2.6035 0.8378 21 6 9.2934 0.0104 2.6157 22 6 10.2012 1.0424 2.7621 23 6 11.2333 0.9307 3.6750 24 6 11.3629 -0.2167 4.4348 25 6 10.4580 -1.2509 4.2847 26 6 9.4233 -1.1374 3.3751 27 6 4.3941 1.8510 3.3926 28 8 4.6992 0.8006 3.9059 29 8 3.5105 2.6612 3.9961 30 1 -0.5400 -0.9354 0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3855 2.1161 0.2660 34 1 2.4756 1.4868 -0.9926 35 1 3.2689 3.2696 1.3192 36 1 4.3587 2.6396 0.0608 37 1 5.6386 0.5251 1.0179 38 1 8.8982 -0.6382 -2.7292 39 1 10.1025 1.9372 2.1655 40 1 11.9401 1.7389 3.7925 41 1 12.1707 -0.3051 5.1461 42 1 10.5590 -2.1473 4.8787 43 1 8.7166 -1.9457 3.2575 44 1 3.1452 2.3617 4.8398 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573368461.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:19 Heat of formation + Delta-G solvation = -149.130648 kcal Electronic energy + Delta-G solvation = -29004.363239 eV Core-core repulsion = 24886.461442 eV Total energy + Delta-G solvation = -4117.901797 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.76747 -40.70501 -39.49907 -39.07415 -37.14102 -36.00457 -35.52831 -34.55101 -33.41508 -31.63787 -31.24602 -29.30482 -27.03512 -25.61969 -25.35451 -23.40237 -23.16274 -21.84673 -21.18266 -20.83568 -19.26218 -19.10379 -18.41131 -18.02822 -17.84554 -17.44972 -17.17630 -16.63907 -16.48477 -16.34886 -15.77944 -15.76854 -15.40767 -15.16073 -14.84039 -14.55629 -14.34337 -14.18601 -14.01879 -13.77274 -13.56995 -13.36813 -13.16019 -12.95453 -12.83632 -12.77628 -12.52668 -12.09713 -11.93084 -11.92139 -11.76949 -11.72755 -11.44358 -10.99876 -10.91349 -10.64445 -10.28309 -10.26273 -9.65191 -9.39362 -8.37893 -6.44450 0.61986 0.69013 1.17992 1.21787 1.30935 1.36613 1.44678 1.58539 1.98080 2.27439 2.41306 2.64470 2.96697 3.14126 3.58765 3.97324 4.04672 4.10535 4.16446 4.20260 4.21634 4.29490 4.33895 4.40356 4.43891 4.45856 4.48331 4.59814 4.61473 4.82142 4.87857 4.97384 5.18397 5.30089 5.33095 5.38315 5.56158 5.65368 5.68645 5.69798 5.73497 5.93929 6.10667 6.17429 6.28882 6.50240 6.58065 6.94138 7.18992 7.29510 8.76734 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.010719 B = 0.004361 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.499544 B = 6418.915256 C = 7898.363246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.179 4.179 3 C 0.086 3.914 4 O -0.408 6.408 5 C 0.066 3.934 6 C 0.155 3.845 7 H 0.140 0.860 8 N -0.705 5.705 9 C 0.539 3.461 10 O -0.578 6.578 11 C 0.036 3.964 12 H 0.064 0.936 13 C -0.502 4.502 14 H 0.041 0.959 15 C 0.041 3.959 16 N -0.923 5.923 17 Si 0.917 3.083 18 H -0.249 1.249 19 H -0.282 1.282 20 H -0.253 1.253 21 C -0.064 4.064 22 C -0.098 4.098 23 C -0.134 4.134 24 C -0.133 4.133 25 C -0.126 4.126 26 C -0.150 4.150 27 C 0.479 3.521 28 O -0.542 6.542 29 O -0.503 6.503 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.110 0.890 36 H 0.086 0.914 37 H 0.412 0.588 38 H 0.272 0.728 39 H 0.094 0.906 40 H 0.137 0.863 41 H 0.152 0.848 42 H 0.148 0.852 43 H 0.116 0.884 44 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.128 2.075 6.942 15.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.197 4.197 3 C 0.011 3.989 4 O -0.328 6.328 5 C -0.011 4.011 6 C 0.048 3.952 7 H 0.157 0.843 8 N -0.356 5.356 9 C 0.328 3.672 10 O -0.458 6.458 11 C 0.015 3.985 12 H 0.082 0.918 13 C -0.540 4.540 14 H 0.060 0.940 15 C -0.160 4.160 16 N -0.561 5.561 17 Si 0.740 3.260 18 H -0.173 1.173 19 H -0.208 1.208 20 H -0.177 1.177 21 C -0.065 4.065 22 C -0.116 4.116 23 C -0.152 4.152 24 C -0.151 4.151 25 C -0.144 4.144 26 C -0.168 4.168 27 C 0.320 3.680 28 O -0.432 6.432 29 O -0.315 6.315 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.119 0.881 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.128 0.872 36 H 0.104 0.896 37 H 0.248 0.752 38 H 0.082 0.918 39 H 0.113 0.887 40 H 0.155 0.845 41 H 0.170 0.830 42 H 0.165 0.835 43 H 0.134 0.866 44 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -13.587 2.331 7.163 15.535 hybrid contribution -0.394 -1.044 -0.337 1.165 sum -13.981 1.287 6.826 15.611 Atomic orbital electron populations 1.24040 0.94842 1.03505 0.97765 1.22808 0.96471 0.98013 1.02429 1.21725 0.88276 0.96570 0.92307 1.87916 1.45771 1.37392 1.61768 1.22797 0.91287 0.89052 0.97957 1.20698 0.91044 0.94363 0.89086 0.84255 1.45626 1.09522 1.31652 1.48850 1.21362 0.82119 0.86467 0.77204 1.90538 1.77774 1.40602 1.36855 1.18234 0.91290 0.94389 0.94625 0.91824 1.20425 1.38799 1.03528 0.91207 0.94028 1.25696 0.94435 1.01767 0.94146 1.69982 1.48382 1.37310 1.00380 0.86164 0.80476 0.80328 0.79019 1.17336 1.20781 1.17662 1.20029 0.96961 0.94667 0.94851 1.20882 0.94843 0.97956 0.97968 1.21387 0.97999 0.99256 0.96536 1.21371 1.00113 0.93278 1.00309 1.21347 0.94681 1.00050 0.98321 1.21250 1.00247 0.97506 0.97806 1.23998 0.75716 0.81252 0.87070 1.90692 1.60369 1.26222 1.65874 1.84430 1.55391 1.50655 1.41060 0.86880 0.86713 0.88067 0.90363 0.91342 0.87197 0.89589 0.75182 0.91838 0.88742 0.84479 0.83002 0.83451 0.86575 0.71319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 14.31 67.77 0.97 -1.46 16 2 C -0.18 -3.52 9.89 25.64 0.25 -3.27 16 3 C 0.09 1.65 6.35 71.24 0.45 2.11 16 4 O -0.41 -10.36 9.54 -148.98 -1.42 -11.78 16 5 C 0.07 1.47 5.62 71.98 0.40 1.88 16 6 C 0.16 4.76 2.89 44.24 0.13 4.89 16 7 H 0.14 4.17 7.58 -2.39 -0.02 4.15 16 8 N -0.70 -27.26 4.59 -446.11 -2.05 -29.30 16 9 C 0.54 24.99 6.77 87.66 0.59 25.59 16 10 O -0.58 -28.77 14.86 -3.03 -0.05 -28.82 16 11 C 0.04 1.76 2.20 -13.03 -0.03 1.73 16 12 H 0.06 2.98 4.73 -2.39 -0.01 2.97 16 13 C -0.50 -27.53 8.24 25.60 0.21 -27.32 16 14 H 0.04 2.58 7.72 -2.91 -0.02 2.56 16 15 C 0.04 2.21 5.47 84.65 0.46 2.67 16 16 N -0.92 -53.63 13.96 21.45 0.30 -53.33 16 17 Si 0.92 41.10 26.84 68.60 1.84 42.94 16 18 H -0.25 -10.29 7.11 99.48 0.71 -9.59 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 20 H -0.25 -10.98 6.97 99.48 0.69 -10.28 16 21 C -0.06 -3.02 4.52 -19.87 -0.09 -3.11 16 22 C -0.10 -4.49 8.04 22.27 0.18 -4.31 16 23 C -0.13 -4.96 10.05 22.27 0.22 -4.74 16 24 C -0.13 -4.28 10.05 22.27 0.22 -4.06 16 25 C -0.13 -4.28 10.05 22.27 0.22 -4.06 16 26 C -0.15 -6.18 9.67 22.27 0.22 -5.96 16 27 C 0.48 15.14 7.17 71.23 0.51 15.65 16 28 O -0.54 -21.67 17.08 21.96 0.38 -21.29 16 29 O -0.50 -11.10 13.35 -51.36 -0.69 -11.79 16 30 H 0.11 1.41 8.06 -2.91 -0.02 1.39 16 31 H 0.11 1.27 7.90 -2.91 -0.02 1.25 16 32 H 0.10 2.27 8.06 -2.91 -0.02 2.25 16 33 H 0.08 1.11 7.86 -2.39 -0.02 1.10 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.41 15.59 8.38 -92.71 -0.78 14.82 16 38 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 39 H 0.09 4.68 7.46 -2.91 -0.02 4.65 16 40 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 41 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 42 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 43 H 0.12 4.50 7.96 -2.91 -0.02 4.48 16 44 H 0.43 5.91 9.10 -74.06 -0.67 5.24 16 Total: -1.00 -76.54 384.39 2.82 -73.72 By element: Atomic # 1 Polarization: 43.86 SS G_CDS: -0.43 Total: 43.44 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: 4.93 Total: -3.78 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -1.75 Total: -82.64 kcal Atomic # 8 Polarization: -71.90 SS G_CDS: -1.78 Total: -73.67 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 1.84 Total: 42.94 kcal Total: -76.54 2.82 -73.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573368461.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.415 kcal (2) G-P(sol) polarization free energy of solvation -76.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds