Wall clock time and date at job start Tue Mar 31 2020 17:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.50030 * 2 1 4 4 C 1.53047 * 109.52389 * 120.08123 * 2 1 3 5 5 C 1.53035 * 109.53657 * 58.60152 * 4 2 1 6 6 C 1.53188 * 109.31502 * 61.36882 * 5 4 2 7 7 N 1.46926 * 108.77368 * 305.36298 * 6 5 4 8 8 C 1.34782 * 120.63104 * 233.60968 * 7 6 5 9 9 O 1.21590 * 119.99883 * 187.00283 * 8 7 6 10 10 C 1.47533 * 119.99707 * 7.00659 * 8 7 6 11 11 C 1.39665 * 120.20376 * 55.51672 * 10 8 7 12 12 C 1.37820 * 119.92132 * 179.97438 * 11 10 8 13 13 C 1.38570 * 120.32568 * 359.97438 * 12 11 10 14 14 C 1.38023 * 120.39990 * 0.02785 * 13 12 11 15 15 C 1.38830 * 120.07452 * 359.73640 * 14 13 12 16 16 O 1.35525 * 120.16479 * 180.27571 * 15 14 13 17 17 C 1.34810 * 116.99934 * 5.83095 * 16 15 14 18 18 H 1.08006 * 119.99905 * 4.56288 * 17 16 15 19 19 C 1.38698 * 120.00155 * 184.55308 * 17 16 15 20 20 N 1.31523 * 119.99842 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00151 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47032 * 90.00451 * 21 19 17 23 23 H 1.48493 * 109.47300 * 210.00120 * 21 19 17 24 24 H 1.48504 * 109.47453 * 330.00682 * 21 19 17 25 25 C 1.46925 * 118.73954 * 53.60858 * 7 6 5 26 26 H 1.08997 * 109.58687 * 66.18220 * 25 7 6 27 27 C 1.50697 * 109.58770 * 186.60562 * 25 7 6 28 28 O 1.20826 * 120.00169 * 71.98591 * 27 25 7 29 29 O 1.34236 * 120.00051 * 251.99003 * 27 25 7 30 30 H 1.08993 * 109.47128 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46848 * 300.06699 * 1 2 3 32 32 H 1.09001 * 109.46593 * 60.06178 * 1 2 3 33 33 H 1.08997 * 109.45799 * 178.62344 * 4 2 1 34 34 H 1.08997 * 109.45407 * 298.57574 * 4 2 1 35 35 H 1.09003 * 109.49763 * 181.32186 * 5 4 2 36 36 H 1.09000 * 109.50039 * 301.41441 * 5 4 2 37 37 H 1.08996 * 109.58611 * 65.15191 * 6 5 4 38 38 H 1.09006 * 109.58456 * 185.57761 * 6 5 4 39 39 H 1.08005 * 120.03575 * 359.97438 * 11 10 8 40 40 H 1.08004 * 119.84168 * 180.02562 * 12 11 10 41 41 H 1.08006 * 119.80065 * 179.97438 * 13 12 11 42 42 H 1.08012 * 119.96405 * 180.02562 * 14 13 12 43 43 H 0.96997 * 119.99491 * 179.97438 * 20 19 17 44 44 H 0.96692 * 117.00151 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0415 -0.7230 1.2482 5 6 1.5043 -2.1559 1.2658 6 6 2.0153 -2.9038 0.0305 7 7 1.6522 -2.1380 -1.1697 8 6 0.9750 -2.7220 -2.1782 9 8 0.7913 -2.1179 -3.2172 10 6 0.4566 -4.0943 -2.0211 11 6 -0.3850 -4.4094 -0.9520 12 6 -0.8663 -5.6932 -0.8112 13 6 -0.5200 -6.6745 -1.7261 14 6 0.3108 -6.3779 -2.7876 15 6 0.8013 -5.0891 -2.9482 16 8 1.6126 -4.7945 -3.9930 17 6 1.8091 -5.7648 -4.9079 18 1 1.2718 -6.6984 -4.8288 19 6 2.7009 -5.5642 -5.9510 20 7 3.3554 -4.4275 -6.0472 21 14 2.9726 -6.9085 -7.2193 22 1 2.0108 -6.7357 -8.3375 23 1 4.3598 -6.8230 -7.7419 24 1 2.7628 -8.2356 -6.5867 25 6 2.0413 -0.7235 -1.2497 26 1 3.1274 -0.6455 -1.2985 27 6 1.4316 -0.1006 -2.4790 28 8 0.2439 0.1176 -2.5200 29 8 2.2080 0.2119 -3.5286 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5149 0.8894 32 1 -0.3632 0.5129 -0.8906 33 1 3.1311 -0.7438 1.2348 34 1 1.6995 -0.1959 2.1388 35 1 1.8498 -2.6629 2.1668 36 1 0.4145 -2.1361 1.2542 37 1 3.0993 -3.0036 0.0862 38 1 1.5571 -3.8919 -0.0140 39 1 -0.6582 -3.6480 -0.2364 40 1 -1.5174 -5.9353 0.0159 41 1 -0.9017 -7.6779 -1.6074 42 1 0.5759 -7.1482 -3.4969 43 1 3.9794 -4.2874 -6.7765 44 1 1.7717 0.6099 -4.2942 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589327835.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:17 Heat of formation + Delta-G solvation = -109.209782 kcal Electronic energy + Delta-G solvation = -30602.080883 eV Core-core repulsion = 26485.910185 eV Total energy + Delta-G solvation = -4116.170698 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.06211 -39.36088 -38.37122 -37.27404 -36.43808 -35.53213 -33.36117 -32.40355 -31.85871 -30.49591 -29.04587 -27.41401 -25.83938 -25.44732 -23.56356 -22.98972 -21.72751 -21.22778 -20.04048 -18.54365 -18.10978 -17.79242 -17.34969 -16.52251 -16.09385 -15.66959 -15.17033 -14.99756 -14.69349 -14.58469 -14.41717 -14.01437 -13.83012 -13.70933 -13.56613 -13.29595 -12.97228 -12.84453 -12.69604 -12.52638 -11.96891 -11.77443 -11.64628 -11.38819 -11.25297 -11.21943 -11.13185 -10.94462 -10.86840 -10.81044 -10.77619 -10.49494 -10.44103 -9.67579 -9.41998 -9.11993 -8.91887 -8.42634 -8.25374 -7.39713 -6.51631 -4.11326 1.74923 2.23666 2.53732 3.08875 3.10104 3.14542 3.27483 3.37915 3.51870 3.89173 4.41300 4.56769 4.73297 4.88685 4.96314 5.03417 5.05362 5.13830 5.20733 5.44175 5.45398 5.54782 5.57333 5.64635 5.65615 5.75374 5.81896 5.86814 5.92846 5.95792 6.06392 6.09055 6.19450 6.23741 6.50733 6.55754 6.60909 6.71349 6.90156 6.99148 7.18444 7.22503 7.23854 7.61759 7.67877 7.89235 8.45841 8.70157 8.90540 9.57355 10.63897 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012860 B = 0.004822 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.695354 B = 5805.581034 C = 7174.463965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.093 4.093 3 H 0.082 0.918 4 C -0.111 4.111 5 C -0.139 4.139 6 C 0.108 3.892 7 N -0.604 5.604 8 C 0.581 3.419 9 O -0.496 6.496 10 C -0.215 4.215 11 C -0.039 4.039 12 C -0.223 4.223 13 C -0.054 4.054 14 C -0.233 4.233 15 C 0.187 3.813 16 O -0.150 6.150 17 C -0.398 4.398 18 H 0.095 0.905 19 C 0.044 3.956 20 N -0.844 5.844 21 Si 0.943 3.057 22 H -0.272 1.272 23 H -0.276 1.276 24 H -0.266 1.266 25 C 0.161 3.839 26 H 0.096 0.904 27 C 0.501 3.499 28 O -0.511 6.511 29 O -0.511 6.511 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.101 0.899 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.133 0.867 43 H 0.272 0.728 44 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.317 4.276 14.302 14.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.112 4.112 3 H 0.100 0.900 4 C -0.148 4.148 5 C -0.177 4.177 6 C -0.014 4.014 7 N -0.342 5.342 8 C 0.372 3.628 9 O -0.371 6.371 10 C -0.219 4.219 11 C -0.058 4.058 12 C -0.242 4.242 13 C -0.072 4.072 14 C -0.252 4.252 15 C 0.129 3.871 16 O -0.050 6.050 17 C -0.474 4.474 18 H 0.112 0.888 19 C -0.163 4.163 20 N -0.476 5.476 21 Si 0.767 3.233 22 H -0.197 1.197 23 H -0.201 1.201 24 H -0.190 1.190 25 C 0.056 3.944 26 H 0.114 0.886 27 C 0.345 3.655 28 O -0.401 6.401 29 O -0.322 6.322 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.115 0.885 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.119 0.881 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.150 0.850 43 H 0.082 0.918 44 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -1.206 4.808 13.779 14.643 hybrid contribution -0.068 -0.587 -1.097 1.246 sum -1.274 4.221 12.682 13.426 Atomic orbital electron populations 1.22334 0.93518 1.03201 1.03402 1.21397 0.98201 0.98786 0.92823 0.90006 1.21533 1.00609 0.95755 0.96948 1.22019 1.02000 0.95827 0.97885 1.21859 1.00510 0.96146 0.82917 1.47974 1.58050 1.08324 1.19843 1.18350 0.76266 0.86187 0.81966 1.90708 1.56945 1.62667 1.26797 1.18506 1.10319 0.92111 1.00967 1.20680 0.94562 0.96176 0.94362 1.20478 1.07570 0.93538 1.02589 1.20904 0.94853 0.98238 0.93219 1.21143 1.05171 0.96808 1.02095 1.19191 0.89590 0.91472 0.86880 1.84003 1.54051 1.39576 1.27361 1.21401 1.25850 0.96515 1.03593 0.88801 1.25365 0.95183 0.97899 0.97857 1.70070 1.23849 1.22897 1.30801 0.85692 0.78227 0.79553 0.79846 1.19703 1.20127 1.19047 1.20576 0.99993 0.82638 0.91170 0.88646 1.22290 0.85000 0.74468 0.83709 1.90509 1.16291 1.52432 1.80843 1.84437 1.45314 1.75446 1.26974 0.92413 0.93528 0.88532 0.91519 0.91182 0.90538 0.90834 0.91316 0.88055 0.86723 0.87040 0.87045 0.84966 0.91783 0.73346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 8.05 37.16 0.30 -1.97 16 2 C -0.09 -1.12 2.80 -90.50 -0.25 -1.37 16 3 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.11 -1.04 5.43 -26.69 -0.14 -1.19 16 5 C -0.14 -1.39 5.74 -26.62 -0.15 -1.55 16 6 C 0.11 1.44 5.95 -3.71 -0.02 1.42 16 7 N -0.60 -10.50 2.41 -167.76 -0.40 -10.91 16 8 C 0.58 12.99 6.59 -12.47 -0.08 12.91 16 9 O -0.50 -13.15 12.96 -25.40 -0.33 -13.48 16 10 C -0.21 -4.64 4.68 -104.81 -0.49 -5.13 16 11 C -0.04 -0.68 7.65 -39.20 -0.30 -0.98 16 12 C -0.22 -3.58 10.02 -39.61 -0.40 -3.97 16 13 C -0.05 -0.92 10.03 -39.54 -0.40 -1.32 16 14 C -0.23 -4.89 9.13 -39.44 -0.36 -5.25 16 15 C 0.19 4.54 6.65 -38.60 -0.26 4.28 16 16 O -0.15 -4.34 8.99 -1.03 -0.01 -4.35 16 17 C -0.40 -11.10 9.45 30.90 0.29 -10.81 16 18 H 0.09 2.39 5.28 -52.48 -0.28 2.11 16 19 C 0.04 1.20 5.49 -17.51 -0.10 1.11 16 20 N -0.84 -24.99 13.67 55.48 0.76 -24.23 16 21 Si 0.94 20.36 29.55 -169.99 -5.02 15.34 16 22 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 25 C 0.16 2.54 3.11 -68.75 -0.21 2.33 16 26 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 27 C 0.50 9.41 4.49 36.00 0.16 9.57 16 28 O -0.51 -10.55 12.83 -26.42 -0.34 -10.89 16 29 O -0.51 -9.21 13.29 -44.72 -0.59 -9.80 16 30 H 0.06 0.85 5.97 -51.93 -0.31 0.54 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.10 1.57 5.01 -52.10 -0.26 1.31 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.78 6.26 -51.93 -0.32 0.45 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.10 1.43 5.00 -51.93 -0.26 1.17 16 39 H 0.11 1.71 7.82 -52.48 -0.41 1.30 16 40 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 41 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 42 H 0.13 2.75 5.71 -52.48 -0.30 2.45 16 43 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 44 H 0.41 5.93 9.10 45.56 0.41 6.34 16 LS Contribution 351.85 15.07 5.30 5.30 Total: -1.00 -35.81 351.85 -7.72 -43.53 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -4.67 Total: 11.39 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -2.41 Total: -1.92 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.35 Total: -35.13 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -1.27 Total: -38.51 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.81 -7.72 -43.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589327835.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.682 kcal (2) G-P(sol) polarization free energy of solvation -35.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds