Wall clock time and date at job start Tue Mar 31 2020 17:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.45467 * 2 1 4 4 C 1.53034 * 109.46069 * 240.03781 * 2 1 3 5 5 C 1.53623 * 109.24232 * 178.48971 * 4 2 1 6 6 N 1.46937 * 108.54215 * 54.85528 * 5 4 2 7 7 C 1.34778 * 120.62679 * 126.36888 * 6 5 4 8 8 O 1.21590 * 119.99951 * 353.89529 * 7 6 5 9 9 C 1.47531 * 119.99631 * 173.89408 * 7 6 5 10 10 C 1.39664 * 120.19933 * 306.19310 * 9 7 6 11 11 C 1.37826 * 119.91970 * 180.20853 * 10 9 7 12 12 C 1.38575 * 120.32541 * 359.81291 * 11 10 9 13 13 C 1.38020 * 120.39968 * 359.97362 * 12 11 10 14 14 C 1.38833 * 120.07351 * 359.97438 * 13 12 11 15 15 O 1.35516 * 120.16554 * 179.97438 * 14 13 12 16 16 C 1.34821 * 116.99717 * 5.43076 * 15 14 13 17 17 H 1.07998 * 119.99910 * 354.95623 * 16 15 14 18 18 C 1.38704 * 119.99972 * 174.95377 * 16 15 14 19 19 N 1.31520 * 119.99648 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 119.99769 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46886 * 179.97438 * 20 18 16 22 22 H 1.48493 * 109.47327 * 299.99706 * 20 18 16 23 23 H 1.48501 * 109.47629 * 60.00209 * 20 18 16 24 24 C 1.46918 * 118.73608 * 306.09934 * 6 5 4 25 25 C 1.53036 * 109.45789 * 119.96862 * 2 1 3 26 26 H 1.08998 * 109.50088 * 61.43553 * 25 2 1 27 27 C 1.50705 * 109.52709 * 301.35537 * 25 2 1 28 28 O 1.20825 * 119.99588 * 0.14720 * 27 25 2 29 29 O 1.34229 * 120.00116 * 180.14442 * 27 25 2 30 30 H 1.09000 * 109.47355 * 300.02573 * 1 2 3 31 31 H 1.08999 * 109.46826 * 60.03186 * 1 2 3 32 32 H 1.09002 * 109.46885 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.49932 * 298.56362 * 4 2 1 34 34 H 1.08999 * 109.49814 * 58.63439 * 4 2 1 35 35 H 1.08996 * 109.73996 * 295.12223 * 5 4 2 36 36 H 1.08997 * 109.67097 * 174.54674 * 5 4 2 37 37 H 1.08001 * 120.04102 * 0.02562 * 10 9 7 38 38 H 1.08004 * 119.84106 * 179.78476 * 11 10 9 39 39 H 1.07999 * 119.80036 * 179.97438 * 12 11 10 40 40 H 1.07999 * 119.96687 * 180.02562 * 13 12 11 41 41 H 0.97005 * 119.99438 * 179.97438 * 19 18 16 42 42 H 1.09005 * 109.58711 * 173.65027 * 24 6 5 43 43 H 1.09001 * 109.58898 * 293.92320 * 24 6 5 44 44 H 0.96701 * 116.99808 * 179.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7206 -1.2501 5 6 3.5756 -0.6847 -1.2642 6 7 4.0679 -1.2488 0.0001 7 6 4.9621 -2.2571 0.0000 8 8 5.2854 -2.7829 -1.0476 9 6 5.5488 -2.7229 1.2710 10 6 6.1707 -1.8157 2.1317 11 6 6.7207 -2.2578 3.3157 12 6 6.6565 -3.5987 3.6593 13 6 6.0412 -4.5060 2.8207 14 6 5.4808 -4.0786 1.6246 15 8 4.8767 -4.9679 0.7995 16 6 4.7533 -6.2332 1.2484 17 1 5.1995 -6.5181 2.1897 18 6 4.0533 -7.1689 0.5012 19 7 3.5103 -6.8219 -0.6453 20 14 3.8818 -8.9218 1.1235 21 1 3.0941 -9.7182 0.1486 22 1 5.2294 -9.5249 1.2820 23 1 3.1848 -8.9157 2.4347 24 6 3.5713 -0.6886 1.2643 25 6 2.0398 -0.7208 1.2500 26 1 1.6978 -1.7557 1.2382 27 6 1.5107 -0.0303 2.4807 28 8 0.7964 0.9379 2.3700 29 8 1.8331 -0.4908 3.6996 30 1 -0.3634 0.5142 0.8897 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3633 -1.0277 0.0005 33 1 1.6979 -1.7556 -1.2384 34 1 1.6568 -0.2209 -2.1398 35 1 3.9188 0.3451 -1.3630 36 1 3.9488 -1.2781 -2.0989 37 1 6.2233 -0.7696 1.8686 38 1 7.2044 -1.5558 3.9788 39 1 7.0907 -3.9360 4.5890 40 1 5.9949 -5.5494 3.0956 41 1 3.0211 -7.4765 -1.1680 42 1 3.9416 -1.2846 2.0985 43 1 3.9163 0.3400 1.3687 44 1 1.4700 -0.0146 4.4589 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589350033.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:31 Heat of formation + Delta-G solvation = -124.487537 kcal Electronic energy + Delta-G solvation = -29836.965574 eV Core-core repulsion = 25720.132383 eV Total energy + Delta-G solvation = -4116.833191 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.90066 -39.80425 -38.62396 -37.14125 -36.40100 -36.13862 -33.60546 -32.39147 -31.73949 -30.42690 -29.03038 -28.17545 -25.46228 -24.75462 -23.97588 -22.45464 -21.92515 -21.36867 -20.09713 -19.08808 -18.11842 -18.06818 -17.39731 -16.69142 -16.17817 -16.05862 -15.31929 -15.00074 -14.77579 -14.47258 -14.33120 -14.13589 -13.92398 -13.66327 -13.63195 -13.36940 -12.95480 -12.82733 -12.76392 -12.39866 -12.01758 -11.89197 -11.76572 -11.54946 -11.48511 -11.34750 -11.17427 -11.00291 -10.93863 -10.84579 -10.79378 -10.54090 -10.50569 -10.10985 -9.65493 -9.08087 -8.91679 -8.35575 -8.25108 -7.36915 -6.50606 -4.10654 1.78771 2.07190 2.26433 2.88414 3.09341 3.10790 3.13607 3.33454 3.49744 3.89985 4.44287 4.45186 4.68500 4.79324 4.96954 5.01689 5.09604 5.17492 5.22758 5.34504 5.45088 5.47306 5.51539 5.64171 5.68569 5.72707 5.75623 5.80215 5.94890 5.97844 6.02162 6.12397 6.16024 6.20060 6.38126 6.52930 6.54393 6.60754 6.84320 6.92956 7.01584 7.21330 7.25639 7.64315 7.78495 7.81936 7.91393 8.82364 8.91783 9.59552 10.64857 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.010548 B = 0.004424 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.953473 B = 6327.884952 C = 7009.491794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.072 4.072 3 H 0.078 0.922 4 C -0.129 4.129 5 C 0.111 3.889 6 N -0.616 5.616 7 C 0.582 3.418 8 O -0.516 6.516 9 C -0.219 4.219 10 C -0.042 4.042 11 C -0.222 4.222 12 C -0.054 4.054 13 C -0.233 4.233 14 C 0.188 3.812 15 O -0.149 6.149 16 C -0.399 4.399 17 H 0.094 0.906 18 C 0.044 3.956 19 N -0.845 5.845 20 Si 0.942 3.058 21 H -0.277 1.277 22 H -0.268 1.268 23 H -0.269 1.269 24 C 0.123 3.877 25 C -0.095 4.095 26 H 0.117 0.883 27 C 0.490 3.510 28 O -0.512 6.512 29 O -0.509 6.509 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.132 0.868 41 H 0.272 0.728 42 H 0.108 0.892 43 H 0.067 0.933 44 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.967 12.965 6.435 14.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.090 4.090 3 H 0.097 0.903 4 C -0.168 4.168 5 C -0.011 4.011 6 N -0.352 5.352 7 C 0.372 3.628 8 O -0.390 6.390 9 C -0.224 4.224 10 C -0.061 4.061 11 C -0.241 4.241 12 C -0.073 4.073 13 C -0.252 4.252 14 C 0.130 3.870 15 O -0.049 6.049 16 C -0.475 4.475 17 H 0.112 0.888 18 C -0.163 4.163 19 N -0.478 5.478 20 Si 0.766 3.234 21 H -0.202 1.202 22 H -0.193 1.193 23 H -0.194 1.194 24 C -0.001 4.001 25 C -0.115 4.115 26 H 0.135 0.865 27 C 0.333 3.667 28 O -0.401 6.401 29 O -0.320 6.320 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.114 0.886 37 H 0.132 0.868 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.150 0.850 41 H 0.082 0.918 42 H 0.126 0.874 43 H 0.085 0.915 44 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -3.059 12.583 5.008 13.884 hybrid contribution -0.394 -0.605 0.987 1.223 sum -3.453 11.978 5.995 13.833 Atomic orbital electron populations 1.22125 0.94399 1.02045 1.03371 1.20983 0.96566 0.99246 0.92220 0.90315 1.22086 0.95546 1.01940 0.97197 1.21648 0.93423 0.98439 0.87628 1.47937 1.44511 1.36775 1.05948 1.18218 0.77909 0.77490 0.89174 1.90782 1.60738 1.54085 1.33411 1.18691 1.13551 0.91948 0.98200 1.20695 0.95400 0.97255 0.92754 1.20472 1.08983 0.95820 0.98798 1.20889 0.95595 0.93083 0.97688 1.21134 1.06657 1.00863 0.96579 1.19192 0.90515 0.88427 0.88882 1.84012 1.64375 1.18700 1.37833 1.21366 1.35890 0.82904 1.07351 0.88845 1.25351 0.95465 1.00037 0.95409 1.70063 1.30883 1.35415 1.11398 0.85777 0.78960 0.80075 0.78619 1.20180 1.19326 1.19382 1.21584 0.90098 0.99814 0.88603 1.21584 0.98065 1.02189 0.89710 0.86464 1.23348 0.77101 0.81617 0.84655 1.90632 1.35572 1.26831 1.87064 1.84626 1.71087 1.59567 1.16704 0.90184 0.92557 0.92973 0.90651 0.90284 0.91882 0.88557 0.86812 0.87142 0.87123 0.85040 0.91771 0.87404 0.91487 0.73380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 8.85 37.16 0.33 -1.53 16 2 C -0.07 -0.85 1.87 -90.58 -0.17 -1.02 16 3 H 0.08 0.89 8.13 -51.93 -0.42 0.47 16 4 C -0.13 -1.62 5.38 -26.39 -0.14 -1.77 16 5 C 0.11 1.59 6.47 -3.48 -0.02 1.57 16 6 N -0.62 -10.28 2.97 -173.73 -0.52 -10.79 16 7 C 0.58 12.56 6.82 -12.47 -0.09 12.48 16 8 O -0.52 -13.41 16.18 2.08 0.03 -13.38 16 9 C -0.22 -4.62 4.62 -104.81 -0.48 -5.10 16 10 C -0.04 -0.71 7.77 -39.20 -0.30 -1.02 16 11 C -0.22 -3.50 10.02 -39.61 -0.40 -3.90 16 12 C -0.05 -0.92 10.03 -39.54 -0.40 -1.31 16 13 C -0.23 -4.84 9.16 -39.44 -0.36 -5.20 16 14 C 0.19 4.49 6.65 -38.60 -0.26 4.24 16 15 O -0.15 -4.26 8.96 -2.42 -0.02 -4.28 16 16 C -0.40 -10.99 9.49 30.90 0.29 -10.70 16 17 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 18 C 0.04 1.20 5.49 -17.51 -0.10 1.10 16 19 N -0.85 -24.81 13.67 55.48 0.76 -24.05 16 20 Si 0.94 20.16 29.55 -169.99 -5.02 15.13 16 21 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 C 0.12 1.68 4.77 -3.72 -0.02 1.66 16 25 C -0.10 -1.23 2.33 -91.65 -0.21 -1.45 16 26 H 0.12 1.70 8.14 -51.93 -0.42 1.27 16 27 C 0.49 5.92 7.34 36.01 0.26 6.18 16 28 O -0.51 -6.90 14.33 -18.75 -0.27 -7.17 16 29 O -0.51 -5.24 13.35 -39.25 -0.52 -5.76 16 30 H 0.08 1.00 5.40 -51.93 -0.28 0.72 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.10 1.59 7.00 -51.93 -0.36 1.22 16 37 H 0.11 1.60 7.75 -52.49 -0.41 1.20 16 38 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 39 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.13 2.70 5.64 -52.49 -0.30 2.40 16 41 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.11 1.60 5.39 -51.93 -0.28 1.32 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.41 2.28 9.10 45.56 0.41 2.69 16 LS Contribution 362.42 15.07 5.46 5.46 Total: -1.00 -34.77 362.42 -7.01 -41.78 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -4.85 Total: 8.83 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -2.06 Total: -5.76 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.24 Total: -34.84 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -0.78 Total: -30.59 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.77 -7.01 -41.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589350033.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.711 kcal (2) G-P(sol) polarization free energy of solvation -34.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds