Wall clock time and date at job start Tue Mar 31 2020 18:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47424 * 2 1 4 4 C 1.50698 * 109.47134 * 120.00140 * 2 1 3 5 5 O 1.20827 * 120.00469 * 119.99843 * 4 2 1 6 6 O 1.34235 * 119.99866 * 299.99631 * 4 2 1 7 7 N 1.46503 * 109.47326 * 239.99951 * 2 1 3 8 8 C 1.34771 * 120.00309 * 119.99997 * 7 2 1 9 9 O 1.21284 * 120.00220 * 176.32344 * 8 7 2 10 10 C 1.50707 * 119.99971 * 356.32353 * 8 7 2 11 11 C 1.50696 * 109.47298 * 185.02117 * 10 8 7 12 12 C 1.38323 * 119.96644 * 269.98059 * 11 10 8 13 13 C 1.38280 * 120.14128 * 180.02562 * 12 11 10 14 14 C 1.38124 * 120.06597 * 359.67897 * 13 12 11 15 15 C 1.38857 * 119.92894 * 0.59861 * 14 13 12 16 16 O 1.35754 * 120.06969 * 179.70144 * 15 14 13 17 17 C 1.34830 * 116.99870 * 354.19503 * 16 15 14 18 18 H 1.08007 * 119.99902 * 5.02711 * 17 16 15 19 19 C 1.38658 * 120.00038 * 185.03500 * 17 16 15 20 20 N 1.31561 * 119.99864 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00118 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47272 * 89.99854 * 21 19 17 23 23 H 1.48495 * 109.47179 * 210.00793 * 21 19 17 24 24 H 1.48504 * 109.46910 * 330.00142 * 21 19 17 25 25 C 1.38085 * 119.96748 * 89.99927 * 11 10 8 26 26 C 1.46506 * 119.99898 * 300.00288 * 7 2 1 27 27 C 1.52999 * 117.49729 * 197.09015 * 26 7 2 28 28 C 1.52998 * 60.00089 * 252.51160 * 27 26 7 29 29 H 1.08999 * 109.47077 * 300.00191 * 1 2 3 30 30 H 1.09007 * 109.46894 * 59.99846 * 1 2 3 31 31 H 1.09001 * 109.47424 * 180.02562 * 1 2 3 32 32 H 0.96700 * 117.00069 * 179.97438 * 6 4 2 33 33 H 1.08994 * 109.46855 * 65.01944 * 10 8 7 34 34 H 1.09004 * 109.47069 * 305.02044 * 10 8 7 35 35 H 1.08003 * 119.92815 * 0.02562 * 12 11 10 36 36 H 1.07990 * 119.96756 * 179.97438 * 13 12 11 37 37 H 1.08003 * 120.03537 * 180.31544 * 14 13 12 38 38 H 0.97001 * 119.99491 * 179.97438 * 20 19 17 39 39 H 1.07998 * 120.03283 * 359.97438 * 25 11 10 40 40 H 1.09000 * 115.54791 * 342.80025 * 26 7 2 41 41 H 1.09001 * 117.49864 * 0.02562 * 27 26 7 42 42 H 1.09005 * 117.49640 * 145.02053 * 27 26 7 43 43 H 1.09001 * 117.49677 * 252.51592 * 28 27 26 44 44 H 1.09001 * 117.49863 * 107.49384 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7269 -1.6928 1.1196 6 8 1.7081 -0.2518 2.4496 7 7 2.0184 -0.6906 -1.1962 8 6 2.7932 -0.0357 -2.0833 9 8 3.2524 -0.6251 -3.0387 10 6 3.0891 1.4291 -1.8883 11 6 3.8660 1.9466 -3.0713 12 6 5.2485 1.9035 -3.0624 13 6 5.9650 2.3778 -4.1458 14 6 5.3015 2.8902 -5.2435 15 6 3.9138 2.9402 -5.2531 16 8 3.2589 3.4489 -6.3279 17 6 4.0136 3.9984 -7.3008 18 1 5.0909 3.9474 -7.2423 19 6 3.4067 4.6292 -8.3761 20 7 4.1431 5.1650 -9.3256 21 14 1.5435 4.7170 -8.4775 22 1 1.0688 5.9524 -7.8040 23 1 1.1257 4.7380 -9.9023 24 1 0.9549 3.5301 -7.8065 25 6 3.1970 2.4636 -4.1630 26 6 1.6644 -2.0933 -1.4280 27 6 2.4996 -2.8738 -2.4449 28 6 1.0689 -2.4557 -2.7900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 2.0535 -0.7410 3.2089 33 1 3.6773 1.5631 -0.9805 34 1 2.1528 1.9802 -1.7992 35 1 5.7695 1.4985 -2.2074 36 1 7.0443 2.3432 -4.1356 37 1 5.8614 3.2559 -6.0915 38 1 3.7185 5.6059 -10.0780 39 1 2.1176 2.4969 -4.1695 40 1 1.2956 -2.6351 -0.5571 41 1 3.3128 -2.3439 -2.9410 42 1 2.6806 -3.9296 -2.2430 43 1 0.3087 -3.2364 -2.8151 44 1 0.9405 -1.6507 -3.5136 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588584558.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:25 Heat of formation + Delta-G solvation = -74.417956 kcal Electronic energy + Delta-G solvation = -28655.065413 eV Core-core repulsion = 24540.403402 eV Total energy + Delta-G solvation = -4114.662011 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.28808 -40.10419 -39.08223 -37.14154 -36.59611 -36.15342 -35.36791 -32.40883 -32.07923 -30.79605 -29.43054 -27.31852 -25.53695 -25.17559 -23.22001 -22.33623 -22.17431 -21.72473 -20.70201 -19.10665 -18.50534 -17.74162 -17.53800 -17.22948 -16.89769 -16.17562 -15.88278 -15.42340 -15.13291 -14.75669 -14.46656 -14.17901 -13.93396 -13.83927 -13.69169 -13.61243 -13.36361 -13.10784 -12.64566 -12.62425 -12.48989 -12.22339 -12.09586 -11.90330 -11.84630 -11.47975 -11.30156 -11.22427 -10.91573 -10.83167 -10.79119 -10.69905 -10.38446 -10.14620 -9.37865 -9.34070 -8.85034 -8.69907 -8.14653 -7.34562 -6.38801 -4.05553 1.71184 1.94567 2.17406 2.29558 2.51856 2.84802 3.23547 3.26468 3.42068 3.89293 4.16082 4.25879 4.29422 4.41741 4.60617 4.68676 4.71077 4.83632 4.96932 5.01437 5.06389 5.11130 5.18503 5.23473 5.26061 5.45896 5.48951 5.63398 5.67206 5.71999 5.85204 5.99960 6.02079 6.12857 6.24916 6.26659 6.52876 6.63835 6.78899 7.05720 7.10549 7.21745 7.33257 7.41997 7.61734 7.82965 8.06636 8.10552 8.96679 9.59374 10.69086 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.016364 B = 0.002865 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.647514 B = 9771.947168 C =10096.548026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.149 3.851 3 H 0.135 0.865 4 C 0.463 3.537 5 O -0.496 6.496 6 O -0.514 6.514 7 N -0.577 5.577 8 C 0.521 3.479 9 O -0.495 6.495 10 C -0.099 4.099 11 C -0.037 4.037 12 C -0.185 4.185 13 C -0.075 4.075 14 C -0.216 4.216 15 C 0.160 3.840 16 O -0.219 6.219 17 C -0.388 4.388 18 H 0.106 0.894 19 C 0.063 3.937 20 N -0.881 5.881 21 Si 0.905 3.095 22 H -0.274 1.274 23 H -0.282 1.282 24 H -0.260 1.260 25 C -0.175 4.175 26 C 0.078 3.922 27 C -0.191 4.191 28 C -0.190 4.190 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.412 0.588 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.133 0.867 38 H 0.279 0.721 39 H 0.114 0.886 40 H 0.122 0.878 41 H 0.146 0.854 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.784 -10.477 23.504 26.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.042 3.958 3 H 0.152 0.848 4 C 0.303 3.697 5 O -0.382 6.382 6 O -0.325 6.325 7 N -0.311 5.311 8 C 0.311 3.689 9 O -0.368 6.368 10 C -0.138 4.138 11 C -0.037 4.037 12 C -0.204 4.204 13 C -0.093 4.093 14 C -0.235 4.235 15 C 0.109 3.891 16 O -0.124 6.124 17 C -0.464 4.464 18 H 0.123 0.877 19 C -0.140 4.140 20 N -0.519 5.519 21 Si 0.730 3.270 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.184 1.184 25 C -0.194 4.194 26 C -0.026 4.026 27 C -0.228 4.228 28 C -0.229 4.229 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.271 0.729 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.129 0.871 37 H 0.150 0.850 38 H 0.089 0.911 39 H 0.132 0.868 40 H 0.140 0.860 41 H 0.164 0.836 42 H 0.103 0.897 43 H 0.112 0.888 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.713 -10.713 22.323 25.934 hybrid contribution -0.363 -0.311 0.443 0.652 sum -8.076 -11.023 22.766 26.552 Atomic orbital electron populations 1.22134 0.90916 1.04012 1.04544 1.20646 0.97082 0.97223 0.80827 0.84753 1.23944 0.77491 0.83171 0.85103 1.90783 1.34781 1.25657 1.86993 1.84518 1.72289 1.59084 1.16656 1.47221 1.51612 1.11303 1.20914 1.20860 0.76876 0.89346 0.81847 1.90556 1.49072 1.67290 1.29901 1.20734 1.01987 0.91910 0.99217 1.18585 0.93202 0.98479 0.93454 1.20415 0.92949 1.07327 0.99717 1.20738 0.98721 0.96841 0.93047 1.21309 0.94271 1.07375 1.00521 1.18991 0.90767 0.92423 0.86948 1.83567 1.36149 1.66884 1.25823 1.20765 0.92318 1.34363 0.98954 0.87656 1.24455 1.00182 0.95027 0.94338 1.69651 1.36216 1.35654 1.10426 0.86188 0.83795 0.79646 0.77321 1.19905 1.20812 1.18376 1.19917 0.98883 1.07623 0.92993 1.21477 1.05577 0.81776 0.93732 1.24036 0.97284 0.99741 1.01743 1.23298 0.97252 1.03717 0.98582 0.89730 0.89924 0.91379 0.72875 0.88245 0.88034 0.87756 0.87142 0.84969 0.91102 0.86818 0.86040 0.83631 0.89687 0.88779 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 9.13 37.16 0.34 -0.52 16 2 C 0.15 1.10 3.06 -69.08 -0.21 0.89 16 3 H 0.14 0.74 5.79 -51.93 -0.30 0.44 16 4 C 0.46 3.72 7.41 36.00 0.27 3.98 16 5 O -0.50 -5.78 15.62 -18.75 -0.29 -6.07 16 6 O -0.51 -2.59 13.33 -39.27 -0.52 -3.11 16 7 N -0.58 -6.32 2.50 -159.89 -0.40 -6.72 16 8 C 0.52 7.17 7.42 -10.98 -0.08 7.09 16 9 O -0.49 -8.77 11.92 5.55 0.07 -8.70 16 10 C -0.10 -1.19 4.15 -29.03 -0.12 -1.31 16 11 C -0.04 -0.62 4.38 -104.65 -0.46 -1.08 16 12 C -0.19 -3.20 9.70 -39.53 -0.38 -3.58 16 13 C -0.08 -1.41 10.04 -39.61 -0.40 -1.81 16 14 C -0.22 -4.78 9.17 -39.39 -0.36 -5.14 16 15 C 0.16 3.78 6.65 -39.11 -0.26 3.52 16 16 O -0.22 -5.86 8.59 0.03 0.00 -5.86 16 17 C -0.39 -11.09 9.95 30.89 0.31 -10.78 16 18 H 0.11 3.07 5.44 -52.48 -0.29 2.79 16 19 C 0.06 1.78 5.49 -17.51 -0.10 1.69 16 20 N -0.88 -25.72 13.96 55.48 0.77 -24.94 16 21 Si 0.90 21.85 28.62 -169.99 -4.86 16.98 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 25 C -0.17 -3.49 9.65 -39.39 -0.38 -3.87 16 26 C 0.08 0.89 4.75 -67.93 -0.32 0.57 16 27 C -0.19 -2.50 9.64 -26.73 -0.26 -2.76 16 28 C -0.19 -2.22 9.90 -26.73 -0.26 -2.49 16 29 H 0.08 0.32 8.11 -51.93 -0.42 -0.10 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.39 7.64 -51.93 -0.40 -0.01 16 32 H 0.41 0.56 9.10 45.56 0.41 0.98 16 33 H 0.10 0.94 7.80 -51.93 -0.41 0.53 16 34 H 0.10 0.95 7.64 -51.93 -0.40 0.55 16 35 H 0.10 1.55 8.06 -52.48 -0.42 1.12 16 36 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 37 H 0.13 3.06 5.64 -52.48 -0.30 2.77 16 38 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.11 2.11 8.06 -52.49 -0.42 1.68 16 40 H 0.12 1.25 7.20 -51.93 -0.37 0.87 16 41 H 0.15 2.37 4.96 -53.39 -0.26 2.10 16 42 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.10 1.34 7.82 -51.93 -0.41 0.93 16 LS Contribution 370.38 15.07 5.58 5.58 Total: -1.00 -35.16 370.38 -7.14 -42.30 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -4.80 Total: 6.14 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -2.68 Total: -15.60 kcal Atomic # 7 Polarization: -32.04 SS G_CDS: 0.37 Total: -31.66 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.75 Total: -23.74 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.86 Total: 16.98 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.16 -7.14 -42.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588584558.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.115 kcal (2) G-P(sol) polarization free energy of solvation -35.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds