Wall clock time and date at job start Tue Mar 31 2020 17:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.50055 * 2 1 4 4 C 1.53040 * 109.52325 * 239.91336 * 2 1 3 5 5 C 1.53039 * 109.53914 * 301.40076 * 4 2 1 6 6 C 1.53625 * 109.24150 * 298.50964 * 5 4 2 7 7 N 1.46925 * 108.54398 * 54.85793 * 6 5 4 8 8 C 1.34772 * 120.63087 * 126.36736 * 7 6 5 9 9 O 1.21589 * 120.00199 * 241.37871 * 8 7 6 10 10 C 1.47536 * 119.99970 * 61.65923 * 8 7 6 11 11 C 1.39674 * 120.19835 * 15.77652 * 10 8 7 12 12 C 1.37821 * 119.91885 * 180.02562 * 11 10 8 13 13 C 1.38573 * 120.32756 * 359.97438 * 12 11 10 14 14 C 1.38028 * 120.39878 * 0.02562 * 13 12 11 15 15 C 1.38829 * 120.07292 * 359.72598 * 14 13 12 16 16 O 1.35524 * 120.16605 * 180.27650 * 15 14 13 17 17 C 1.34815 * 116.99500 * 8.37059 * 16 15 14 18 18 H 1.08005 * 120.00255 * 354.62953 * 17 16 15 19 19 C 1.38695 * 119.99779 * 174.62822 * 17 16 15 20 20 N 1.31515 * 120.00321 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99979 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47054 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47114 * 119.99804 * 21 19 17 24 24 H 1.48498 * 109.46888 * 240.00245 * 21 19 17 25 25 C 1.46925 * 118.73537 * 306.09356 * 7 6 5 26 26 H 1.09001 * 109.59179 * 294.07145 * 25 7 6 27 27 C 1.50704 * 109.58361 * 173.64849 * 25 7 6 28 28 O 1.20824 * 120.00210 * 315.14732 * 27 25 7 29 29 O 1.34227 * 119.99963 * 135.15354 * 27 25 7 30 30 H 1.09003 * 109.47415 * 299.93630 * 1 2 3 31 31 H 1.09003 * 109.47055 * 59.93949 * 1 2 3 32 32 H 1.09007 * 109.47264 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46050 * 61.42088 * 4 2 1 34 34 H 1.09002 * 109.46019 * 181.38022 * 4 2 1 35 35 H 1.08990 * 109.49932 * 58.58864 * 5 4 2 36 36 H 1.09003 * 109.49461 * 178.65212 * 5 4 2 37 37 H 1.09005 * 109.73904 * 295.12140 * 6 5 4 38 38 H 1.09001 * 109.66534 * 174.55083 * 6 5 4 39 39 H 1.07996 * 120.03458 * 359.97438 * 11 10 8 40 40 H 1.08004 * 119.83742 * 179.97438 * 12 11 10 41 41 H 1.08002 * 119.79955 * 180.02562 * 13 12 11 42 42 H 1.08001 * 119.96358 * 180.02562 * 14 13 12 43 43 H 0.96996 * 120.00583 * 179.97438 * 20 19 17 44 44 H 0.96710 * 116.99701 * 179.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0414 -0.7231 -1.2481 5 6 1.5042 -2.1560 -1.2657 6 6 2.0201 -2.9053 -0.0277 7 7 1.6521 -2.1380 1.1700 8 6 0.9753 -2.7220 2.1785 9 8 -0.1261 -2.3116 2.4896 10 6 1.5736 -3.8555 2.9093 11 6 2.9406 -4.1199 2.7985 12 6 3.4933 -5.1806 3.4833 13 6 2.6994 -5.9872 4.2829 14 6 1.3470 -5.7380 4.4021 15 6 0.7739 -4.6709 3.7237 16 8 -0.5527 -4.4212 3.8438 17 6 -1.2284 -5.1335 4.7676 18 1 -0.7308 -5.9237 5.3104 19 6 -2.5625 -4.8516 5.0212 20 7 -3.1686 -3.8898 4.3600 21 14 -3.4986 -5.8382 6.3019 22 1 -2.5964 -6.8546 6.9003 23 1 -3.9914 -4.9268 7.3658 24 1 -4.6518 -6.5169 5.6580 25 6 2.0412 -0.7235 1.2498 26 1 3.1274 -0.6454 1.2986 27 6 1.4315 -0.1004 2.4791 28 8 0.2742 -0.3131 2.7535 29 8 2.1741 0.6909 3.2692 30 1 -0.3634 0.5128 0.8906 31 1 -0.3633 0.5148 -0.8895 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6994 -0.1961 -2.1388 34 1 3.1311 -0.7440 -1.2347 35 1 0.4146 -2.1362 -1.2541 36 1 1.8493 -2.6628 -2.1669 37 1 3.1046 -3.0016 -0.0811 38 1 1.5652 -3.8948 0.0182 39 1 3.5634 -3.4944 2.1763 40 1 4.5504 -5.3841 3.3963 41 1 3.1415 -6.8158 4.8161 42 1 0.7350 -6.3709 5.0275 43 1 -4.1017 -3.6928 4.5370 44 1 1.7390 1.0680 4.0462 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589327834.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:14 Heat of formation + Delta-G solvation = -95.372272 kcal Electronic energy + Delta-G solvation = -30549.385428 eV Core-core repulsion = 26433.814769 eV Total energy + Delta-G solvation = -4115.570659 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.91587 -39.27604 -38.43760 -37.00334 -36.30459 -35.67530 -33.20436 -32.32375 -31.78979 -30.30313 -28.88699 -27.33247 -25.77832 -25.29466 -23.63979 -22.73989 -21.66720 -21.15915 -19.89076 -18.45703 -17.98652 -17.78240 -17.24430 -16.40126 -16.05137 -15.57476 -15.26630 -14.96735 -14.63395 -14.50766 -14.10273 -13.91592 -13.81591 -13.67649 -13.44219 -13.25827 -12.92387 -12.74771 -12.52350 -12.30874 -11.76634 -11.72180 -11.67843 -11.34465 -11.20493 -11.17788 -11.01300 -10.93675 -10.84252 -10.70202 -10.61862 -10.42721 -10.33614 -9.94875 -9.47963 -8.86378 -8.72167 -8.20643 -7.90681 -7.28451 -6.42346 -4.02686 1.70129 2.35455 2.41258 3.06405 3.12030 3.13612 3.18980 3.39914 3.63864 3.94757 4.58371 4.63603 4.79755 4.94071 5.07429 5.08893 5.17321 5.23710 5.43861 5.45982 5.53275 5.58970 5.59788 5.65325 5.78644 5.80007 5.87286 5.93005 5.99141 6.09315 6.12081 6.19614 6.26628 6.31299 6.63198 6.70432 6.74462 6.83784 6.97012 7.11817 7.19981 7.28402 7.31551 7.73842 7.91878 8.01323 8.21119 8.91782 8.98225 9.68586 10.71408 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012541 B = 0.004670 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.197681 B = 5994.601935 C = 6931.459855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 H 0.078 0.922 4 C -0.105 4.105 5 C -0.142 4.142 6 C 0.143 3.857 7 N -0.673 5.673 8 C 0.556 3.444 9 O -0.401 6.401 10 C -0.235 4.235 11 C -0.027 4.027 12 C -0.233 4.233 13 C -0.051 4.051 14 C -0.240 4.240 15 C 0.186 3.814 16 O -0.131 6.131 17 C -0.402 4.402 18 H 0.094 0.906 19 C 0.044 3.956 20 N -0.832 5.832 21 Si 0.940 3.060 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.275 1.275 25 C 0.190 3.810 26 H 0.090 0.910 27 C 0.439 3.561 28 O -0.435 6.435 29 O -0.525 6.525 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.130 0.870 43 H 0.270 0.730 44 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.240 5.000 -8.449 16.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 H 0.097 0.903 4 C -0.143 4.143 5 C -0.180 4.180 6 C 0.020 3.980 7 N -0.418 5.418 8 C 0.345 3.655 9 O -0.266 6.266 10 C -0.241 4.241 11 C -0.046 4.046 12 C -0.252 4.252 13 C -0.070 4.070 14 C -0.259 4.259 15 C 0.127 3.873 16 O -0.030 6.030 17 C -0.477 4.477 18 H 0.111 0.889 19 C -0.163 4.163 20 N -0.463 5.463 21 Si 0.764 3.236 22 H -0.190 1.190 23 H -0.200 1.200 24 H -0.200 1.200 25 C 0.085 3.915 26 H 0.108 0.892 27 C 0.277 3.723 28 O -0.316 6.316 29 O -0.338 6.338 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.133 0.867 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.147 0.853 43 H 0.081 0.919 44 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 11.924 5.261 -8.601 15.615 hybrid contribution -0.543 -0.371 1.245 1.408 sum 11.381 4.890 -7.356 14.406 Atomic orbital electron populations 1.21933 0.93380 1.03907 1.01374 1.21463 0.97995 0.98720 0.93587 0.90342 1.21452 1.00268 0.95821 0.96716 1.22110 1.02283 0.95785 0.97842 1.21385 0.98950 0.94647 0.82974 1.47011 1.66907 1.07563 1.20270 1.18331 0.84409 0.83248 0.79489 1.90997 1.16000 1.57383 1.62270 1.19278 0.93682 1.02063 1.09062 1.20818 0.92750 0.95182 0.95805 1.20497 0.99015 1.00220 1.05497 1.20896 0.93236 0.97179 0.95645 1.21141 0.95758 1.01616 1.07390 1.19357 0.85074 0.91271 0.91581 1.84108 1.13577 1.55431 1.49886 1.21493 0.93725 1.15897 1.16615 0.88912 1.25376 0.96044 0.96771 0.98151 1.70131 1.11587 1.26792 1.37833 0.85676 0.79439 0.79008 0.79452 1.18994 1.20039 1.20036 1.20244 0.98624 0.82786 0.89889 0.89239 1.23394 0.85926 0.78286 0.84729 1.91051 1.17000 1.53379 1.70139 1.84461 1.48271 1.61453 1.39641 0.91933 0.93365 0.90885 0.91499 0.91674 0.90779 0.91061 0.92388 0.90139 0.86679 0.87409 0.87318 0.85256 0.91941 0.73364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 8.03 37.16 0.30 -1.94 16 2 C -0.10 -1.18 2.80 -90.50 -0.25 -1.44 16 3 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.11 -1.01 5.43 -26.69 -0.14 -1.16 16 5 C -0.14 -1.55 5.75 -26.39 -0.15 -1.70 16 6 C 0.14 1.84 5.53 -3.49 -0.02 1.82 16 7 N -0.67 -11.08 1.76 -167.49 -0.30 -11.38 16 8 C 0.56 12.27 5.43 -12.47 -0.07 12.20 16 9 O -0.40 -10.99 12.35 -26.81 -0.33 -11.32 16 10 C -0.24 -5.18 5.77 -104.81 -0.60 -5.78 16 11 C -0.03 -0.48 9.15 -39.20 -0.36 -0.84 16 12 C -0.23 -3.91 10.02 -39.61 -0.40 -4.31 16 13 C -0.05 -0.92 10.03 -39.53 -0.40 -1.31 16 14 C -0.24 -5.24 9.15 -39.44 -0.36 -5.60 16 15 C 0.19 4.68 6.63 -38.60 -0.26 4.42 16 16 O -0.13 -3.91 7.97 -20.45 -0.16 -4.07 16 17 C -0.40 -11.51 9.49 30.90 0.29 -11.22 16 18 H 0.09 2.43 5.23 -52.48 -0.27 2.16 16 19 C 0.04 1.25 5.49 -17.52 -0.10 1.16 16 20 N -0.83 -25.51 13.67 55.48 0.76 -24.76 16 21 Si 0.94 20.89 29.55 -169.99 -5.02 15.86 16 22 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 24 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 25 C 0.19 2.72 3.08 -68.75 -0.21 2.51 16 26 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 27 C 0.44 7.53 6.16 36.01 0.22 7.75 16 28 O -0.43 -9.63 11.43 -27.18 -0.31 -9.94 16 29 O -0.53 -7.20 13.42 -39.25 -0.53 -7.72 16 30 H 0.06 1.10 6.02 -51.93 -0.31 0.78 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.31 5.97 -51.93 -0.31 1.00 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.97 6.34 -51.93 -0.33 0.64 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.60 8.02 -51.93 -0.42 0.19 16 38 H 0.08 1.14 7.93 -51.93 -0.41 0.73 16 39 H 0.12 1.70 7.17 -52.49 -0.38 1.32 16 40 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 41 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 42 H 0.13 2.80 5.68 -52.49 -0.30 2.50 16 43 H 0.27 7.58 8.31 -40.82 -0.34 7.25 16 44 H 0.41 4.22 9.10 45.56 0.41 4.64 16 LS Contribution 354.16 15.07 5.34 5.34 Total: -1.00 -36.79 354.16 -7.89 -44.68 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -4.83 Total: 8.73 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -2.51 Total: -5.42 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.46 Total: -36.13 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -1.33 Total: -33.06 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.79 -7.89 -44.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589327834.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.693 kcal (2) G-P(sol) polarization free energy of solvation -36.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds