Wall clock time and date at job start Tue Mar 31 2020 17:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.50082 * 2 1 4 4 C 1.53039 * 109.52644 * 120.08212 * 2 1 3 5 5 C 1.53046 * 109.53774 * 181.33068 * 4 2 1 6 6 C 1.53631 * 109.24263 * 298.51279 * 5 4 2 7 7 N 1.46919 * 108.54246 * 54.85567 * 6 5 4 8 8 C 1.34774 * 120.63405 * 126.37203 * 7 6 5 9 9 O 1.21586 * 120.00685 * 188.25343 * 8 7 6 10 10 C 1.47538 * 119.99491 * 8.25184 * 8 7 6 11 11 C 1.39666 * 120.19663 * 17.10190 * 10 8 7 12 12 C 1.37825 * 119.91726 * 180.02562 * 11 10 8 13 13 C 1.38573 * 120.32633 * 0.02562 * 12 11 10 14 14 C 1.38024 * 120.40001 * 359.71786 * 13 12 11 15 15 C 1.38830 * 120.07256 * 0.55438 * 14 13 12 16 16 O 1.35521 * 120.16386 * 179.72508 * 15 14 13 17 17 C 1.34808 * 116.99941 * 5.61663 * 16 15 14 18 18 H 1.08000 * 120.00258 * 354.95294 * 17 16 15 19 19 C 1.38693 * 120.00157 * 174.94144 * 17 16 15 20 20 N 1.31529 * 119.99985 * 359.73191 * 19 17 16 21 21 Si 1.86798 * 120.00416 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47229 * 90.00160 * 21 19 17 23 23 H 1.48500 * 109.47614 * 210.00427 * 21 19 17 24 24 H 1.48496 * 109.47050 * 330.00459 * 21 19 17 25 25 C 1.46928 * 118.74096 * 306.09429 * 7 6 5 26 26 H 1.09006 * 109.58609 * 294.07590 * 25 7 6 27 27 C 1.50696 * 109.58911 * 173.64873 * 25 7 6 28 28 O 1.20821 * 120.00303 * 300.68036 * 27 25 7 29 29 O 1.34236 * 119.99965 * 120.67968 * 27 25 7 30 30 H 1.09001 * 109.46696 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46838 * 300.06066 * 1 2 3 32 32 H 1.08993 * 109.47230 * 60.06427 * 1 2 3 33 33 H 1.08995 * 109.46256 * 301.35069 * 4 2 1 34 34 H 1.09001 * 109.46190 * 61.31504 * 4 2 1 35 35 H 1.08996 * 109.49650 * 58.58693 * 5 4 2 36 36 H 1.09000 * 109.49868 * 178.65393 * 5 4 2 37 37 H 1.09001 * 109.73545 * 295.11743 * 6 5 4 38 38 H 1.08992 * 109.66381 * 174.55246 * 6 5 4 39 39 H 1.08001 * 120.04081 * 0.04650 * 11 10 8 40 40 H 1.08010 * 119.83907 * 180.02562 * 12 11 10 41 41 H 1.08001 * 119.80193 * 179.97438 * 13 12 11 42 42 H 1.08004 * 119.96589 * 180.28813 * 14 13 12 43 43 H 0.96995 * 120.00184 * 179.97438 * 20 19 17 44 44 H 0.96699 * 116.99895 * 179.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0415 -0.7230 1.2481 5 6 3.5716 -0.6942 1.2653 6 6 4.1058 -1.4306 0.0273 7 7 3.5047 -0.8281 -1.1703 8 6 4.2806 -0.3849 -2.1793 9 8 3.7868 0.2450 -3.0945 10 6 5.7293 -0.6642 -2.1731 11 6 6.2486 -1.6635 -1.3471 12 6 7.6029 -1.9192 -1.3455 13 6 8.4537 -1.1889 -2.1597 14 6 7.9542 -0.2019 -2.9852 15 6 6.5935 0.0734 -2.9958 16 8 6.1018 1.0459 -3.8014 17 6 6.9675 1.6307 -4.6535 18 1 8.0166 1.3769 -4.6162 19 6 6.5109 2.5580 -5.5782 20 7 5.2324 2.8630 -5.6274 21 14 7.7102 3.3677 -6.7593 22 1 7.8118 2.5537 -7.9972 23 1 7.2259 4.7294 -7.1007 24 1 9.0467 3.4639 -6.1192 25 6 2.0413 -0.7234 -1.2499 26 1 1.6057 -1.7215 -1.2983 27 6 1.6569 0.0589 -2.4791 28 8 2.0473 1.1936 -2.6198 29 8 0.8806 -0.5049 -3.4180 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8895 32 1 -0.3633 0.5128 -0.8905 33 1 1.6590 -0.2247 2.1388 34 1 1.6980 -1.7573 1.2350 35 1 3.9162 0.3398 1.2533 36 1 3.9347 -1.1883 2.1664 37 1 3.8351 -2.4851 0.0810 38 1 5.1902 -1.3316 -0.0189 39 1 5.5896 -2.2354 -0.7106 40 1 8.0031 -2.6926 -0.7065 41 1 9.5137 -1.3961 -2.1515 42 1 8.6231 0.3599 -3.6203 43 1 4.9131 3.5118 -6.2738 44 1 0.6602 0.0362 -4.1885 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589327833.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:10 Heat of formation + Delta-G solvation = -100.640492 kcal Electronic energy + Delta-G solvation = -30391.552369 eV Core-core repulsion = 26275.753263 eV Total energy + Delta-G solvation = -4115.799106 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.35680 -40.95726 -39.79185 -38.50274 -38.14462 -36.89881 -35.09588 -34.34809 -33.08749 -32.02471 -30.65363 -28.46218 -27.35631 -27.16919 -24.85651 -23.70651 -23.55600 -22.22214 -21.55980 -20.42217 -19.96365 -19.06639 -18.56810 -18.14396 -17.35120 -17.07986 -16.67000 -16.41675 -16.33151 -15.95581 -15.79884 -15.49948 -15.42174 -14.85131 -14.72793 -14.56355 -14.41955 -14.12565 -13.89084 -13.73368 -13.49670 -13.37151 -13.04174 -12.79642 -12.69468 -12.59224 -12.47532 -12.34796 -12.17966 -12.07950 -11.93966 -11.60924 -11.43171 -11.28346 -11.05347 -10.84547 -10.26615 -9.77733 -9.60115 -9.03112 -8.46432 -6.18879 0.10557 0.70252 1.24738 1.27221 1.39793 1.47163 1.85933 2.11501 2.12420 2.21549 2.83923 3.17704 3.44015 3.54296 3.73262 3.87248 3.92163 3.97911 4.09721 4.16586 4.26178 4.35160 4.38330 4.52094 4.52463 4.61756 4.64079 4.77510 4.84491 4.86218 4.94001 5.04038 5.06569 5.13843 5.17239 5.22436 5.25202 5.46902 5.47871 5.52836 5.59826 5.69233 5.76502 5.91792 6.17525 6.37257 6.91489 7.07628 7.41250 7.78717 8.73581 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012343 B = 0.004851 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.967737 B = 5770.974332 C = 7531.639127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 H 0.043 0.957 4 C -0.102 4.102 5 C -0.137 4.137 6 C 0.057 3.943 7 N -0.606 5.606 8 C 0.534 3.466 9 O -0.540 6.540 10 C -0.241 4.241 11 C -0.064 4.064 12 C -0.196 4.196 13 C -0.042 4.042 14 C -0.259 4.259 15 C 0.145 3.855 16 O -0.195 6.195 17 C -0.427 4.427 18 H 0.107 0.893 19 C -0.026 4.026 20 N -0.906 5.906 21 Si 1.024 2.976 22 H -0.261 1.261 23 H -0.273 1.273 24 H -0.246 1.246 25 C 0.166 3.834 26 H 0.131 0.869 27 C 0.472 3.528 28 O -0.525 6.525 29 O -0.522 6.522 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.029 0.971 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.038 0.962 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.131 0.869 39 H 0.201 0.799 40 H 0.172 0.828 41 H 0.154 0.846 42 H 0.120 0.880 43 H 0.268 0.732 44 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.331 -14.764 17.254 22.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.061 0.939 4 C -0.139 4.139 5 C -0.175 4.175 6 C -0.062 4.062 7 N -0.344 5.344 8 C 0.325 3.675 9 O -0.418 6.418 10 C -0.245 4.245 11 C -0.081 4.081 12 C -0.214 4.214 13 C -0.060 4.060 14 C -0.278 4.278 15 C 0.090 3.910 16 O -0.098 6.098 17 C -0.503 4.503 18 H 0.124 0.876 19 C -0.224 4.224 20 N -0.542 5.542 21 Si 0.842 3.158 22 H -0.186 1.186 23 H -0.198 1.198 24 H -0.169 1.169 25 C 0.062 3.938 26 H 0.148 0.852 27 C 0.314 3.686 28 O -0.412 6.412 29 O -0.335 6.335 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.048 0.952 33 H 0.108 0.892 34 H 0.119 0.881 35 H 0.057 0.943 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.148 0.852 39 H 0.217 0.783 40 H 0.189 0.811 41 H 0.172 0.828 42 H 0.138 0.862 43 H 0.077 0.923 44 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -3.774 -14.093 16.911 22.334 hybrid contribution 0.151 1.842 -2.029 2.744 sum -3.623 -12.250 14.882 19.614 Atomic orbital electron populations 1.21828 0.92237 1.03959 1.02047 1.21539 0.97636 0.98791 0.93517 0.93859 1.21602 0.94986 1.02165 0.95175 1.22106 0.96342 1.00499 0.98521 1.23593 1.01747 0.98764 0.82103 1.47924 1.03848 1.63107 1.19533 1.18902 0.87688 0.78245 0.82617 1.91067 1.73875 1.38560 1.38290 1.19219 0.91259 1.05936 1.08122 1.22463 0.97604 0.93933 0.94107 1.21302 0.92559 1.03758 1.03821 1.21475 1.01235 0.91485 0.91773 1.21284 0.93566 1.05594 1.07354 1.20125 0.93354 0.87563 0.89950 1.84163 1.38234 1.43148 1.44211 1.22011 0.91309 1.23268 1.13663 0.87618 1.26823 0.98940 0.97328 0.99339 1.70378 1.16141 1.32139 1.35512 0.84546 0.77094 0.77170 0.77014 1.18613 1.19796 1.16870 1.20974 0.82128 1.00564 0.90145 0.85176 1.23411 0.74138 0.86303 0.84703 1.90798 1.49677 1.23217 1.77490 1.84351 1.64946 1.50612 1.33549 0.89231 0.89886 0.95157 0.89218 0.88108 0.94276 0.86201 0.86414 0.85198 0.78334 0.81102 0.82839 0.86247 0.92271 0.72490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.02 71.98 0.65 -2.07 16 2 C -0.10 -2.31 2.30 -10.71 -0.02 -2.33 16 3 H 0.04 1.43 7.97 -2.39 -0.02 1.41 16 4 C -0.10 -1.47 5.17 30.62 0.16 -1.31 16 5 C -0.14 -2.21 6.10 30.82 0.19 -2.02 16 6 C 0.06 1.12 4.70 86.51 0.41 1.53 16 7 N -0.61 -20.31 2.97 -802.08 -2.38 -22.69 16 8 C 0.53 25.62 7.39 86.70 0.64 26.26 16 9 O -0.54 -33.20 10.50 26.70 0.28 -32.92 16 10 C -0.24 -10.81 5.73 -19.98 -0.11 -10.92 16 11 C -0.06 -1.90 7.68 22.52 0.17 -1.72 16 12 C -0.20 -5.02 10.02 22.25 0.22 -4.79 16 13 C -0.04 -1.29 10.03 22.30 0.22 -1.07 16 14 C -0.26 -11.38 9.16 22.36 0.20 -11.18 16 15 C 0.14 7.77 6.64 22.91 0.15 7.92 16 16 O -0.19 -13.00 7.99 0.18 0.00 -13.00 16 17 C -0.43 -26.98 9.49 67.93 0.64 -26.34 16 18 H 0.11 5.99 5.21 -2.91 -0.02 5.97 16 19 C -0.03 -1.58 5.49 84.85 0.47 -1.12 16 20 N -0.91 -62.45 13.67 21.62 0.30 -62.15 16 21 Si 1.02 46.30 29.55 68.60 2.03 48.33 16 22 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.25 -10.04 7.11 99.48 0.71 -9.34 16 25 C 0.17 5.08 2.81 44.23 0.12 5.21 16 26 H 0.13 3.00 8.14 -2.38 -0.02 2.98 16 27 C 0.47 19.83 4.31 71.23 0.31 20.14 16 28 O -0.52 -28.93 14.68 30.06 0.44 -28.49 16 29 O -0.52 -18.73 13.42 -51.47 -0.69 -19.42 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.03 0.72 7.41 -2.39 -0.02 0.70 16 33 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.12 1.31 8.02 -2.39 -0.02 1.30 16 38 H 0.13 2.68 3.51 -14.68 -0.05 2.63 16 39 H 0.20 3.86 4.22 -2.91 -0.01 3.84 16 40 H 0.17 2.57 8.06 -2.91 -0.02 2.54 16 41 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 42 H 0.12 5.38 5.64 -2.91 -0.02 5.36 16 43 H 0.27 17.01 8.31 -92.71 -0.77 16.24 16 44 H 0.42 13.19 9.10 -74.06 -0.67 12.51 16 Total: -1.00 -104.86 352.64 4.74 -100.12 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: 0.34 Total: 34.04 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 4.42 Total: -3.81 kcal Atomic # 7 Polarization: -82.76 SS G_CDS: -2.08 Total: -84.84 kcal Atomic # 8 Polarization: -93.86 SS G_CDS: 0.03 Total: -93.83 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -104.86 4.74 -100.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589327833.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.524 kcal (2) G-P(sol) polarization free energy of solvation -104.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds