Wall clock time and date at job start Tue Mar 31 2020 17:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.50055 * 2 1 4 4 C 1.53040 * 109.52325 * 239.91336 * 2 1 3 5 5 C 1.53039 * 109.53914 * 301.40076 * 4 2 1 6 6 C 1.53625 * 109.24150 * 298.50964 * 5 4 2 7 7 N 1.46925 * 108.54398 * 54.85793 * 6 5 4 8 8 C 1.34772 * 120.63087 * 126.36736 * 7 6 5 9 9 O 1.21589 * 120.00199 * 241.37871 * 8 7 6 10 10 C 1.47536 * 119.99970 * 61.65923 * 8 7 6 11 11 C 1.39674 * 120.19835 * 15.77652 * 10 8 7 12 12 C 1.37821 * 119.91885 * 180.02562 * 11 10 8 13 13 C 1.38573 * 120.32756 * 359.97438 * 12 11 10 14 14 C 1.38028 * 120.39878 * 0.02562 * 13 12 11 15 15 C 1.38829 * 120.07292 * 359.72598 * 14 13 12 16 16 O 1.35524 * 120.16605 * 180.27650 * 15 14 13 17 17 C 1.34815 * 116.99500 * 8.37059 * 16 15 14 18 18 H 1.08005 * 120.00255 * 354.62953 * 17 16 15 19 19 C 1.38695 * 119.99779 * 174.62822 * 17 16 15 20 20 N 1.31515 * 120.00321 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99979 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47054 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47114 * 119.99804 * 21 19 17 24 24 H 1.48498 * 109.46888 * 240.00245 * 21 19 17 25 25 C 1.46925 * 118.73537 * 306.09356 * 7 6 5 26 26 H 1.09001 * 109.59179 * 294.07145 * 25 7 6 27 27 C 1.50704 * 109.58361 * 173.64849 * 25 7 6 28 28 O 1.20824 * 120.00210 * 315.14732 * 27 25 7 29 29 O 1.34227 * 119.99963 * 135.15354 * 27 25 7 30 30 H 1.09003 * 109.47415 * 299.93630 * 1 2 3 31 31 H 1.09003 * 109.47055 * 59.93949 * 1 2 3 32 32 H 1.09007 * 109.47264 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46050 * 61.42088 * 4 2 1 34 34 H 1.09002 * 109.46019 * 181.38022 * 4 2 1 35 35 H 1.08990 * 109.49932 * 58.58864 * 5 4 2 36 36 H 1.09003 * 109.49461 * 178.65212 * 5 4 2 37 37 H 1.09005 * 109.73904 * 295.12140 * 6 5 4 38 38 H 1.09001 * 109.66534 * 174.55083 * 6 5 4 39 39 H 1.07996 * 120.03458 * 359.97438 * 11 10 8 40 40 H 1.08004 * 119.83742 * 179.97438 * 12 11 10 41 41 H 1.08002 * 119.79955 * 180.02562 * 13 12 11 42 42 H 1.08001 * 119.96358 * 180.02562 * 14 13 12 43 43 H 0.96996 * 120.00583 * 179.97438 * 20 19 17 44 44 H 0.96710 * 116.99701 * 179.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0414 -0.7231 -1.2481 5 6 1.5042 -2.1560 -1.2657 6 6 2.0201 -2.9053 -0.0277 7 7 1.6521 -2.1380 1.1700 8 6 0.9753 -2.7220 2.1785 9 8 -0.1261 -2.3116 2.4896 10 6 1.5736 -3.8555 2.9093 11 6 2.9406 -4.1199 2.7985 12 6 3.4933 -5.1806 3.4833 13 6 2.6994 -5.9872 4.2829 14 6 1.3470 -5.7380 4.4021 15 6 0.7739 -4.6709 3.7237 16 8 -0.5527 -4.4212 3.8438 17 6 -1.2284 -5.1335 4.7676 18 1 -0.7308 -5.9237 5.3104 19 6 -2.5625 -4.8516 5.0212 20 7 -3.1686 -3.8898 4.3600 21 14 -3.4986 -5.8382 6.3019 22 1 -2.5964 -6.8546 6.9003 23 1 -3.9914 -4.9268 7.3658 24 1 -4.6518 -6.5169 5.6580 25 6 2.0412 -0.7235 1.2498 26 1 3.1274 -0.6454 1.2986 27 6 1.4315 -0.1004 2.4791 28 8 0.2742 -0.3131 2.7535 29 8 2.1741 0.6909 3.2692 30 1 -0.3634 0.5128 0.8906 31 1 -0.3633 0.5148 -0.8895 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6994 -0.1961 -2.1388 34 1 3.1311 -0.7440 -1.2347 35 1 0.4146 -2.1362 -1.2541 36 1 1.8493 -2.6628 -2.1669 37 1 3.1046 -3.0016 -0.0811 38 1 1.5652 -3.8948 0.0182 39 1 3.5634 -3.4944 2.1763 40 1 4.5504 -5.3841 3.3963 41 1 3.1415 -6.8158 4.8161 42 1 0.7350 -6.3709 5.0275 43 1 -4.1017 -3.6928 4.5370 44 1 1.7390 1.0680 4.0462 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589327834.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:13 Heat of formation + Delta-G solvation = -121.001252 kcal Electronic energy + Delta-G solvation = -30550.496784 eV Core-core repulsion = 26433.814769 eV Total energy + Delta-G solvation = -4116.682015 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.24755 -40.91644 -39.83088 -38.49222 -38.00300 -37.00458 -34.52814 -34.33143 -32.82782 -31.86241 -30.56069 -28.55640 -27.43731 -26.76529 -24.94469 -24.06355 -23.21287 -22.51646 -21.20868 -19.87582 -19.67813 -19.10503 -18.70685 -18.07106 -17.37916 -16.92369 -16.65025 -16.32590 -16.15682 -16.13385 -15.57020 -15.36761 -15.35271 -15.11040 -14.87014 -14.39037 -14.24617 -14.15122 -14.10257 -13.72357 -13.56749 -13.04939 -12.92464 -12.88843 -12.69482 -12.57962 -12.35042 -12.30299 -12.13300 -12.04213 -12.01974 -11.75601 -11.43758 -11.30926 -11.13728 -10.86797 -10.34932 -9.79406 -9.17309 -9.03524 -8.47107 -6.18503 0.09725 0.73277 1.11363 1.28011 1.39152 1.48323 1.82137 1.92068 2.12635 2.30814 2.84213 3.18103 3.48604 3.61901 3.85275 3.96668 4.04605 4.12771 4.17112 4.20556 4.29341 4.35406 4.50648 4.56753 4.62003 4.63472 4.70084 4.78255 4.90717 4.99313 5.01978 5.05621 5.10844 5.16553 5.21836 5.28336 5.34826 5.52790 5.57748 5.61074 5.65938 5.70379 5.93271 6.04251 6.19533 6.55819 6.91968 6.96585 7.35507 7.78142 8.73496 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012541 B = 0.004670 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.197681 B = 5994.601935 C = 6931.459855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 H 0.108 0.892 4 C -0.095 4.095 5 C -0.140 4.140 6 C 0.136 3.864 7 N -0.670 5.670 8 C 0.558 3.442 9 O -0.470 6.470 10 C -0.251 4.251 11 C -0.017 4.017 12 C -0.202 4.202 13 C -0.041 4.041 14 C -0.260 4.260 15 C 0.144 3.856 16 O -0.196 6.196 17 C -0.423 4.423 18 H 0.105 0.895 19 C -0.024 4.024 20 N -0.907 5.907 21 Si 1.022 2.978 22 H -0.244 1.244 23 H -0.271 1.271 24 H -0.267 1.267 25 C 0.185 3.815 26 H 0.137 0.863 27 C 0.435 3.565 28 O -0.496 6.496 29 O -0.512 6.512 30 H 0.026 0.974 31 H 0.068 0.932 32 H 0.032 0.968 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.037 0.963 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.055 0.945 39 H 0.158 0.842 40 H 0.164 0.836 41 H 0.152 0.848 42 H 0.119 0.881 43 H 0.269 0.731 44 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.312 4.269 -9.783 22.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 H 0.126 0.874 4 C -0.133 4.133 5 C -0.178 4.178 6 C 0.015 3.985 7 N -0.415 5.415 8 C 0.349 3.651 9 O -0.340 6.340 10 C -0.257 4.257 11 C -0.035 4.035 12 C -0.220 4.220 13 C -0.059 4.059 14 C -0.279 4.279 15 C 0.090 3.910 16 O -0.100 6.100 17 C -0.499 4.499 18 H 0.122 0.878 19 C -0.223 4.223 20 N -0.543 5.543 21 Si 0.840 3.160 22 H -0.167 1.167 23 H -0.196 1.196 24 H -0.192 1.192 25 C 0.081 3.919 26 H 0.154 0.846 27 C 0.275 3.725 28 O -0.381 6.381 29 O -0.325 6.325 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.103 0.897 34 H 0.120 0.880 35 H 0.055 0.945 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.074 0.926 39 H 0.176 0.824 40 H 0.181 0.819 41 H 0.170 0.830 42 H 0.137 0.863 43 H 0.078 0.922 44 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 18.132 4.521 -9.969 21.180 hybrid contribution -1.967 -0.106 1.536 2.498 sum 16.164 4.415 -8.433 18.759 Atomic orbital electron populations 1.21830 0.96593 1.01009 1.00534 1.21559 0.95060 1.00643 0.93983 0.87399 1.21473 1.02245 0.93999 0.95548 1.22103 1.00190 0.97390 0.98110 1.21721 1.01389 0.93362 0.82012 1.46981 1.65928 1.08751 1.19841 1.18649 0.83793 0.82672 0.80027 1.91004 1.18989 1.59349 1.64633 1.19790 0.95612 1.01742 1.08545 1.21298 0.90701 0.95823 0.95711 1.21200 1.01337 0.97631 1.01812 1.21418 0.91285 0.98113 0.95077 1.21275 0.97873 1.01051 1.07739 1.20182 0.84594 0.93110 0.93128 1.84120 1.15951 1.57824 1.52080 1.22010 0.94448 1.16280 1.17176 0.87759 1.26767 0.96931 0.97982 1.00605 1.70340 1.11943 1.30503 1.41516 0.84509 0.77879 0.77504 0.76069 1.16735 1.19615 1.19169 1.20750 1.00617 0.81282 0.89244 0.84577 1.24217 0.85311 0.77561 0.85456 1.91075 1.19854 1.55495 1.71713 1.84424 1.47514 1.60642 1.39932 0.95524 0.91291 0.94894 0.89712 0.87965 0.94452 0.87835 0.87716 0.92627 0.82435 0.81882 0.83004 0.86308 0.92208 0.71956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.49 8.03 71.98 0.58 -3.91 16 2 C -0.09 -2.01 2.80 -10.72 -0.03 -2.04 16 3 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 4 C -0.10 -1.38 5.43 30.62 0.17 -1.22 16 5 C -0.14 -2.69 5.75 30.82 0.18 -2.51 16 6 C 0.14 3.14 5.53 86.51 0.48 3.62 16 7 N -0.67 -21.51 1.76 -802.07 -1.41 -22.92 16 8 C 0.56 25.85 5.43 86.70 0.47 26.32 16 9 O -0.47 -28.46 12.35 26.70 0.33 -28.13 16 10 C -0.25 -11.21 5.77 -19.98 -0.12 -11.32 16 11 C -0.02 -0.54 9.15 22.52 0.21 -0.33 16 12 C -0.20 -5.52 10.02 22.25 0.22 -5.29 16 13 C -0.04 -1.31 10.03 22.30 0.22 -1.09 16 14 C -0.26 -11.46 9.15 22.36 0.20 -11.26 16 15 C 0.14 7.65 6.63 22.91 0.15 7.80 16 16 O -0.20 -12.85 7.97 0.19 0.00 -12.85 16 17 C -0.42 -26.39 9.49 67.93 0.64 -25.74 16 18 H 0.11 5.87 5.23 -2.91 -0.02 5.85 16 19 C -0.02 -1.48 5.49 84.85 0.47 -1.01 16 20 N -0.91 -61.49 13.67 21.62 0.30 -61.20 16 21 Si 1.02 45.84 29.55 68.60 2.03 47.87 16 22 H -0.24 -9.88 7.11 99.48 0.71 -9.17 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 25 C 0.18 4.88 3.08 44.23 0.14 5.02 16 26 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 27 C 0.43 15.15 6.16 71.24 0.44 15.59 16 28 O -0.50 -24.00 11.43 30.03 0.34 -23.65 16 29 O -0.51 -13.59 13.42 -51.39 -0.69 -14.28 16 30 H 0.03 1.00 6.02 -2.39 -0.01 0.99 16 31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.03 1.29 5.97 -2.38 -0.01 1.27 16 33 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.04 1.00 6.34 -2.39 -0.02 0.98 16 36 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.10 1.50 8.02 -2.38 -0.02 1.48 16 38 H 0.06 1.55 7.93 -2.39 -0.02 1.53 16 39 H 0.16 3.60 7.17 -2.91 -0.02 3.58 16 40 H 0.16 2.91 8.06 -2.91 -0.02 2.88 16 41 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 42 H 0.12 5.35 5.68 -2.91 -0.02 5.34 16 43 H 0.27 16.74 8.31 -92.71 -0.77 15.97 16 44 H 0.42 8.84 9.10 -74.05 -0.67 8.17 16 Total: -1.00 -98.47 354.16 5.69 -92.78 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: 0.38 Total: 29.78 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: 4.42 Total: -7.39 kcal Atomic # 7 Polarization: -83.00 SS G_CDS: -1.12 Total: -84.12 kcal Atomic # 8 Polarization: -78.90 SS G_CDS: -0.02 Total: -78.91 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -98.47 5.69 -92.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589327834.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.223 kcal (2) G-P(sol) polarization free energy of solvation -98.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds