Wall clock time and date at job start Tue Mar 31 2020 17:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30990 * 1 3 3 C 1.50700 * 119.99889 * 2 1 4 4 O 1.42896 * 109.47613 * 134.99503 * 3 2 1 5 5 C 1.42897 * 114.00168 * 179.97438 * 4 3 2 6 6 C 1.53009 * 109.47191 * 180.02562 * 5 4 3 7 7 H 1.08991 * 109.46881 * 175.00427 * 6 5 4 8 8 N 1.46499 * 109.46777 * 295.00522 * 6 5 4 9 9 C 1.34784 * 119.99630 * 204.99636 * 8 6 5 10 10 O 1.21281 * 119.99942 * 0.02562 * 9 8 6 11 11 C 1.50701 * 119.99890 * 180.02562 * 9 8 6 12 12 C 1.50697 * 109.47024 * 180.02562 * 11 9 8 13 13 C 1.37635 * 120.13029 * 265.00398 * 12 11 9 14 14 C 1.38616 * 120.25180 * 180.29925 * 13 12 11 15 15 C 1.38657 * 120.49769 * 359.43991 * 14 13 12 16 16 C 1.37599 * 120.24996 * 0.55619 * 15 14 13 17 17 C 1.40698 * 120.12726 * 85.02044 * 12 11 9 18 18 C 1.41401 * 120.24306 * 359.95711 * 17 12 11 19 19 H 1.07996 * 120.00140 * 329.78968 * 18 17 12 20 20 C 1.39943 * 119.99611 * 149.79577 * 18 17 12 21 21 N 1.30828 * 120.00177 * 162.08912 * 20 18 17 22 22 Si 1.86803 * 120.00186 * 342.08044 * 20 18 17 23 23 H 1.48499 * 109.47049 * 95.39710 * 22 20 18 24 24 H 1.48502 * 109.46957 * 215.39592 * 22 20 18 25 25 H 1.48500 * 109.46884 * 335.39299 * 22 20 18 26 26 C 1.50700 * 109.46753 * 55.00092 * 6 5 4 27 27 O 1.20823 * 120.00294 * 240.00079 * 26 6 5 28 28 O 1.34231 * 119.99612 * 60.00291 * 26 6 5 29 29 H 1.08010 * 120.00105 * 179.97438 * 1 2 3 30 30 H 1.08003 * 120.00452 * 0.02562 * 1 2 3 31 31 H 1.08003 * 120.00452 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.46979 * 14.99303 * 3 2 1 33 33 H 1.09002 * 109.46953 * 254.99648 * 3 2 1 34 34 H 1.09003 * 109.47126 * 60.00715 * 5 4 3 35 35 H 1.09002 * 109.47746 * 300.00282 * 5 4 3 36 36 H 0.97000 * 120.00799 * 25.00053 * 8 6 5 37 37 H 1.08999 * 109.47141 * 60.00010 * 11 9 8 38 38 H 1.09003 * 109.46955 * 300.00132 * 11 9 8 39 39 H 1.08001 * 119.87405 * 0.02562 * 13 12 11 40 40 H 1.07997 * 119.74655 * 179.69995 * 14 13 12 41 41 H 1.07996 * 119.87456 * 180.30205 * 15 14 13 42 42 H 1.07999 * 120.12771 * 179.75037 * 16 15 14 43 43 H 0.96989 * 120.00516 * 179.97438 * 21 20 18 44 44 H 0.96703 * 116.99236 * 179.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1265 1.2415 0.9527 5 6 3.9081 2.4351 1.0320 6 6 5.0110 2.2540 2.0770 7 1 5.6607 3.1292 2.0749 8 7 4.4069 2.0975 3.4024 9 6 5.1098 2.4211 4.5059 10 8 6.2423 2.8425 4.4016 11 6 4.4886 2.2595 5.8694 12 6 5.4751 2.6882 6.9249 13 6 6.2762 1.7544 7.5418 14 6 7.1802 2.1451 8.5173 15 6 7.2965 3.4797 8.8749 16 6 6.5059 4.4305 8.2714 17 6 5.5805 4.0446 7.2837 18 6 4.7630 5.0129 6.6564 19 1 4.4365 4.8657 5.6375 20 6 4.3773 6.1620 7.3557 21 7 3.9331 7.2060 6.7043 22 14 4.4963 6.2052 9.2195 23 1 5.7811 6.8337 9.6190 24 1 3.3662 6.9963 9.7694 25 1 4.4361 4.8201 9.7515 26 6 5.8203 1.0267 1.7457 27 8 5.8858 0.1148 2.5356 28 8 6.4684 0.9467 0.5729 29 1 -0.5401 -0.9354 -0.0004 30 1 -0.5401 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3853 2.1161 0.2659 33 1 2.4754 1.4867 -0.9927 34 1 3.2686 3.2698 1.3192 35 1 4.3585 2.6398 0.0607 36 1 3.5010 1.7608 3.4859 37 1 4.2206 1.2145 6.0250 38 1 3.5936 2.8780 5.9365 39 1 6.1972 0.7127 7.2678 40 1 7.8014 1.4049 8.9996 41 1 8.0075 3.7736 9.6328 42 1 6.5953 5.4690 8.5543 43 1 3.6654 8.0023 7.1890 44 1 6.9748 0.1400 0.4054 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588856534.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:17 Heat of formation + Delta-G solvation = -132.023016 kcal Electronic energy + Delta-G solvation = -28499.175651 eV Core-core repulsion = 24382.015696 eV Total energy + Delta-G solvation = -4117.159954 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.55197 -39.05866 -38.38984 -37.51772 -36.02682 -34.91355 -33.73604 -33.54099 -31.92247 -30.30666 -30.02207 -26.92335 -26.21418 -24.80945 -24.44794 -21.74953 -21.24170 -20.36627 -20.27333 -19.41043 -18.13716 -17.36340 -17.27821 -16.89937 -16.64263 -16.00530 -15.97458 -15.58749 -15.34862 -14.72380 -14.66891 -14.24098 -13.97243 -13.66967 -13.51905 -13.27314 -13.01914 -12.64573 -12.62628 -12.42935 -12.14491 -11.97506 -11.80994 -11.40835 -11.36246 -11.27794 -11.10825 -10.76545 -10.68619 -10.61712 -10.20995 -10.20103 -9.66223 -9.65575 -9.52247 -9.29585 -9.08348 -8.95884 -7.53710 -7.45052 -6.89762 -4.43344 1.81657 2.31826 2.57974 2.75654 2.80132 3.16074 3.22946 3.35750 3.36468 3.38994 3.61269 4.03038 4.44583 4.56660 4.72528 4.79428 4.95625 4.99571 5.11363 5.18492 5.21072 5.42210 5.43747 5.53914 5.71088 5.93615 6.02948 6.16602 6.23370 6.25506 6.29822 6.34310 6.53089 6.54028 6.64322 6.78512 6.79175 7.00739 7.26200 7.48135 7.72148 7.78905 7.86168 7.95541 7.96280 8.20036 8.40213 8.73247 8.77242 8.87334 10.12484 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.013106 B = 0.003262 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.841773 B = 8580.703154 C = 9638.338575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.152 4.152 3 C 0.090 3.910 4 O -0.384 6.384 5 C 0.059 3.941 6 C 0.165 3.835 7 H 0.139 0.861 8 N -0.719 5.719 9 C 0.525 3.475 10 O -0.518 6.518 11 C -0.072 4.072 12 C -0.166 4.166 13 C -0.068 4.068 14 C -0.241 4.241 15 C -0.080 4.080 16 C -0.233 4.233 17 C 0.109 3.891 18 C -0.445 4.445 19 H 0.089 0.911 20 C 0.086 3.914 21 N -0.812 5.812 22 Si 0.909 3.091 23 H -0.272 1.272 24 H -0.293 1.293 25 H -0.244 1.244 26 C 0.473 3.527 27 O -0.499 6.499 28 O -0.520 6.520 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.408 0.592 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.283 0.717 44 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.968 -9.309 -13.586 17.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.170 4.170 3 C 0.014 3.986 4 O -0.303 6.303 5 C -0.018 4.018 6 C 0.057 3.943 7 H 0.156 0.844 8 N -0.375 5.375 9 C 0.313 3.687 10 O -0.391 6.391 11 C -0.111 4.111 12 C -0.167 4.167 13 C -0.086 4.086 14 C -0.260 4.260 15 C -0.099 4.099 16 C -0.252 4.252 17 C 0.107 3.893 18 C -0.474 4.474 19 H 0.107 0.893 20 C -0.133 4.133 21 N -0.436 5.436 22 Si 0.735 3.265 23 H -0.198 1.198 24 H -0.220 1.220 25 H -0.167 1.167 26 C 0.312 3.688 27 O -0.385 6.385 28 O -0.331 6.331 29 H 0.122 0.878 30 H 0.117 0.883 31 H 0.133 0.867 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.244 0.756 37 H 0.100 0.900 38 H 0.121 0.879 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.117 0.883 43 H 0.094 0.906 44 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -5.423 -8.784 -13.283 16.823 hybrid contribution 0.031 -0.333 0.443 0.555 sum -5.392 -9.117 -12.840 16.645 Atomic orbital electron populations 1.23856 0.95544 1.02367 0.99769 1.22724 0.95646 0.98164 1.00497 1.21561 0.88668 0.96107 0.92294 1.87937 1.44921 1.36563 1.60916 1.22768 0.92354 0.88514 0.98156 1.20382 0.94040 0.95131 0.84744 0.84370 1.45861 1.18660 1.69401 1.03555 1.21245 0.86086 0.75309 0.86042 1.90689 1.18402 1.43293 1.86735 1.20272 0.99751 1.01901 0.89187 1.19060 1.02284 0.93282 1.02121 1.20469 0.95213 0.97101 0.95848 1.20343 1.05502 0.95245 1.04941 1.20600 0.97736 0.93501 0.98030 1.20995 1.01784 0.97657 1.04813 1.17490 0.90542 0.91349 0.89960 1.19392 1.26685 1.00285 1.01008 0.89314 1.26130 0.92001 0.93664 1.01461 1.69698 1.32326 1.02664 1.38939 0.86358 0.77186 0.80431 0.82482 1.19799 1.22030 1.16678 1.23932 0.77093 0.89251 0.78480 1.90703 1.59509 1.39349 1.48892 1.84497 1.62121 1.47458 1.39045 0.87797 0.88296 0.86662 0.92289 0.92098 0.90386 0.90363 0.75617 0.89958 0.87925 0.89006 0.89005 0.89023 0.88323 0.90649 0.73497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.23 14.31 29.02 0.42 -0.81 16 2 C -0.15 -1.24 9.89 -36.02 -0.36 -1.60 16 3 C 0.09 0.73 6.35 36.01 0.23 0.96 16 4 O -0.38 -4.12 9.54 -35.23 -0.34 -4.45 16 5 C 0.06 0.59 5.61 37.16 0.21 0.79 16 6 C 0.17 2.26 2.89 -69.08 -0.20 2.06 16 7 H 0.14 1.96 7.58 -51.93 -0.39 1.57 16 8 N -0.72 -11.19 4.59 -54.93 -0.25 -11.44 16 9 C 0.52 10.52 7.27 -10.98 -0.08 10.44 16 10 O -0.52 -12.54 15.70 5.56 0.09 -12.45 16 11 C -0.07 -1.41 5.19 -29.04 -0.15 -1.56 16 12 C -0.17 -3.91 4.43 -103.92 -0.46 -4.37 16 13 C -0.07 -1.53 9.66 -39.66 -0.38 -1.92 16 14 C -0.24 -5.37 10.05 -39.29 -0.39 -5.77 16 15 C -0.08 -1.85 10.02 -39.66 -0.40 -2.25 16 16 C -0.23 -5.90 7.17 -38.87 -0.28 -6.18 16 17 C 0.11 2.84 5.10 -106.82 -0.54 2.29 16 18 C -0.45 -11.91 8.55 -37.74 -0.32 -12.24 16 19 H 0.09 2.46 7.00 -52.49 -0.37 2.10 16 20 C 0.09 2.24 5.41 -17.34 -0.09 2.14 16 21 N -0.81 -21.46 13.93 55.55 0.77 -20.69 16 22 Si 0.91 20.94 24.52 -169.99 -4.17 16.78 16 23 H -0.27 -6.18 6.71 56.52 0.38 -5.81 16 24 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.24 -5.74 6.86 56.52 0.39 -5.35 16 26 C 0.47 7.00 7.18 36.01 0.26 7.26 16 27 O -0.50 -9.16 17.08 -18.75 -0.32 -9.48 16 28 O -0.52 -5.79 13.35 -39.26 -0.52 -6.31 16 29 H 0.10 0.60 8.06 -52.48 -0.42 0.18 16 30 H 0.10 0.60 7.90 -52.48 -0.41 0.18 16 31 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 32 H 0.06 0.42 7.86 -51.93 -0.41 0.01 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.41 5.42 8.38 -40.82 -0.34 5.08 16 37 H 0.08 1.39 8.05 -51.93 -0.42 0.97 16 38 H 0.10 1.96 7.13 -51.93 -0.37 1.59 16 39 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 40 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 41 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 42 H 0.10 2.48 4.77 -52.49 -0.25 2.23 16 43 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 44 H 0.41 2.92 9.10 45.56 0.41 3.34 16 LS Contribution 379.26 15.07 5.72 5.72 Total: -1.00 -34.69 379.26 -6.68 -41.37 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -5.10 Total: 11.72 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -2.55 Total: -10.75 kcal Atomic # 7 Polarization: -32.65 SS G_CDS: 0.52 Total: -32.13 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -1.09 Total: -32.70 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.17 Total: 16.78 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.69 -6.68 -41.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588856534.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.655 kcal (2) G-P(sol) polarization free energy of solvation -34.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds