Wall clock time and date at job start Tue Mar 31 2020 17:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.45467 * 2 1 4 4 C 1.53034 * 109.46069 * 240.03781 * 2 1 3 5 5 C 1.53623 * 109.24232 * 178.48971 * 4 2 1 6 6 N 1.46937 * 108.54215 * 54.85528 * 5 4 2 7 7 C 1.34778 * 120.62679 * 126.36888 * 6 5 4 8 8 O 1.21590 * 119.99951 * 353.89529 * 7 6 5 9 9 C 1.47531 * 119.99631 * 173.89408 * 7 6 5 10 10 C 1.39664 * 120.19933 * 306.19310 * 9 7 6 11 11 C 1.37826 * 119.91970 * 180.20853 * 10 9 7 12 12 C 1.38575 * 120.32541 * 359.81291 * 11 10 9 13 13 C 1.38020 * 120.39968 * 359.97362 * 12 11 10 14 14 C 1.38833 * 120.07351 * 359.97438 * 13 12 11 15 15 O 1.35516 * 120.16554 * 179.97438 * 14 13 12 16 16 C 1.34821 * 116.99717 * 5.43076 * 15 14 13 17 17 H 1.07998 * 119.99910 * 354.95623 * 16 15 14 18 18 C 1.38704 * 119.99972 * 174.95377 * 16 15 14 19 19 N 1.31520 * 119.99648 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 119.99769 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46886 * 179.97438 * 20 18 16 22 22 H 1.48493 * 109.47327 * 299.99706 * 20 18 16 23 23 H 1.48501 * 109.47629 * 60.00209 * 20 18 16 24 24 C 1.46918 * 118.73608 * 306.09934 * 6 5 4 25 25 C 1.53036 * 109.45789 * 119.96862 * 2 1 3 26 26 H 1.08998 * 109.50088 * 61.43553 * 25 2 1 27 27 C 1.50705 * 109.52709 * 301.35537 * 25 2 1 28 28 O 1.20825 * 119.99588 * 0.14720 * 27 25 2 29 29 O 1.34229 * 120.00116 * 180.14442 * 27 25 2 30 30 H 1.09000 * 109.47355 * 300.02573 * 1 2 3 31 31 H 1.08999 * 109.46826 * 60.03186 * 1 2 3 32 32 H 1.09002 * 109.46885 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.49932 * 298.56362 * 4 2 1 34 34 H 1.08999 * 109.49814 * 58.63439 * 4 2 1 35 35 H 1.08996 * 109.73996 * 295.12223 * 5 4 2 36 36 H 1.08997 * 109.67097 * 174.54674 * 5 4 2 37 37 H 1.08001 * 120.04102 * 0.02562 * 10 9 7 38 38 H 1.08004 * 119.84106 * 179.78476 * 11 10 9 39 39 H 1.07999 * 119.80036 * 179.97438 * 12 11 10 40 40 H 1.07999 * 119.96687 * 180.02562 * 13 12 11 41 41 H 0.97005 * 119.99438 * 179.97438 * 19 18 16 42 42 H 1.09005 * 109.58711 * 173.65027 * 24 6 5 43 43 H 1.09001 * 109.58898 * 293.92320 * 24 6 5 44 44 H 0.96701 * 116.99808 * 179.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7206 -1.2501 5 6 3.5756 -0.6847 -1.2642 6 7 4.0679 -1.2488 0.0001 7 6 4.9621 -2.2571 0.0000 8 8 5.2854 -2.7829 -1.0476 9 6 5.5488 -2.7229 1.2710 10 6 6.1707 -1.8157 2.1317 11 6 6.7207 -2.2578 3.3157 12 6 6.6565 -3.5987 3.6593 13 6 6.0412 -4.5060 2.8207 14 6 5.4808 -4.0786 1.6246 15 8 4.8767 -4.9679 0.7995 16 6 4.7533 -6.2332 1.2484 17 1 5.1995 -6.5181 2.1897 18 6 4.0533 -7.1689 0.5012 19 7 3.5103 -6.8219 -0.6453 20 14 3.8818 -8.9218 1.1235 21 1 3.0941 -9.7182 0.1486 22 1 5.2294 -9.5249 1.2820 23 1 3.1848 -8.9157 2.4347 24 6 3.5713 -0.6886 1.2643 25 6 2.0398 -0.7208 1.2500 26 1 1.6978 -1.7557 1.2382 27 6 1.5107 -0.0303 2.4807 28 8 0.7964 0.9379 2.3700 29 8 1.8331 -0.4908 3.6996 30 1 -0.3634 0.5142 0.8897 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3633 -1.0277 0.0005 33 1 1.6979 -1.7556 -1.2384 34 1 1.6568 -0.2209 -2.1398 35 1 3.9188 0.3451 -1.3630 36 1 3.9488 -1.2781 -2.0989 37 1 6.2233 -0.7696 1.8686 38 1 7.2044 -1.5558 3.9788 39 1 7.0907 -3.9360 4.5890 40 1 5.9949 -5.5494 3.0956 41 1 3.0211 -7.4765 -1.1680 42 1 3.9416 -1.2846 2.0985 43 1 3.9163 0.3400 1.3687 44 1 1.4700 -0.0146 4.4589 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589350033.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:30 Heat of formation + Delta-G solvation = -148.927572 kcal Electronic energy + Delta-G solvation = -29838.025373 eV Core-core repulsion = 25720.132383 eV Total energy + Delta-G solvation = -4117.892991 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.02301 -41.23031 -40.13970 -38.49213 -38.04511 -37.13024 -34.90359 -34.33633 -32.93623 -31.83559 -30.61629 -29.34992 -27.39915 -25.88300 -25.32900 -23.63628 -23.34763 -22.72446 -21.25823 -20.43494 -19.88657 -19.04228 -18.92513 -18.09682 -17.50232 -17.28945 -16.66104 -16.50637 -16.35282 -15.76821 -15.71235 -15.46928 -15.37201 -15.20048 -14.93229 -14.51814 -14.44206 -14.32115 -14.03956 -13.78253 -13.55701 -13.09206 -13.00440 -12.90640 -12.69217 -12.60422 -12.53893 -12.37798 -12.36334 -12.16345 -11.99534 -11.97447 -11.61209 -11.44797 -11.13100 -10.82856 -10.74539 -9.81196 -9.67350 -9.04348 -8.47501 -6.17421 0.26204 0.72076 1.09145 1.32666 1.44736 1.49762 1.68856 1.97590 2.15323 2.20960 2.81960 3.15516 3.39393 3.44127 3.55928 3.68421 3.81909 3.99443 4.10030 4.14297 4.28166 4.38268 4.38790 4.41491 4.54657 4.59690 4.63434 4.66057 4.69570 4.79722 4.88026 4.96723 5.01546 5.05960 5.09164 5.15153 5.29097 5.34616 5.50682 5.56505 5.63506 5.69111 5.71872 5.95452 6.17297 6.33242 6.94339 7.01136 7.23110 7.75907 8.74070 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.010548 B = 0.004424 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.953473 B = 6327.884952 C = 7009.491794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.065 4.065 3 H 0.098 0.902 4 C -0.122 4.122 5 C 0.105 3.895 6 N -0.607 5.607 7 C 0.572 3.428 8 O -0.579 6.579 9 C -0.231 4.231 10 C -0.036 4.036 11 C -0.189 4.189 12 C -0.045 4.045 13 C -0.249 4.249 14 C 0.146 3.854 15 O -0.213 6.213 16 C -0.419 4.419 17 H 0.107 0.893 18 C -0.022 4.022 19 N -0.914 5.914 20 Si 1.020 2.980 21 H -0.275 1.275 22 H -0.256 1.256 23 H -0.252 1.252 24 C 0.122 3.878 25 C -0.097 4.097 26 H 0.090 0.910 27 C 0.502 3.498 28 O -0.523 6.523 29 O -0.510 6.510 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.041 0.959 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.152 0.848 38 H 0.164 0.836 39 H 0.154 0.846 40 H 0.124 0.876 41 H 0.271 0.729 42 H 0.097 0.903 43 H 0.106 0.894 44 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.015 16.030 9.900 18.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.083 4.083 3 H 0.117 0.883 4 C -0.160 4.160 5 C -0.016 4.016 6 N -0.340 5.340 7 C 0.362 3.638 8 O -0.459 6.459 9 C -0.235 4.235 10 C -0.055 4.055 11 C -0.208 4.208 12 C -0.063 4.063 13 C -0.268 4.268 14 C 0.093 3.907 15 O -0.117 6.117 16 C -0.495 4.495 17 H 0.125 0.875 18 C -0.220 4.220 19 N -0.551 5.551 20 Si 0.838 3.162 21 H -0.199 1.199 22 H -0.180 1.180 23 H -0.176 1.176 24 C -0.001 4.001 25 C -0.117 4.117 26 H 0.108 0.892 27 C 0.345 3.655 28 O -0.413 6.413 29 O -0.324 6.324 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.083 0.917 37 H 0.169 0.831 38 H 0.181 0.819 39 H 0.172 0.828 40 H 0.142 0.858 41 H 0.080 0.920 42 H 0.115 0.885 43 H 0.124 0.876 44 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -2.106 15.736 8.572 18.043 hybrid contribution -0.542 -1.181 0.147 1.308 sum -2.648 14.555 8.719 17.172 Atomic orbital electron populations 1.22072 0.94005 1.01482 1.03916 1.20963 0.96807 0.99686 0.90859 0.88331 1.22034 0.94228 1.00521 0.99237 1.21872 0.94499 0.99586 0.85660 1.47973 1.42745 1.35213 1.08109 1.18542 0.78581 0.77964 0.88674 1.90742 1.63332 1.56416 1.35398 1.19076 1.13979 0.91783 0.98688 1.21162 0.93716 0.98302 0.92281 1.21144 1.05514 0.96032 0.98067 1.21395 0.93684 0.93055 0.98181 1.21283 1.07509 1.01601 0.96382 1.19900 0.91322 0.89271 0.90229 1.84002 1.67822 1.19557 1.40327 1.21896 1.36146 0.83462 1.07980 0.87530 1.26684 0.94918 1.04971 0.95443 1.70249 1.33906 1.37123 1.13794 0.84645 0.79452 0.73658 0.78426 1.19939 1.18035 1.17623 1.21793 0.90525 1.01244 0.86526 1.21508 0.97654 1.01179 0.91377 0.89195 1.22890 0.76758 0.81083 0.84800 1.90638 1.36008 1.27309 1.87330 1.84573 1.70985 1.59841 1.16959 0.90702 0.90874 0.94133 0.94043 0.87432 0.87892 0.91661 0.83071 0.81874 0.82830 0.85835 0.92001 0.88482 0.87597 0.70807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 8.85 71.98 0.64 -2.78 16 2 C -0.06 -1.43 1.87 -10.77 -0.02 -1.45 16 3 H 0.10 1.86 8.13 -2.39 -0.02 1.84 16 4 C -0.12 -3.05 5.38 30.82 0.17 -2.89 16 5 C 0.11 3.02 6.47 86.51 0.56 3.58 16 6 N -0.61 -20.37 2.97 -821.82 -2.44 -22.80 16 7 C 0.57 25.84 6.82 86.69 0.59 26.43 16 8 O -0.58 -32.66 16.18 -0.93 -0.02 -32.68 16 9 C -0.23 -9.84 4.62 -19.99 -0.09 -9.93 16 10 C -0.04 -1.10 7.77 22.52 0.18 -0.92 16 11 C -0.19 -4.91 10.02 22.25 0.22 -4.69 16 12 C -0.05 -1.35 10.03 22.30 0.22 -1.13 16 13 C -0.25 -10.29 9.16 22.36 0.20 -10.09 16 14 C 0.15 7.32 6.65 22.91 0.15 7.47 16 15 O -0.21 -13.19 8.96 -17.02 -0.15 -13.34 16 16 C -0.42 -24.74 9.49 67.93 0.64 -24.09 16 17 H 0.11 5.63 5.20 -2.91 -0.02 5.62 16 18 C -0.02 -1.27 5.49 84.85 0.47 -0.80 16 19 N -0.91 -58.40 13.67 21.62 0.30 -58.10 16 20 Si 1.02 43.43 29.55 68.60 2.03 45.46 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 22 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 23 H -0.25 -9.88 7.11 99.48 0.71 -9.18 16 24 C 0.12 3.10 4.77 86.36 0.41 3.51 16 25 C -0.10 -2.41 2.33 -11.46 -0.03 -2.44 16 26 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 27 C 0.50 10.99 7.34 71.24 0.52 11.52 16 28 O -0.52 -12.68 14.33 21.97 0.31 -12.36 16 29 O -0.51 -9.15 13.35 -51.40 -0.69 -9.83 16 30 H 0.07 1.74 5.40 -2.39 -0.01 1.73 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.06 2.31 7.00 -2.39 -0.02 2.29 16 37 H 0.15 3.46 7.75 -2.91 -0.02 3.44 16 38 H 0.16 2.74 8.06 -2.91 -0.02 2.71 16 39 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 40 H 0.12 5.19 5.64 -2.91 -0.02 5.17 16 41 H 0.27 15.94 8.31 -92.70 -0.77 15.17 16 42 H 0.10 2.70 5.39 -2.38 -0.01 2.69 16 43 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.43 3.41 9.10 -74.06 -0.67 2.74 16 Total: -1.00 -87.18 362.42 4.56 -82.62 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: 0.38 Total: 29.74 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: 4.84 Total: -8.69 kcal Atomic # 7 Polarization: -78.76 SS G_CDS: -2.14 Total: -80.91 kcal Atomic # 8 Polarization: -67.68 SS G_CDS: -0.54 Total: -68.22 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -87.18 4.56 -82.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589350033.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.311 kcal (2) G-P(sol) polarization free energy of solvation -87.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds