Wall clock time and date at job start Tue Mar 31 2020 17:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50703 * 120.00244 * 2 1 4 4 O 1.42904 * 109.46858 * 134.99878 * 3 2 1 5 5 C 1.42898 * 113.99632 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47141 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.47284 * 185.00008 * 6 5 4 8 8 N 1.46502 * 109.47177 * 64.99757 * 6 5 4 9 9 C 1.34775 * 119.99785 * 155.00387 * 8 6 5 10 10 O 1.21282 * 120.00086 * 359.97438 * 9 8 6 11 11 C 1.50695 * 119.99948 * 180.02562 * 9 8 6 12 12 H 1.08994 * 109.47660 * 59.99536 * 11 9 8 13 13 C 1.50702 * 109.46830 * 299.99738 * 11 9 8 14 14 H 1.08001 * 119.99970 * 325.09567 * 13 11 9 15 15 C 1.37882 * 120.00096 * 145.10150 * 13 11 9 16 16 N 1.31505 * 119.99937 * 184.98259 * 15 13 11 17 17 Si 1.86798 * 119.99744 * 4.97761 * 15 13 11 18 18 H 1.48499 * 109.47101 * 84.67463 * 17 15 13 19 19 H 1.48499 * 109.47232 * 204.67174 * 17 15 13 20 20 H 1.48498 * 109.47455 * 324.67246 * 17 15 13 21 21 C 1.50698 * 109.47324 * 179.97438 * 11 9 8 22 22 C 1.38234 * 120.00263 * 65.01948 * 21 11 9 23 23 C 1.38234 * 120.00273 * 179.81422 * 22 21 11 24 24 C 1.38243 * 119.99882 * 0.39372 * 23 22 21 25 25 C 1.38233 * 119.99574 * 359.85872 * 24 23 22 26 26 C 1.38230 * 120.00415 * 359.95580 * 25 24 23 27 27 C 1.50696 * 109.46866 * 304.99754 * 6 5 4 28 28 O 1.20830 * 120.00182 * 120.00249 * 27 6 5 29 29 O 1.34236 * 120.00198 * 299.72612 * 27 6 5 30 30 H 1.08003 * 120.00510 * 179.97438 * 1 2 3 31 31 H 1.08006 * 119.99927 * 359.97438 * 1 2 3 32 32 H 1.08006 * 119.99927 * 180.02562 * 2 1 3 33 33 H 1.08994 * 109.46987 * 15.00327 * 3 2 1 34 34 H 1.08995 * 109.47060 * 254.99807 * 3 2 1 35 35 H 1.08994 * 109.47143 * 59.99863 * 5 4 3 36 36 H 1.09007 * 109.47431 * 300.00200 * 5 4 3 37 37 H 0.96996 * 119.99932 * 335.00154 * 8 6 5 38 38 H 0.97009 * 120.00112 * 179.97438 * 16 15 13 39 39 H 1.07997 * 119.99916 * 359.97438 * 22 21 11 40 40 H 1.08000 * 120.00356 * 180.22489 * 23 22 21 41 41 H 1.07994 * 119.99572 * 179.83787 * 24 23 22 42 42 H 1.08004 * 119.99901 * 179.97438 * 25 24 23 43 43 H 1.08008 * 120.00185 * 180.02562 * 26 25 24 44 44 H 0.96698 * 116.99796 * 180.27485 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9077 2.4351 1.0329 6 6 5.0106 2.2539 2.0777 7 1 5.5503 3.1926 2.2030 8 7 5.9394 1.2124 1.6318 9 6 7.2112 1.2076 2.0779 10 8 7.5868 2.0658 2.8482 11 6 8.1667 0.1366 1.6188 12 1 8.2682 0.1807 0.5345 13 6 7.6354 -1.2157 2.0189 14 1 7.0959 -1.3308 2.9474 15 6 7.8382 -2.3061 1.1997 16 7 7.2918 -3.4641 1.4992 17 14 8.8890 -2.1381 -0.3356 18 1 10.3197 -2.3116 0.0224 19 1 8.4958 -3.1774 -1.3207 20 1 8.6869 -0.7920 -0.9290 21 6 9.5134 0.3571 2.2582 22 6 9.6550 0.2424 3.6285 23 6 10.8910 0.4408 4.2147 24 6 11.9839 0.7620 3.4314 25 6 11.8412 0.8819 2.0617 26 6 10.6059 0.6796 1.4751 27 6 4.3954 1.8489 3.3924 28 8 4.7014 0.7981 3.9045 29 8 3.5116 2.6581 3.9975 30 1 -0.5401 -0.9353 -0.0004 31 1 -0.5400 0.9354 0.0004 32 1 1.8499 -0.9354 -0.0004 33 1 1.3856 2.1160 0.2660 34 1 2.4755 1.4867 -0.9926 35 1 3.2678 3.2693 1.3205 36 1 4.3580 2.6408 0.0617 37 1 5.6391 0.5263 1.0154 38 1 7.4342 -4.2312 0.9226 39 1 8.8004 -0.0048 4.2409 40 1 11.0024 0.3477 5.2849 41 1 12.9490 0.9196 3.8897 42 1 12.6949 1.1332 1.4497 43 1 10.4945 0.7729 0.4049 44 1 3.1470 2.3573 4.8411 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573368464.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:22 Heat of formation + Delta-G solvation = -147.474088 kcal Electronic energy + Delta-G solvation = -29061.993464 eV Core-core repulsion = 24944.163501 eV Total energy + Delta-G solvation = -4117.829963 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.74400 -40.69812 -39.48484 -39.04886 -37.11958 -35.97499 -35.53499 -34.52636 -33.37294 -31.63442 -31.22198 -29.23493 -27.00068 -25.61958 -25.31682 -23.43886 -23.11999 -21.82198 -21.11891 -20.81397 -19.19653 -19.08254 -18.41641 -17.97850 -17.83439 -17.43516 -17.14306 -16.63295 -16.43666 -16.31928 -15.86920 -15.70685 -15.39835 -15.10864 -14.86418 -14.49260 -14.29858 -14.13416 -14.03713 -13.80745 -13.51861 -13.42893 -13.11864 -12.96729 -12.78940 -12.70818 -12.50833 -12.03646 -11.96329 -11.90217 -11.72858 -11.62409 -11.43070 -10.96488 -10.88512 -10.60649 -10.24200 -10.22558 -9.65189 -9.38524 -8.32427 -6.41706 0.63386 0.69419 1.22897 1.23299 1.31213 1.40390 1.45057 1.52887 2.16828 2.30818 2.36272 2.69827 2.96967 3.14579 3.62706 3.99672 4.09265 4.12407 4.17529 4.21013 4.23325 4.31734 4.36911 4.38858 4.46379 4.48922 4.57168 4.61862 4.63026 4.81186 4.89941 4.98271 5.18576 5.30656 5.35711 5.42487 5.59717 5.66447 5.69159 5.72441 5.73413 5.95053 6.18114 6.21280 6.30046 6.54234 6.62514 6.96907 7.22088 7.31773 8.83170 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011769 B = 0.004190 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.624725 B = 6680.856597 C = 8047.153727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.181 4.181 3 C 0.090 3.910 4 O -0.413 6.413 5 C 0.066 3.934 6 C 0.157 3.843 7 H 0.149 0.851 8 N -0.698 5.698 9 C 0.540 3.460 10 O -0.579 6.579 11 C 0.024 3.976 12 H 0.088 0.912 13 C -0.498 4.498 14 H 0.024 0.976 15 C 0.030 3.970 16 N -0.935 5.935 17 Si 0.929 3.071 18 H -0.266 1.266 19 H -0.283 1.283 20 H -0.225 1.225 21 C -0.056 4.056 22 C -0.106 4.106 23 C -0.135 4.135 24 C -0.135 4.135 25 C -0.122 4.122 26 C -0.148 4.148 27 C 0.468 3.532 28 O -0.545 6.545 29 O -0.505 6.505 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.416 0.584 38 H 0.269 0.731 39 H 0.078 0.922 40 H 0.130 0.870 41 H 0.151 0.849 42 H 0.153 0.847 43 H 0.128 0.872 44 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.570 14.823 -6.371 17.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.199 4.199 3 C 0.014 3.986 4 O -0.334 6.334 5 C -0.010 4.010 6 C 0.049 3.951 7 H 0.166 0.834 8 N -0.350 5.350 9 C 0.329 3.671 10 O -0.459 6.459 11 C 0.003 3.997 12 H 0.105 0.895 13 C -0.535 4.535 14 H 0.042 0.958 15 C -0.169 4.169 16 N -0.573 5.573 17 Si 0.752 3.248 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.149 1.149 21 C -0.057 4.057 22 C -0.125 4.125 23 C -0.153 4.153 24 C -0.152 4.152 25 C -0.140 4.140 26 C -0.167 4.167 27 C 0.309 3.691 28 O -0.434 6.434 29 O -0.317 6.317 30 H 0.127 0.873 31 H 0.136 0.864 32 H 0.112 0.888 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.127 0.873 36 H 0.118 0.882 37 H 0.252 0.748 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.148 0.852 41 H 0.169 0.831 42 H 0.170 0.830 43 H 0.146 0.854 44 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -6.084 14.926 -5.997 17.198 hybrid contribution -0.428 -1.433 0.322 1.530 sum -6.512 13.493 -5.675 16.021 Atomic orbital electron populations 1.24022 0.94857 1.03438 0.98003 1.22853 0.96565 0.98295 1.02210 1.21704 0.88283 0.96018 0.92545 1.88000 1.45893 1.37552 1.61932 1.22852 0.91196 0.88819 0.98167 1.20828 0.91275 0.94343 0.88625 0.83381 1.45619 1.09341 1.31364 1.48692 1.21107 0.83067 0.84191 0.78698 1.90558 1.78638 1.40330 1.36394 1.18479 0.89493 0.93029 0.98735 0.89461 1.20396 1.35500 0.91099 1.06528 0.95780 1.25837 0.95707 0.94300 1.01096 1.70042 1.44600 1.02152 1.40461 0.86011 0.79794 0.79923 0.79075 1.19081 1.20878 1.14866 1.20072 0.95816 0.95703 0.94111 1.20780 0.97050 0.99571 0.95050 1.21327 0.92687 1.00696 1.00563 1.21350 0.98947 1.00927 0.94024 1.21393 0.97133 0.99931 0.95514 1.21264 0.93357 1.02054 0.99977 1.24384 0.75864 0.81274 0.87625 1.90800 1.60201 1.26392 1.65982 1.84421 1.55628 1.50738 1.40952 0.87324 0.86363 0.88758 0.90355 0.90484 0.87315 0.88212 0.74782 0.92134 0.90403 0.85159 0.83090 0.82972 0.85432 0.71682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.81 14.31 67.79 0.97 -1.84 16 2 C -0.18 -3.98 9.89 25.65 0.25 -3.72 16 3 C 0.09 1.71 6.35 71.24 0.45 2.17 16 4 O -0.41 -10.92 9.54 -148.98 -1.42 -12.34 16 5 C 0.07 1.36 5.62 71.98 0.40 1.76 16 6 C 0.16 4.73 2.89 44.24 0.13 4.85 16 7 H 0.15 4.02 7.58 -2.39 -0.02 4.00 16 8 N -0.70 -26.90 4.49 -446.10 -2.00 -28.90 16 9 C 0.54 24.60 6.87 87.66 0.60 25.20 16 10 O -0.58 -28.14 15.04 -3.04 -0.05 -28.18 16 11 C 0.02 1.14 1.89 -13.03 -0.02 1.11 16 12 H 0.09 3.82 4.89 -2.39 -0.01 3.80 16 13 C -0.50 -28.37 8.07 25.60 0.21 -28.16 16 14 H 0.02 1.63 8.06 -2.91 -0.02 1.60 16 15 C 0.03 1.71 5.47 84.66 0.46 2.17 16 16 N -0.93 -57.54 13.96 21.45 0.30 -57.24 16 17 Si 0.93 41.48 27.18 68.60 1.86 43.34 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.23 -8.64 6.06 99.48 0.60 -8.04 16 21 C -0.06 -2.58 4.09 -19.87 -0.08 -2.66 16 22 C -0.11 -5.01 8.25 22.27 0.18 -4.83 16 23 C -0.13 -5.17 10.05 22.27 0.22 -4.94 16 24 C -0.13 -4.32 10.05 22.27 0.22 -4.10 16 25 C -0.12 -3.94 10.05 22.27 0.22 -3.71 16 26 C -0.15 -5.72 9.46 22.27 0.21 -5.51 16 27 C 0.47 16.47 7.17 71.23 0.51 16.98 16 28 O -0.54 -25.84 17.08 21.95 0.37 -25.46 16 29 O -0.50 -12.62 13.36 -51.48 -0.69 -13.31 16 30 H 0.11 1.68 8.06 -2.91 -0.02 1.65 16 31 H 0.12 1.45 7.90 -2.91 -0.02 1.43 16 32 H 0.09 2.51 8.06 -2.91 -0.02 2.49 16 33 H 0.08 1.10 7.86 -2.39 -0.02 1.08 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.42 16.16 8.27 -92.71 -0.77 15.40 16 38 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 39 H 0.08 4.16 7.93 -2.91 -0.02 4.14 16 40 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 41 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 42 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 43 H 0.13 4.32 7.95 -2.91 -0.02 4.29 16 44 H 0.42 7.56 9.10 -74.06 -0.67 6.89 16 Total: -1.00 -83.94 383.93 2.82 -81.12 By element: Atomic # 1 Polarization: 46.72 SS G_CDS: -0.51 Total: 46.21 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 4.95 Total: -5.24 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -1.70 Total: -86.14 kcal Atomic # 8 Polarization: -77.51 SS G_CDS: -1.78 Total: -79.29 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 1.86 Total: 43.34 kcal Total: -83.94 2.82 -81.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573368464.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.352 kcal (2) G-P(sol) polarization free energy of solvation -83.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds