Wall clock time and date at job start Tue Mar 31 2020 17:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 120.00028 * 2 1 4 4 O 1.42894 * 109.47203 * 135.00391 * 3 2 1 5 5 C 1.42904 * 114.00326 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47324 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47238 * 174.99854 * 6 5 4 8 8 N 1.46499 * 109.47204 * 295.00055 * 6 5 4 9 9 C 1.34779 * 119.99799 * 204.72371 * 8 6 5 10 10 O 1.21283 * 119.99926 * 0.02562 * 9 8 6 11 11 C 1.50701 * 119.99863 * 180.02562 * 9 8 6 12 12 H 1.08995 * 109.47238 * 59.99363 * 11 9 8 13 13 C 1.50704 * 109.46801 * 299.99650 * 11 9 8 14 14 H 1.08004 * 120.00120 * 324.88393 * 13 11 9 15 15 C 1.37879 * 119.99949 * 144.87996 * 13 11 9 16 16 N 1.31515 * 119.99868 * 5.19483 * 15 13 11 17 17 Si 1.86796 * 120.00098 * 185.19266 * 15 13 11 18 18 H 1.48499 * 109.46982 * 90.00305 * 17 15 13 19 19 H 1.48503 * 109.47142 * 210.00050 * 17 15 13 20 20 H 1.48504 * 109.47266 * 330.00424 * 17 15 13 21 21 C 1.50695 * 109.47322 * 180.02562 * 11 9 8 22 22 C 1.38240 * 120.00041 * 66.00545 * 21 11 9 23 23 C 1.38231 * 119.99940 * 179.79062 * 22 21 11 24 24 C 1.38235 * 120.00116 * 0.44293 * 23 22 21 25 25 C 1.38237 * 120.00107 * 359.81380 * 24 23 22 26 26 C 1.38235 * 120.00105 * 246.28414 * 21 11 9 27 27 C 1.50705 * 109.46868 * 55.00218 * 6 5 4 28 28 O 1.20824 * 119.99736 * 239.99750 * 27 6 5 29 29 O 1.34230 * 120.00100 * 60.00221 * 27 6 5 30 30 H 1.07996 * 119.99951 * 359.97438 * 1 2 3 31 31 H 1.08005 * 120.00098 * 180.02562 * 1 2 3 32 32 H 1.08006 * 119.99867 * 180.02562 * 2 1 3 33 33 H 1.08999 * 109.47265 * 14.99929 * 3 2 1 34 34 H 1.09007 * 109.46977 * 254.99964 * 3 2 1 35 35 H 1.09006 * 109.46948 * 60.00036 * 5 4 3 36 36 H 1.08997 * 109.46875 * 300.00161 * 5 4 3 37 37 H 0.97002 * 120.00004 * 25.00448 * 8 6 5 38 38 H 0.97003 * 120.00219 * 179.97438 * 16 15 13 39 39 H 1.08000 * 120.00068 * 0.02562 * 22 21 11 40 40 H 1.07998 * 120.00168 * 180.27158 * 23 22 21 41 41 H 1.08001 * 120.00479 * 179.83310 * 24 23 22 42 42 H 1.07997 * 120.00402 * 179.97438 * 25 24 23 43 43 H 1.08000 * 119.99621 * 359.97438 * 26 21 11 44 44 H 0.96699 * 116.99768 * 180.02562 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1267 1.2412 0.9526 5 6 3.9085 2.4348 1.0320 6 6 5.0106 2.2540 2.0777 7 1 5.6606 3.1291 2.0756 8 7 4.4057 2.0981 3.4028 9 6 5.1100 2.4169 4.5068 10 8 6.2444 2.8333 4.4032 11 6 4.4880 2.2560 5.8700 12 1 4.2152 1.2120 6.0239 13 6 3.2544 3.1166 5.9639 14 1 3.2245 4.0739 5.4648 15 6 2.1639 2.6818 6.6870 16 7 2.2360 1.5652 7.3781 17 14 0.5842 3.6786 6.6850 18 1 -0.2864 3.2244 5.5710 19 1 -0.1238 3.4868 7.9762 20 1 0.9068 5.1171 6.5062 21 6 5.4762 2.6786 6.9262 22 6 5.8744 3.9996 7.0112 23 6 6.7776 4.3881 7.9829 24 6 7.2897 3.4538 8.8637 25 6 6.8955 2.1318 8.7754 26 6 5.9889 1.7441 7.8065 27 6 5.8200 1.0264 1.7473 28 8 5.8849 0.1149 2.5377 29 8 6.4689 0.9458 0.5750 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9354 -0.0004 33 1 1.3856 2.1160 0.2660 34 1 2.4756 1.4867 -0.9927 35 1 3.2690 3.2695 1.3192 36 1 4.3588 2.6395 0.0607 37 1 3.4998 1.7615 3.4858 38 1 1.4689 1.2594 7.8871 39 1 5.4770 4.7289 6.3209 40 1 7.0854 5.4210 8.0521 41 1 7.9974 3.7568 9.6212 42 1 7.2959 1.4018 9.4633 43 1 5.6809 0.7113 7.7374 44 1 6.9747 0.1388 0.4078 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573368466.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:30 Heat of formation + Delta-G solvation = -128.307826 kcal Electronic energy + Delta-G solvation = -28929.144869 eV Core-core repulsion = 24812.146017 eV Total energy + Delta-G solvation = -4116.998852 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.34833 -38.97043 -38.23893 -37.60897 -35.86198 -34.69015 -33.64579 -33.47496 -31.09884 -29.89059 -29.83926 -27.20915 -26.10328 -24.35032 -23.87428 -21.68698 -21.49607 -20.41041 -20.07597 -19.39428 -17.96017 -17.18885 -16.75485 -16.66841 -16.33231 -15.87593 -15.72074 -15.54822 -15.22318 -14.52956 -14.47832 -14.11035 -13.85137 -13.76588 -13.40937 -12.99108 -12.82808 -12.46179 -12.40140 -12.26107 -12.19337 -11.81357 -11.58908 -11.55780 -11.23944 -11.09576 -11.02884 -11.02130 -10.43490 -10.39706 -10.23377 -10.02560 -9.97172 -9.46848 -9.40474 -8.81251 -8.70702 -8.57743 -7.89919 -7.56768 -6.24932 -4.32284 2.00032 2.42392 2.44404 2.50146 2.98072 3.19247 3.27357 3.29394 3.56803 3.70448 3.94051 4.29042 4.63885 4.86290 4.91382 4.97827 5.10724 5.13562 5.15596 5.27204 5.36202 5.40714 5.61584 5.71361 5.76213 5.83653 5.93580 6.22357 6.32834 6.41229 6.48474 6.53438 6.64157 6.68627 6.89837 6.92973 7.01452 7.02870 7.22978 7.41480 7.48644 7.63787 7.78872 7.99417 8.09197 8.12941 8.28060 8.71073 9.14271 9.33449 10.83394 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.009783 B = 0.004476 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2861.333225 B = 6254.516567 C = 8274.314106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.151 4.151 3 C 0.090 3.910 4 O -0.380 6.380 5 C 0.060 3.940 6 C 0.164 3.836 7 H 0.134 0.866 8 N -0.705 5.705 9 C 0.537 3.463 10 O -0.564 6.564 11 C 0.053 3.947 12 H 0.092 0.908 13 C -0.517 4.517 14 H 0.064 0.936 15 C 0.074 3.926 16 N -0.874 5.874 17 Si 0.898 3.102 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.272 1.272 21 C -0.008 4.008 22 C -0.086 4.086 23 C -0.135 4.135 24 C -0.149 4.149 25 C -0.132 4.132 26 C -0.116 4.116 27 C 0.470 3.530 28 O -0.495 6.495 29 O -0.523 6.523 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.418 0.582 38 H 0.267 0.733 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.112 0.888 44 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.474 0.219 -13.473 13.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.169 4.169 3 C 0.014 3.986 4 O -0.300 6.300 5 C -0.017 4.017 6 C 0.056 3.944 7 H 0.151 0.849 8 N -0.359 5.359 9 C 0.327 3.673 10 O -0.443 6.443 11 C 0.032 3.968 12 H 0.110 0.890 13 C -0.555 4.555 14 H 0.082 0.918 15 C -0.131 4.131 16 N -0.509 5.509 17 Si 0.725 3.275 18 H -0.203 1.203 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.010 4.010 22 C -0.104 4.104 23 C -0.153 4.153 24 C -0.167 4.167 25 C -0.150 4.150 26 C -0.135 4.135 27 C 0.309 3.691 28 O -0.380 6.380 29 O -0.334 6.334 30 H 0.116 0.884 31 H 0.122 0.878 32 H 0.133 0.867 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.255 0.745 38 H 0.077 0.923 39 H 0.129 0.871 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.130 0.870 44 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 0.990 0.326 -12.977 13.019 hybrid contribution -1.027 -0.129 -0.048 1.036 sum -0.037 0.197 -13.025 13.027 Atomic orbital electron populations 1.23837 0.95567 1.02292 0.99868 1.22718 0.95650 0.98181 1.00377 1.21540 0.88760 0.96150 0.92104 1.87976 1.44781 1.36359 1.60855 1.22749 0.92401 0.88684 0.97858 1.20363 0.93818 0.94718 0.85546 0.84895 1.45741 1.18993 1.68518 1.02617 1.21806 0.84657 0.73493 0.87296 1.90581 1.19102 1.46867 1.87728 1.18092 0.92623 1.01686 0.84349 0.89046 1.20667 0.96419 1.04412 1.33968 0.91830 1.24982 0.98901 0.94972 0.94259 1.69924 1.30969 1.21431 1.28608 0.86485 0.82827 0.80513 0.77630 1.20337 1.21076 1.19659 1.19998 0.92305 0.92780 0.95868 1.20806 0.96243 0.96150 0.97192 1.20936 0.99131 0.98399 0.96869 1.20790 1.01883 0.93784 1.00270 1.20902 0.99226 0.95767 0.99107 1.21004 0.96992 0.99309 0.96151 1.24077 0.77128 0.89505 0.78401 1.90720 1.59213 1.39280 1.48792 1.84499 1.62255 1.47297 1.39372 0.88367 0.87837 0.86662 0.92365 0.92296 0.90536 0.90732 0.74534 0.92317 0.87131 0.87629 0.87753 0.87577 0.86994 0.73757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.66 14.31 29.01 0.42 -1.25 16 2 C -0.15 -1.59 9.89 -36.03 -0.36 -1.95 16 3 C 0.09 0.94 6.35 36.00 0.23 1.17 16 4 O -0.38 -5.07 9.54 -35.23 -0.34 -5.41 16 5 C 0.06 0.71 5.61 37.16 0.21 0.92 16 6 C 0.16 2.54 2.88 -69.08 -0.20 2.34 16 7 H 0.13 1.97 7.59 -51.93 -0.39 1.58 16 8 N -0.70 -13.44 4.49 -54.93 -0.25 -13.68 16 9 C 0.54 12.16 6.86 -10.98 -0.08 12.09 16 10 O -0.56 -13.72 15.08 5.56 0.08 -13.64 16 11 C 0.05 1.30 2.38 -94.08 -0.22 1.08 16 12 H 0.09 2.42 7.13 -51.93 -0.37 2.05 16 13 C -0.52 -12.89 7.47 -34.44 -0.26 -13.15 16 14 H 0.06 1.57 7.82 -52.48 -0.41 1.16 16 15 C 0.07 1.89 5.45 -17.82 -0.10 1.79 16 16 N -0.87 -23.40 12.84 55.43 0.71 -22.69 16 17 Si 0.90 19.79 29.54 -169.99 -5.02 14.77 16 18 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 21 C -0.01 -0.20 4.30 -104.62 -0.45 -0.65 16 22 C -0.09 -1.95 8.31 -39.58 -0.33 -2.28 16 23 C -0.14 -2.72 10.05 -39.58 -0.40 -3.12 16 24 C -0.15 -2.86 10.05 -39.58 -0.40 -3.25 16 25 C -0.13 -2.65 10.05 -39.58 -0.40 -3.05 16 26 C -0.12 -2.66 9.67 -39.58 -0.38 -3.04 16 27 C 0.47 7.76 7.18 36.01 0.26 8.02 16 28 O -0.50 -10.20 17.07 -18.75 -0.32 -10.52 16 29 O -0.52 -6.42 13.35 -39.26 -0.52 -6.95 16 30 H 0.10 0.82 7.90 -52.49 -0.41 0.41 16 31 H 0.10 0.84 8.06 -52.48 -0.42 0.42 16 32 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 33 H 0.06 0.55 7.86 -51.93 -0.41 0.14 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.42 7.99 8.27 -40.82 -0.34 7.65 16 38 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 39 H 0.11 2.50 7.89 -52.49 -0.41 2.09 16 40 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 41 H 0.10 1.66 8.06 -52.49 -0.42 1.23 16 42 H 0.11 1.82 8.06 -52.49 -0.42 1.39 16 43 H 0.11 2.51 7.96 -52.49 -0.42 2.09 16 44 H 0.40 3.37 9.10 45.56 0.41 3.79 16 LS Contribution 388.58 15.07 5.86 5.86 Total: -1.00 -32.76 388.58 -7.52 -40.28 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: -5.27 Total: 16.32 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -2.45 Total: -4.35 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.46 Total: -36.37 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: -1.10 Total: -36.52 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.76 -7.52 -40.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573368466.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.024 kcal (2) G-P(sol) polarization free energy of solvation -32.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds