Wall clock time and date at job start Tue Mar 31 2020 17:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 120.00028 * 2 1 4 4 O 1.42894 * 109.47203 * 135.00391 * 3 2 1 5 5 C 1.42904 * 114.00326 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47324 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47238 * 174.99854 * 6 5 4 8 8 N 1.46499 * 109.47204 * 295.00055 * 6 5 4 9 9 C 1.34779 * 119.99799 * 204.72371 * 8 6 5 10 10 O 1.21283 * 119.99926 * 0.02562 * 9 8 6 11 11 C 1.50701 * 119.99863 * 180.02562 * 9 8 6 12 12 H 1.08995 * 109.47238 * 59.99363 * 11 9 8 13 13 C 1.50704 * 109.46801 * 299.99650 * 11 9 8 14 14 H 1.08004 * 120.00120 * 324.88393 * 13 11 9 15 15 C 1.37879 * 119.99949 * 144.87996 * 13 11 9 16 16 N 1.31515 * 119.99868 * 5.19483 * 15 13 11 17 17 Si 1.86796 * 120.00098 * 185.19266 * 15 13 11 18 18 H 1.48499 * 109.46982 * 90.00305 * 17 15 13 19 19 H 1.48503 * 109.47142 * 210.00050 * 17 15 13 20 20 H 1.48504 * 109.47266 * 330.00424 * 17 15 13 21 21 C 1.50695 * 109.47322 * 180.02562 * 11 9 8 22 22 C 1.38240 * 120.00041 * 66.00545 * 21 11 9 23 23 C 1.38231 * 119.99940 * 179.79062 * 22 21 11 24 24 C 1.38235 * 120.00116 * 0.44293 * 23 22 21 25 25 C 1.38237 * 120.00107 * 359.81380 * 24 23 22 26 26 C 1.38235 * 120.00105 * 246.28414 * 21 11 9 27 27 C 1.50705 * 109.46868 * 55.00218 * 6 5 4 28 28 O 1.20824 * 119.99736 * 239.99750 * 27 6 5 29 29 O 1.34230 * 120.00100 * 60.00221 * 27 6 5 30 30 H 1.07996 * 119.99951 * 359.97438 * 1 2 3 31 31 H 1.08005 * 120.00098 * 180.02562 * 1 2 3 32 32 H 1.08006 * 119.99867 * 180.02562 * 2 1 3 33 33 H 1.08999 * 109.47265 * 14.99929 * 3 2 1 34 34 H 1.09007 * 109.46977 * 254.99964 * 3 2 1 35 35 H 1.09006 * 109.46948 * 60.00036 * 5 4 3 36 36 H 1.08997 * 109.46875 * 300.00161 * 5 4 3 37 37 H 0.97002 * 120.00004 * 25.00448 * 8 6 5 38 38 H 0.97003 * 120.00219 * 179.97438 * 16 15 13 39 39 H 1.08000 * 120.00068 * 0.02562 * 22 21 11 40 40 H 1.07998 * 120.00168 * 180.27158 * 23 22 21 41 41 H 1.08001 * 120.00479 * 179.83310 * 24 23 22 42 42 H 1.07997 * 120.00402 * 179.97438 * 25 24 23 43 43 H 1.08000 * 119.99621 * 359.97438 * 26 21 11 44 44 H 0.96699 * 116.99768 * 180.02562 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1267 1.2412 0.9526 5 6 3.9085 2.4348 1.0320 6 6 5.0106 2.2540 2.0777 7 1 5.6606 3.1291 2.0756 8 7 4.4057 2.0981 3.4028 9 6 5.1100 2.4169 4.5068 10 8 6.2444 2.8333 4.4032 11 6 4.4880 2.2560 5.8700 12 1 4.2152 1.2120 6.0239 13 6 3.2544 3.1166 5.9639 14 1 3.2245 4.0739 5.4648 15 6 2.1639 2.6818 6.6870 16 7 2.2360 1.5652 7.3781 17 14 0.5842 3.6786 6.6850 18 1 -0.2864 3.2244 5.5710 19 1 -0.1238 3.4868 7.9762 20 1 0.9068 5.1171 6.5062 21 6 5.4762 2.6786 6.9262 22 6 5.8744 3.9996 7.0112 23 6 6.7776 4.3881 7.9829 24 6 7.2897 3.4538 8.8637 25 6 6.8955 2.1318 8.7754 26 6 5.9889 1.7441 7.8065 27 6 5.8200 1.0264 1.7473 28 8 5.8849 0.1149 2.5377 29 8 6.4689 0.9458 0.5750 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9354 -0.0004 33 1 1.3856 2.1160 0.2660 34 1 2.4756 1.4867 -0.9927 35 1 3.2690 3.2695 1.3192 36 1 4.3588 2.6395 0.0607 37 1 3.4998 1.7615 3.4858 38 1 1.4689 1.2594 7.8871 39 1 5.4770 4.7289 6.3209 40 1 7.0854 5.4210 8.0521 41 1 7.9974 3.7568 9.6212 42 1 7.2959 1.4018 9.4633 43 1 5.6809 0.7113 7.7374 44 1 6.9747 0.1388 0.4078 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573368466.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:29 Heat of formation + Delta-G solvation = -150.149449 kcal Electronic energy + Delta-G solvation = -28930.091993 eV Core-core repulsion = 24812.146017 eV Total energy + Delta-G solvation = -4117.945975 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.71433 -40.59597 -39.41416 -39.02102 -37.12271 -35.93758 -35.51576 -34.50820 -32.91726 -31.53827 -31.16787 -28.90852 -27.00033 -25.80229 -25.35712 -23.26447 -23.05534 -21.80183 -21.10736 -20.84207 -19.21031 -18.71757 -18.25829 -17.93896 -17.78425 -17.37662 -16.85076 -16.79933 -16.50988 -16.24530 -15.81796 -15.73692 -15.27571 -15.05903 -14.68559 -14.61938 -14.09880 -13.95417 -13.94086 -13.47923 -13.41439 -13.31141 -13.15315 -12.81227 -12.79220 -12.74677 -12.50186 -12.18692 -11.95406 -11.88173 -11.77909 -11.67549 -11.26744 -10.90887 -10.69035 -10.53687 -10.25144 -10.17033 -9.56103 -9.26191 -8.18840 -6.32071 0.75429 0.79925 1.20520 1.23242 1.44936 1.45741 1.55680 1.63218 2.09468 2.44128 2.47495 2.69529 3.09566 3.26743 3.63363 4.01525 4.14171 4.19620 4.21026 4.25637 4.29903 4.35773 4.41386 4.48531 4.52638 4.56710 4.61197 4.66462 4.87259 4.97126 4.98216 5.10160 5.35687 5.41764 5.46014 5.58264 5.66087 5.66466 5.72054 5.78118 5.82236 5.94311 6.15281 6.22954 6.39646 6.60080 6.75453 6.96020 7.34866 7.41569 8.89659 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.009783 B = 0.004476 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2861.333225 B = 6254.516567 C = 8274.314106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.175 4.175 3 C 0.088 3.912 4 O -0.410 6.410 5 C 0.067 3.933 6 C 0.155 3.845 7 H 0.142 0.858 8 N -0.698 5.698 9 C 0.537 3.463 10 O -0.586 6.586 11 C 0.053 3.947 12 H 0.057 0.943 13 C -0.515 4.515 14 H 0.063 0.937 15 C 0.029 3.971 16 N -0.909 5.909 17 Si 0.960 3.040 18 H -0.265 1.265 19 H -0.290 1.290 20 H -0.267 1.267 21 C -0.037 4.037 22 C -0.108 4.108 23 C -0.133 4.133 24 C -0.143 4.143 25 C -0.131 4.131 26 C -0.146 4.146 27 C 0.475 3.525 28 O -0.547 6.547 29 O -0.503 6.503 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.416 0.584 38 H 0.266 0.734 39 H 0.102 0.898 40 H 0.140 0.860 41 H 0.148 0.852 42 H 0.137 0.863 43 H 0.098 0.902 44 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.612 2.021 -14.307 14.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.193 4.193 3 C 0.012 3.988 4 O -0.330 6.330 5 C -0.010 4.010 6 C 0.048 3.952 7 H 0.160 0.840 8 N -0.350 5.350 9 C 0.327 3.673 10 O -0.466 6.466 11 C 0.032 3.968 12 H 0.075 0.925 13 C -0.553 4.553 14 H 0.081 0.919 15 C -0.173 4.173 16 N -0.545 5.545 17 Si 0.785 3.215 18 H -0.190 1.190 19 H -0.216 1.216 20 H -0.191 1.191 21 C -0.038 4.038 22 C -0.127 4.127 23 C -0.151 4.151 24 C -0.161 4.161 25 C -0.149 4.149 26 C -0.165 4.165 27 C 0.316 3.684 28 O -0.436 6.436 29 O -0.316 6.316 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.124 0.876 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.127 0.873 37 H 0.252 0.748 38 H 0.075 0.925 39 H 0.120 0.880 40 H 0.158 0.842 41 H 0.166 0.834 42 H 0.155 0.845 43 H 0.116 0.884 44 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 1.131 2.131 -13.887 14.095 hybrid contribution -0.982 -0.736 0.143 1.235 sum 0.149 1.395 -13.744 13.815 Atomic orbital electron populations 1.24044 0.95264 1.03318 0.98167 1.22807 0.96256 0.98213 1.02026 1.21709 0.88306 0.96215 0.92531 1.87942 1.45794 1.37156 1.62099 1.22808 0.91597 0.88599 0.97959 1.20750 0.95354 0.94539 0.84572 0.84050 1.45602 1.18571 1.67214 1.03584 1.21461 0.84453 0.73699 0.87725 1.90541 1.19743 1.48244 1.88113 1.17976 0.93185 0.99536 0.86087 0.92517 1.20776 0.96788 1.04196 1.33494 0.91896 1.25717 1.01802 0.95860 0.93920 1.70062 1.31674 1.23088 1.29717 0.85520 0.79205 0.79209 0.77568 1.19048 1.21562 1.19132 1.20100 0.93378 0.93915 0.96402 1.20872 0.97851 0.95384 0.98552 1.21353 0.97645 1.00444 0.95642 1.21279 1.01574 0.92852 1.00382 1.21282 0.97894 0.97337 0.98362 1.21120 0.98861 0.98758 0.97734 1.24199 0.76608 0.88954 0.78605 1.90713 1.61173 1.41130 1.50573 1.84434 1.61647 1.48469 1.37019 0.87228 0.86962 0.87649 0.91365 0.90143 0.89093 0.87291 0.74785 0.92513 0.87965 0.84219 0.83403 0.84504 0.88370 0.71450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 14.31 67.78 0.97 -1.99 16 2 C -0.17 -3.55 9.89 25.64 0.25 -3.30 16 3 C 0.09 1.66 6.35 71.23 0.45 2.12 16 4 O -0.41 -10.49 9.54 -148.98 -1.42 -11.91 16 5 C 0.07 1.44 5.61 71.98 0.40 1.85 16 6 C 0.16 4.73 2.88 44.25 0.13 4.86 16 7 H 0.14 4.08 7.59 -2.39 -0.02 4.06 16 8 N -0.70 -27.36 4.49 -446.09 -2.00 -29.36 16 9 C 0.54 25.32 6.86 87.66 0.60 25.92 16 10 O -0.59 -29.35 15.08 -3.04 -0.05 -29.40 16 11 C 0.05 2.74 2.38 -13.03 -0.03 2.71 16 12 H 0.06 3.25 7.13 -2.39 -0.02 3.24 16 13 C -0.51 -26.47 7.47 25.60 0.19 -26.27 16 14 H 0.06 3.17 7.82 -2.91 -0.02 3.15 16 15 C 0.03 1.49 5.45 84.66 0.46 1.95 16 16 N -0.91 -50.52 12.84 21.45 0.28 -50.24 16 17 Si 0.96 40.89 29.54 68.60 2.03 42.91 16 18 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 19 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 21 C -0.04 -1.85 4.30 -19.87 -0.09 -1.94 16 22 C -0.11 -4.99 8.31 22.27 0.18 -4.80 16 23 C -0.13 -5.09 10.05 22.27 0.22 -4.87 16 24 C -0.14 -5.08 10.05 22.27 0.22 -4.85 16 25 C -0.13 -5.12 10.05 22.27 0.22 -4.90 16 26 C -0.15 -6.93 9.67 22.27 0.22 -6.72 16 27 C 0.48 15.59 7.18 71.24 0.51 16.10 16 28 O -0.55 -23.22 17.07 21.97 0.37 -22.84 16 29 O -0.50 -11.51 13.35 -51.42 -0.69 -12.19 16 30 H 0.11 1.62 7.90 -2.91 -0.02 1.60 16 31 H 0.11 1.69 8.06 -2.91 -0.02 1.67 16 32 H 0.11 2.29 8.06 -2.91 -0.02 2.26 16 33 H 0.07 1.14 7.86 -2.39 -0.02 1.12 16 34 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.42 16.51 8.27 -92.71 -0.77 15.74 16 38 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 39 H 0.10 4.73 7.89 -2.91 -0.02 4.71 16 40 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 41 H 0.15 3.97 8.06 -2.91 -0.02 3.94 16 42 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 43 H 0.10 4.74 7.96 -2.91 -0.02 4.72 16 44 H 0.42 6.35 9.10 -74.06 -0.67 5.68 16 Total: -1.00 -74.05 388.58 3.03 -71.01 By element: Atomic # 1 Polarization: 46.57 SS G_CDS: -0.41 Total: 46.16 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 4.93 Total: -4.15 kcal Atomic # 7 Polarization: -77.87 SS G_CDS: -1.73 Total: -79.60 kcal Atomic # 8 Polarization: -74.56 SS G_CDS: -1.78 Total: -76.34 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.91 kcal Total: -74.05 3.03 -71.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573368466.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.136 kcal (2) G-P(sol) polarization free energy of solvation -74.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds