Wall clock time and date at job start Tue Mar 31 2020 17:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.50030 * 2 1 4 4 C 1.53047 * 109.52389 * 120.08123 * 2 1 3 5 5 C 1.53035 * 109.53657 * 58.60152 * 4 2 1 6 6 C 1.53188 * 109.31502 * 61.36882 * 5 4 2 7 7 N 1.46926 * 108.77368 * 305.36298 * 6 5 4 8 8 C 1.34782 * 120.63104 * 233.60968 * 7 6 5 9 9 O 1.21590 * 119.99883 * 187.00283 * 8 7 6 10 10 C 1.47533 * 119.99707 * 7.00659 * 8 7 6 11 11 C 1.39665 * 120.20376 * 55.51672 * 10 8 7 12 12 C 1.37820 * 119.92132 * 179.97438 * 11 10 8 13 13 C 1.38570 * 120.32568 * 359.97438 * 12 11 10 14 14 C 1.38023 * 120.39990 * 0.02785 * 13 12 11 15 15 C 1.38830 * 120.07452 * 359.73640 * 14 13 12 16 16 O 1.35525 * 120.16479 * 180.27571 * 15 14 13 17 17 C 1.34810 * 116.99934 * 5.83095 * 16 15 14 18 18 H 1.08006 * 119.99905 * 4.56288 * 17 16 15 19 19 C 1.38698 * 120.00155 * 184.55308 * 17 16 15 20 20 N 1.31523 * 119.99842 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00151 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47032 * 90.00451 * 21 19 17 23 23 H 1.48493 * 109.47300 * 210.00120 * 21 19 17 24 24 H 1.48504 * 109.47453 * 330.00682 * 21 19 17 25 25 C 1.46925 * 118.73954 * 53.60858 * 7 6 5 26 26 H 1.08997 * 109.58687 * 66.18220 * 25 7 6 27 27 C 1.50697 * 109.58770 * 186.60562 * 25 7 6 28 28 O 1.20826 * 120.00169 * 71.98591 * 27 25 7 29 29 O 1.34236 * 120.00051 * 251.99003 * 27 25 7 30 30 H 1.08993 * 109.47128 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46848 * 300.06699 * 1 2 3 32 32 H 1.09001 * 109.46593 * 60.06178 * 1 2 3 33 33 H 1.08997 * 109.45799 * 178.62344 * 4 2 1 34 34 H 1.08997 * 109.45407 * 298.57574 * 4 2 1 35 35 H 1.09003 * 109.49763 * 181.32186 * 5 4 2 36 36 H 1.09000 * 109.50039 * 301.41441 * 5 4 2 37 37 H 1.08996 * 109.58611 * 65.15191 * 6 5 4 38 38 H 1.09006 * 109.58456 * 185.57761 * 6 5 4 39 39 H 1.08005 * 120.03575 * 359.97438 * 11 10 8 40 40 H 1.08004 * 119.84168 * 180.02562 * 12 11 10 41 41 H 1.08006 * 119.80065 * 179.97438 * 13 12 11 42 42 H 1.08012 * 119.96405 * 180.02562 * 14 13 12 43 43 H 0.96997 * 119.99491 * 179.97438 * 20 19 17 44 44 H 0.96692 * 117.00151 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0415 -0.7230 1.2482 5 6 1.5043 -2.1559 1.2658 6 6 2.0153 -2.9038 0.0305 7 7 1.6522 -2.1380 -1.1697 8 6 0.9750 -2.7220 -2.1782 9 8 0.7913 -2.1179 -3.2172 10 6 0.4566 -4.0943 -2.0211 11 6 -0.3850 -4.4094 -0.9520 12 6 -0.8663 -5.6932 -0.8112 13 6 -0.5200 -6.6745 -1.7261 14 6 0.3108 -6.3779 -2.7876 15 6 0.8013 -5.0891 -2.9482 16 8 1.6126 -4.7945 -3.9930 17 6 1.8091 -5.7648 -4.9079 18 1 1.2718 -6.6984 -4.8288 19 6 2.7009 -5.5642 -5.9510 20 7 3.3554 -4.4275 -6.0472 21 14 2.9726 -6.9085 -7.2193 22 1 2.0108 -6.7357 -8.3375 23 1 4.3598 -6.8230 -7.7419 24 1 2.7628 -8.2356 -6.5867 25 6 2.0413 -0.7235 -1.2497 26 1 3.1274 -0.6455 -1.2985 27 6 1.4316 -0.1006 -2.4790 28 8 0.2439 0.1176 -2.5200 29 8 2.2080 0.2119 -3.5286 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5149 0.8894 32 1 -0.3632 0.5129 -0.8906 33 1 3.1311 -0.7438 1.2348 34 1 1.6995 -0.1959 2.1388 35 1 1.8498 -2.6629 2.1668 36 1 0.4145 -2.1361 1.2542 37 1 3.0993 -3.0036 0.0862 38 1 1.5571 -3.8919 -0.0140 39 1 -0.6582 -3.6480 -0.2364 40 1 -1.5174 -5.9353 0.0159 41 1 -0.9017 -7.6779 -1.6074 42 1 0.5759 -7.1482 -3.4969 43 1 3.9794 -4.2874 -6.7765 44 1 1.7717 0.6099 -4.2942 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589327835.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:16 Heat of formation + Delta-G solvation = -133.670376 kcal Electronic energy + Delta-G solvation = -30603.141574 eV Core-core repulsion = 26485.910185 eV Total energy + Delta-G solvation = -4117.231389 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.46136 -40.98946 -39.86343 -38.72256 -38.10722 -37.01443 -34.66031 -34.36454 -32.97210 -31.95758 -30.66671 -28.64191 -27.42113 -26.92099 -24.85253 -24.32508 -23.33367 -22.56633 -21.40535 -19.96653 -19.75100 -19.19424 -18.92446 -18.14405 -17.56984 -17.01425 -16.69729 -16.50466 -16.27485 -15.83998 -15.72217 -15.58420 -15.40745 -15.06202 -15.01861 -14.59064 -14.40938 -14.29710 -14.07354 -13.88986 -13.58699 -13.16272 -12.98174 -12.82464 -12.73027 -12.55040 -12.37252 -12.30202 -12.22087 -12.14039 -12.10192 -11.75081 -11.51545 -11.36375 -10.86714 -10.80457 -10.68926 -9.87217 -9.69007 -9.09581 -8.50080 -6.19924 0.19803 0.66604 1.12081 1.31313 1.42128 1.49838 1.65627 2.08493 2.11320 2.13527 2.77622 3.11267 3.36567 3.49541 3.76223 3.78982 3.94767 4.03248 4.09280 4.11613 4.24479 4.31760 4.41294 4.52337 4.54650 4.61385 4.64070 4.75277 4.89963 4.94152 4.98205 5.03722 5.06689 5.12342 5.17847 5.24831 5.30537 5.44839 5.49482 5.53711 5.56147 5.66852 5.90604 5.92785 6.11909 6.23227 6.91545 7.00823 7.13021 7.71626 8.71661 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012860 B = 0.004822 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.695354 B = 5805.581034 C = 7174.463965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.086 4.086 3 H 0.101 0.899 4 C -0.105 4.105 5 C -0.130 4.130 6 C 0.097 3.903 7 N -0.595 5.595 8 C 0.567 3.433 9 O -0.558 6.558 10 C -0.227 4.227 11 C -0.034 4.034 12 C -0.189 4.189 13 C -0.044 4.044 14 C -0.247 4.247 15 C 0.146 3.854 16 O -0.213 6.213 17 C -0.419 4.419 18 H 0.107 0.893 19 C -0.022 4.022 20 N -0.912 5.912 21 Si 1.021 2.979 22 H -0.267 1.267 23 H -0.271 1.271 24 H -0.245 1.245 25 C 0.152 3.848 26 H 0.106 0.894 27 C 0.491 3.509 28 O -0.535 6.535 29 O -0.522 6.522 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.145 0.855 40 H 0.165 0.835 41 H 0.157 0.843 42 H 0.125 0.875 43 H 0.272 0.728 44 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.567 2.655 18.798 19.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.105 4.105 3 H 0.120 0.880 4 C -0.143 4.143 5 C -0.168 4.168 6 C -0.023 4.023 7 N -0.331 5.331 8 C 0.358 3.642 9 O -0.437 6.437 10 C -0.231 4.231 11 C -0.053 4.053 12 C -0.207 4.207 13 C -0.061 4.061 14 C -0.267 4.267 15 C 0.093 3.907 16 O -0.117 6.117 17 C -0.495 4.495 18 H 0.124 0.876 19 C -0.220 4.220 20 N -0.549 5.549 21 Si 0.840 3.160 22 H -0.192 1.192 23 H -0.195 1.195 24 H -0.168 1.168 25 C 0.048 3.952 26 H 0.124 0.876 27 C 0.336 3.664 28 O -0.426 6.426 29 O -0.334 6.334 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.118 0.882 35 H 0.129 0.871 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.163 0.837 40 H 0.182 0.818 41 H 0.174 0.826 42 H 0.143 0.857 43 H 0.081 0.919 44 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -2.479 3.168 18.386 18.821 hybrid contribution 0.082 -0.048 -2.143 2.145 sum -2.396 3.120 16.244 16.713 Atomic orbital electron populations 1.22222 0.94557 1.02105 1.03059 1.21491 0.97198 0.99786 0.92003 0.88043 1.21573 1.01498 0.95071 0.96116 1.22013 1.01849 0.96055 0.96870 1.22215 1.01301 0.95970 0.82825 1.48036 1.56120 1.09140 1.19801 1.18697 0.76722 0.86551 0.82194 1.90670 1.59586 1.64205 1.29278 1.18911 1.10967 0.91494 1.01719 1.21087 0.92915 0.97951 0.93329 1.21145 1.05137 0.91993 1.02444 1.21415 0.92712 1.00732 0.91291 1.21301 1.06304 0.95382 1.03677 1.19879 0.90022 0.93747 0.87065 1.83983 1.57286 1.40887 1.29582 1.21913 1.26265 0.96919 1.04368 0.87611 1.26697 0.94666 1.00577 1.00064 1.70246 1.26194 1.25971 1.32483 0.84568 0.78190 0.76762 0.76529 1.19240 1.19522 1.16821 1.21008 1.00566 0.82004 0.91588 0.87591 1.23061 0.84955 0.73916 0.84426 1.90499 1.17335 1.53281 1.81511 1.84429 1.45858 1.75533 1.27617 0.93823 0.90622 0.91942 0.90087 0.88209 0.87100 0.90999 0.90352 0.88891 0.83692 0.81752 0.82588 0.85688 0.91941 0.72355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.11 8.05 71.98 0.58 -3.53 16 2 C -0.09 -1.87 2.80 -10.71 -0.03 -1.90 16 3 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 4 C -0.11 -1.50 5.43 30.62 0.17 -1.33 16 5 C -0.13 -2.02 5.74 30.67 0.18 -1.85 16 6 C 0.10 2.41 5.95 86.36 0.51 2.92 16 7 N -0.59 -20.81 2.41 -802.92 -1.94 -22.75 16 8 C 0.57 26.52 6.59 86.69 0.57 27.09 16 9 O -0.56 -31.88 12.96 25.34 0.33 -31.55 16 10 C -0.23 -9.96 4.68 -19.99 -0.09 -10.06 16 11 C -0.03 -1.10 7.65 22.52 0.17 -0.93 16 12 C -0.19 -5.06 10.02 22.25 0.22 -4.84 16 13 C -0.04 -1.32 10.03 22.30 0.22 -1.10 16 14 C -0.25 -10.37 9.13 22.36 0.20 -10.17 16 15 C 0.15 7.44 6.65 22.91 0.15 7.59 16 16 O -0.21 -13.33 8.99 -18.32 -0.16 -13.50 16 17 C -0.42 -24.98 9.45 67.93 0.64 -24.33 16 18 H 0.11 5.68 5.28 -2.91 -0.02 5.66 16 19 C -0.02 -1.26 5.49 84.85 0.47 -0.79 16 20 N -0.91 -58.48 13.67 21.62 0.30 -58.18 16 21 Si 1.02 43.77 29.55 68.60 2.03 45.80 16 22 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 24 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 25 C 0.15 4.83 3.11 44.23 0.14 4.97 16 26 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 27 C 0.49 19.52 4.49 71.24 0.32 19.84 16 28 O -0.54 -23.48 12.83 29.30 0.38 -23.10 16 29 O -0.52 -20.45 13.29 -46.27 -0.62 -21.07 16 30 H 0.04 1.20 5.97 -2.39 -0.01 1.19 16 31 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.06 2.06 5.01 -5.11 -0.03 2.03 16 33 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.19 6.26 -2.39 -0.01 1.17 16 37 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.09 2.44 5.00 -2.38 -0.01 2.43 16 39 H 0.15 3.75 7.82 -2.91 -0.02 3.72 16 40 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 41 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 42 H 0.13 5.31 5.71 -2.90 -0.02 5.29 16 43 H 0.27 15.98 8.31 -92.71 -0.77 15.20 16 44 H 0.42 13.65 9.10 -74.06 -0.67 12.97 16 Total: -1.00 -90.48 351.85 5.11 -85.37 By element: Atomic # 1 Polarization: 37.02 SS G_CDS: 0.37 Total: 37.39 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: 4.42 Total: 1.58 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -1.64 Total: -80.93 kcal Atomic # 8 Polarization: -89.14 SS G_CDS: -0.08 Total: -89.22 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -90.48 5.11 -85.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589327835.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.298 kcal (2) G-P(sol) polarization free energy of solvation -90.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds