Wall clock time and date at job start Tue Mar 31 2020 18:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47424 * 2 1 4 4 C 1.50698 * 109.47134 * 120.00140 * 2 1 3 5 5 O 1.20827 * 120.00469 * 119.99843 * 4 2 1 6 6 O 1.34235 * 119.99866 * 299.99631 * 4 2 1 7 7 N 1.46503 * 109.47326 * 239.99951 * 2 1 3 8 8 C 1.34771 * 120.00309 * 119.99997 * 7 2 1 9 9 O 1.21284 * 120.00220 * 176.32344 * 8 7 2 10 10 C 1.50707 * 119.99971 * 356.32353 * 8 7 2 11 11 C 1.50696 * 109.47298 * 185.02117 * 10 8 7 12 12 C 1.38323 * 119.96644 * 269.98059 * 11 10 8 13 13 C 1.38280 * 120.14128 * 180.02562 * 12 11 10 14 14 C 1.38124 * 120.06597 * 359.67897 * 13 12 11 15 15 C 1.38857 * 119.92894 * 0.59861 * 14 13 12 16 16 O 1.35754 * 120.06969 * 179.70144 * 15 14 13 17 17 C 1.34830 * 116.99870 * 354.19503 * 16 15 14 18 18 H 1.08007 * 119.99902 * 5.02711 * 17 16 15 19 19 C 1.38658 * 120.00038 * 185.03500 * 17 16 15 20 20 N 1.31561 * 119.99864 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00118 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47272 * 89.99854 * 21 19 17 23 23 H 1.48495 * 109.47179 * 210.00793 * 21 19 17 24 24 H 1.48504 * 109.46910 * 330.00142 * 21 19 17 25 25 C 1.38085 * 119.96748 * 89.99927 * 11 10 8 26 26 C 1.46506 * 119.99898 * 300.00288 * 7 2 1 27 27 C 1.52999 * 117.49729 * 197.09015 * 26 7 2 28 28 C 1.52998 * 60.00089 * 252.51160 * 27 26 7 29 29 H 1.08999 * 109.47077 * 300.00191 * 1 2 3 30 30 H 1.09007 * 109.46894 * 59.99846 * 1 2 3 31 31 H 1.09001 * 109.47424 * 180.02562 * 1 2 3 32 32 H 0.96700 * 117.00069 * 179.97438 * 6 4 2 33 33 H 1.08994 * 109.46855 * 65.01944 * 10 8 7 34 34 H 1.09004 * 109.47069 * 305.02044 * 10 8 7 35 35 H 1.08003 * 119.92815 * 0.02562 * 12 11 10 36 36 H 1.07990 * 119.96756 * 179.97438 * 13 12 11 37 37 H 1.08003 * 120.03537 * 180.31544 * 14 13 12 38 38 H 0.97001 * 119.99491 * 179.97438 * 20 19 17 39 39 H 1.07998 * 120.03283 * 359.97438 * 25 11 10 40 40 H 1.09000 * 115.54791 * 342.80025 * 26 7 2 41 41 H 1.09001 * 117.49864 * 0.02562 * 27 26 7 42 42 H 1.09005 * 117.49640 * 145.02053 * 27 26 7 43 43 H 1.09001 * 117.49677 * 252.51592 * 28 27 26 44 44 H 1.09001 * 117.49863 * 107.49384 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7269 -1.6928 1.1196 6 8 1.7081 -0.2518 2.4496 7 7 2.0184 -0.6906 -1.1962 8 6 2.7932 -0.0357 -2.0833 9 8 3.2524 -0.6251 -3.0387 10 6 3.0891 1.4291 -1.8883 11 6 3.8660 1.9466 -3.0713 12 6 5.2485 1.9035 -3.0624 13 6 5.9650 2.3778 -4.1458 14 6 5.3015 2.8902 -5.2435 15 6 3.9138 2.9402 -5.2531 16 8 3.2589 3.4489 -6.3279 17 6 4.0136 3.9984 -7.3008 18 1 5.0909 3.9474 -7.2423 19 6 3.4067 4.6292 -8.3761 20 7 4.1431 5.1650 -9.3256 21 14 1.5435 4.7170 -8.4775 22 1 1.0688 5.9524 -7.8040 23 1 1.1257 4.7380 -9.9023 24 1 0.9549 3.5301 -7.8065 25 6 3.1970 2.4636 -4.1630 26 6 1.6644 -2.0933 -1.4280 27 6 2.4996 -2.8738 -2.4449 28 6 1.0689 -2.4557 -2.7900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 2.0535 -0.7410 3.2089 33 1 3.6773 1.5631 -0.9805 34 1 2.1528 1.9802 -1.7992 35 1 5.7695 1.4985 -2.2074 36 1 7.0443 2.3432 -4.1356 37 1 5.8614 3.2559 -6.0915 38 1 3.7185 5.6059 -10.0780 39 1 2.1176 2.4969 -4.1695 40 1 1.2956 -2.6351 -0.5571 41 1 3.3128 -2.3439 -2.9410 42 1 2.6806 -3.9296 -2.2430 43 1 0.3087 -3.2364 -2.8151 44 1 0.9405 -1.6507 -3.5136 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588584558.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:23 Heat of formation + Delta-G solvation = -97.890551 kcal Electronic energy + Delta-G solvation = -28656.083261 eV Core-core repulsion = 24540.403402 eV Total energy + Delta-G solvation = -4115.679860 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.08863 -41.04350 -40.62007 -38.57358 -37.52932 -36.99085 -36.19014 -34.47176 -33.40436 -31.56601 -31.05222 -28.62573 -27.19020 -26.04497 -24.31847 -23.33624 -23.23957 -22.80123 -22.25459 -20.14029 -19.62532 -19.07369 -18.85132 -18.28604 -17.73135 -17.05003 -16.87123 -16.65947 -16.58853 -16.05693 -15.74912 -15.65362 -15.41707 -15.14873 -14.78446 -14.43508 -14.39447 -14.33415 -14.16191 -13.90440 -13.75679 -13.11890 -13.04744 -12.99119 -12.66174 -12.58278 -12.50923 -12.45021 -12.34706 -12.29243 -12.14900 -11.93125 -11.55790 -11.31274 -11.28993 -10.90941 -10.42479 -9.67158 -9.60564 -9.07085 -8.49857 -6.22830 0.46012 0.69484 1.14489 1.30732 1.35184 1.37107 1.52019 1.59514 2.19556 2.28472 2.74994 2.98085 3.03064 3.09639 3.47055 3.66482 3.84805 3.93806 3.96399 4.05012 4.08838 4.13047 4.25889 4.28872 4.37347 4.50435 4.53999 4.57294 4.69527 4.78913 4.81357 4.86117 4.94895 5.04883 5.23332 5.27521 5.31888 5.39075 5.60683 5.63334 5.65281 5.71664 5.76357 5.90790 6.16380 6.26976 6.84414 6.96633 7.12698 7.58796 8.62079 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.016364 B = 0.002865 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.647514 B = 9771.947168 C =10096.548026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.140 3.860 3 H 0.162 0.838 4 C 0.473 3.527 5 O -0.539 6.539 6 O -0.502 6.502 7 N -0.572 5.572 8 C 0.517 3.483 9 O -0.546 6.546 10 C -0.096 4.096 11 C -0.027 4.027 12 C -0.170 4.170 13 C -0.078 4.078 14 C -0.239 4.239 15 C 0.120 3.880 16 O -0.245 6.245 17 C -0.400 4.400 18 H 0.079 0.921 19 C 0.009 3.991 20 N -0.925 5.925 21 Si 0.972 3.028 22 H -0.260 1.260 23 H -0.268 1.268 24 H -0.265 1.265 25 C -0.177 4.177 26 C 0.091 3.909 27 C -0.212 4.212 28 C -0.183 4.183 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.430 0.570 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.138 0.862 37 H 0.106 0.894 38 H 0.285 0.715 39 H 0.127 0.873 40 H 0.138 0.862 41 H 0.115 0.885 42 H 0.095 0.905 43 H 0.117 0.883 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.873 -10.959 27.724 31.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.035 3.965 3 H 0.179 0.821 4 C 0.314 3.686 5 O -0.428 6.428 6 O -0.315 6.315 7 N -0.304 5.304 8 C 0.307 3.693 9 O -0.423 6.423 10 C -0.135 4.135 11 C -0.027 4.027 12 C -0.188 4.188 13 C -0.096 4.096 14 C -0.258 4.258 15 C 0.071 3.929 16 O -0.153 6.153 17 C -0.476 4.476 18 H 0.096 0.904 19 C -0.189 4.189 20 N -0.566 5.566 21 Si 0.794 3.206 22 H -0.185 1.185 23 H -0.193 1.193 24 H -0.190 1.190 25 C -0.196 4.196 26 C -0.013 4.013 27 C -0.250 4.250 28 C -0.221 4.221 29 H 0.125 0.875 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.292 0.708 33 H 0.157 0.843 34 H 0.156 0.844 35 H 0.160 0.840 36 H 0.155 0.845 37 H 0.124 0.876 38 H 0.094 0.906 39 H 0.145 0.855 40 H 0.155 0.845 41 H 0.133 0.867 42 H 0.114 0.886 43 H 0.135 0.865 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.813 -11.190 26.642 30.518 hybrid contribution 0.414 -0.313 -0.510 0.727 sum -9.400 -11.503 26.133 30.060 Atomic orbital electron populations 1.22145 0.89119 1.04207 1.05710 1.21046 0.98420 0.97848 0.79167 0.82119 1.23914 0.76431 0.82275 0.85939 1.90790 1.36842 1.27541 1.87629 1.84470 1.71727 1.58853 1.16419 1.47233 1.50529 1.11083 1.21559 1.21121 0.76666 0.89901 0.81600 1.90586 1.51273 1.68373 1.32083 1.20872 1.03709 0.90841 0.98113 1.19096 0.93643 0.96044 0.93946 1.20967 0.93435 1.04608 0.99819 1.21077 1.00329 0.95916 0.92289 1.21319 0.94178 1.09028 1.01304 1.19578 0.91793 0.93945 0.87556 1.83504 1.36123 1.68931 1.26747 1.20705 0.91607 1.35096 1.00192 0.90395 1.25301 1.05077 0.94703 0.93833 1.69738 1.38174 1.37319 1.11388 0.85199 0.77779 0.79649 0.77968 1.18503 1.19256 1.18958 1.20260 0.99714 1.06983 0.92644 1.21545 1.03942 0.82086 0.93752 1.23907 0.97196 1.00353 1.03514 1.23250 0.96912 1.03558 0.98397 0.87491 0.89804 0.91751 0.70785 0.84347 0.84447 0.83980 0.84457 0.87606 0.90570 0.85518 0.84495 0.86709 0.88622 0.86456 0.90782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.13 71.98 0.66 -0.34 16 2 C 0.14 1.46 3.06 44.24 0.14 1.59 16 3 H 0.16 0.80 5.79 -2.39 -0.01 0.79 16 4 C 0.47 5.72 7.41 71.24 0.53 6.25 16 5 O -0.54 -11.03 15.62 21.96 0.34 -10.68 16 6 O -0.50 -2.80 13.33 -51.46 -0.69 -3.48 16 7 N -0.57 -10.83 2.50 -778.16 -1.95 -12.78 16 8 C 0.52 12.84 7.42 87.66 0.65 13.49 16 9 O -0.55 -19.00 11.92 -3.04 -0.04 -19.04 16 10 C -0.10 -1.88 4.15 29.10 0.12 -1.76 16 11 C -0.03 -0.83 4.38 -19.88 -0.09 -0.92 16 12 C -0.17 -5.36 9.70 22.30 0.22 -5.15 16 13 C -0.08 -2.87 10.04 22.25 0.22 -2.65 16 14 C -0.24 -11.09 9.17 22.39 0.21 -10.88 16 15 C 0.12 5.85 6.65 22.58 0.15 6.00 16 16 O -0.25 -13.76 8.59 -22.79 -0.20 -13.96 16 17 C -0.40 -24.28 9.95 67.92 0.68 -23.61 16 18 H 0.08 4.98 5.44 -2.91 -0.02 4.97 16 19 C 0.01 0.53 5.49 84.83 0.47 0.99 16 20 N -0.93 -56.45 13.96 21.61 0.30 -56.14 16 21 Si 0.97 46.21 28.62 68.60 1.96 48.17 16 22 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 25 C -0.18 -6.93 9.65 22.39 0.22 -6.71 16 26 C 0.09 1.89 4.75 44.99 0.21 2.10 16 27 C -0.21 -5.50 9.64 30.59 0.29 -5.21 16 28 C -0.18 -4.09 9.90 30.59 0.30 -3.78 16 29 H 0.11 0.26 8.11 -2.39 -0.02 0.24 16 30 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.06 0.49 7.64 -2.39 -0.02 0.47 16 32 H 0.43 -0.58 9.10 -74.06 -0.67 -1.25 16 33 H 0.14 1.71 7.80 -2.39 -0.02 1.69 16 34 H 0.14 1.77 7.64 -2.39 -0.02 1.75 16 35 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 36 H 0.14 4.21 8.06 -2.92 -0.02 4.18 16 37 H 0.11 5.38 5.64 -2.91 -0.02 5.37 16 38 H 0.28 15.88 8.31 -92.71 -0.77 15.11 16 39 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 40 H 0.14 2.45 7.20 -2.39 -0.02 2.43 16 41 H 0.12 3.84 4.96 -25.52 -0.13 3.72 16 42 H 0.10 2.17 8.14 -2.38 -0.02 2.16 16 43 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.07 2.02 7.82 -2.39 -0.02 2.00 16 Total: -1.00 -83.44 370.38 4.98 -78.47 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.26 Total: 20.03 kcal Atomic # 6 Polarization: -35.55 SS G_CDS: 4.97 Total: -30.58 kcal Atomic # 7 Polarization: -67.28 SS G_CDS: -1.65 Total: -68.92 kcal Atomic # 8 Polarization: -46.59 SS G_CDS: -0.57 Total: -47.16 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.96 Total: 48.17 kcal Total: -83.44 4.98 -78.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588584558.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.422 kcal (2) G-P(sol) polarization free energy of solvation -83.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds