Wall clock time and date at job start Tue Mar 31 2020 17:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46151 * 2 1 4 4 C 1.53032 * 109.44874 * 240.03733 * 2 1 3 5 5 C 1.52759 * 109.38423 * 301.22385 * 4 2 1 6 6 N 1.46934 * 109.00723 * 305.59253 * 5 4 2 7 7 C 1.34783 * 120.62806 * 233.58272 * 6 5 4 8 8 O 1.21592 * 119.99650 * 355.65096 * 7 6 5 9 9 C 1.47529 * 119.99913 * 175.65648 * 7 6 5 10 10 C 1.39660 * 120.20052 * 54.93799 * 9 7 6 11 11 C 1.37831 * 119.92433 * 179.97438 * 10 9 7 12 12 C 1.38570 * 120.32011 * 359.97438 * 11 10 9 13 13 C 1.38031 * 120.40424 * 0.02562 * 12 11 10 14 14 C 1.38835 * 120.06995 * 0.25612 * 13 12 11 15 15 O 1.35521 * 120.16223 * 179.74298 * 14 13 12 16 16 C 1.34812 * 117.00107 * 5.57844 * 15 14 13 17 17 H 1.08004 * 119.99646 * 5.33751 * 16 15 14 18 18 C 1.38691 * 120.00157 * 185.33982 * 16 15 14 19 19 N 1.31513 * 120.00293 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99907 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47458 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46951 * 120.00182 * 20 18 16 23 23 H 1.48502 * 109.47235 * 239.99955 * 20 18 16 24 24 C 1.46927 * 118.73834 * 53.30537 * 6 5 4 25 25 C 1.53038 * 109.46239 * 119.97184 * 2 1 3 26 26 H 1.09005 * 109.52761 * 178.61035 * 25 2 1 27 27 C 1.50698 * 109.49824 * 298.69221 * 25 2 1 28 28 O 1.20827 * 120.00193 * 359.83289 * 27 25 2 29 29 O 1.34226 * 120.00082 * 179.83968 * 27 25 2 30 30 H 1.09004 * 109.47198 * 300.02549 * 1 2 3 31 31 H 1.09002 * 109.47064 * 60.02617 * 1 2 3 32 32 H 1.08995 * 109.47514 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.50588 * 61.29843 * 4 2 1 34 34 H 1.09008 * 109.50280 * 181.36684 * 4 2 1 35 35 H 1.09000 * 109.51455 * 185.70742 * 5 4 2 36 36 H 1.09000 * 109.43121 * 65.42297 * 5 4 2 37 37 H 1.08003 * 120.04008 * 359.97438 * 10 9 7 38 38 H 1.08000 * 119.84321 * 180.02562 * 11 10 9 39 39 H 1.08005 * 119.80047 * 180.02562 * 12 11 10 40 40 H 1.07997 * 119.96958 * 179.97438 * 13 12 11 41 41 H 0.96996 * 120.00717 * 180.02562 * 19 18 16 42 42 H 1.08998 * 109.58501 * 66.43230 * 24 6 5 43 43 H 1.08996 * 109.58207 * 186.71553 * 24 6 5 44 44 H 0.96703 * 117.00150 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0395 -0.7207 -1.2501 5 6 1.5039 -2.1513 -1.2644 6 7 1.8620 -2.8089 -0.0001 7 6 2.5157 -3.9875 -0.0003 8 8 2.7449 -4.5554 -1.0507 9 6 2.9530 -4.5887 1.2740 10 6 2.0297 -4.8158 2.2970 11 6 2.4444 -5.3782 3.4851 12 6 3.7743 -5.7206 3.6704 13 6 4.6981 -5.5020 2.6684 14 6 4.2996 -4.9311 1.4672 15 8 5.2060 -4.7108 0.4841 16 6 6.4556 -5.1733 0.6889 17 1 6.6750 -5.7668 1.5642 18 6 7.4594 -4.8869 -0.2243 19 7 7.1924 -4.1637 -1.2898 20 14 9.1911 -5.5271 0.0600 21 1 9.2292 -6.3082 1.3224 22 1 9.5884 -6.4001 -1.0738 23 1 10.1323 -4.3826 0.1569 24 6 1.4993 -2.1541 1.2642 25 6 2.0399 -0.7209 1.2500 26 1 3.1296 -0.7431 1.2387 27 6 1.5644 0.0082 2.4802 28 8 0.8896 1.0043 2.3692 29 8 1.8907 -0.4489 3.6993 30 1 -0.3634 0.5142 0.8898 31 1 -0.3633 0.5134 -0.8902 32 1 -0.3634 -1.0276 0.0005 33 1 1.6954 -0.1934 -2.1399 34 1 3.1293 -0.7425 -1.2389 35 1 1.9456 -2.6971 -2.0981 36 1 0.4194 -2.1314 -1.3715 37 1 0.9920 -4.5511 2.1574 38 1 1.7293 -5.5537 4.2751 39 1 4.0900 -6.1612 4.6046 40 1 5.7329 -5.7711 2.8205 41 1 7.8942 -3.9637 -1.9287 42 1 0.4144 -2.1345 1.3674 43 1 1.9358 -2.7033 2.0984 44 1 1.5623 0.0521 4.4584 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589350036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:37 Heat of formation + Delta-G solvation = -120.830106 kcal Electronic energy + Delta-G solvation = -29969.488264 eV Core-core repulsion = 25852.813671 eV Total energy + Delta-G solvation = -4116.674593 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.01486 -39.82263 -38.70427 -37.24309 -36.41772 -36.15074 -33.36641 -32.39144 -31.80897 -30.32656 -29.02553 -27.87830 -25.48752 -25.03906 -24.53392 -22.80765 -21.92434 -21.32173 -19.80525 -18.41957 -18.10462 -18.09359 -17.28624 -16.75363 -16.28058 -16.09389 -15.37968 -15.10463 -14.76544 -14.61403 -14.42854 -14.17127 -14.08379 -13.70540 -13.66624 -13.44394 -13.01452 -12.86651 -12.55201 -12.32733 -12.10409 -11.78775 -11.74574 -11.57826 -11.40753 -11.34026 -11.16955 -11.02789 -10.86728 -10.82277 -10.74183 -10.56603 -10.46737 -10.21530 -9.66572 -9.09772 -8.91547 -8.32231 -8.23485 -7.37165 -6.51357 -4.10557 1.78732 2.06609 2.25279 2.87992 3.09218 3.10067 3.15998 3.30792 3.50305 3.89866 4.42348 4.44659 4.69805 4.80994 5.00407 5.04097 5.06785 5.13147 5.20015 5.31434 5.43301 5.44828 5.50305 5.63343 5.66989 5.72386 5.74723 5.78750 5.94748 5.97662 6.08156 6.12303 6.13649 6.23646 6.34224 6.51282 6.52272 6.60566 6.85014 6.91887 7.01340 7.21164 7.24971 7.63921 7.78733 7.80526 7.91188 8.82071 8.91817 9.59353 10.64686 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011950 B = 0.004268 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.480863 B = 6559.499719 C = 7271.080812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.073 4.073 3 H 0.080 0.920 4 C -0.131 4.131 5 C 0.111 3.889 6 N -0.614 5.614 7 C 0.582 3.418 8 O -0.517 6.517 9 C -0.218 4.218 10 C -0.045 4.045 11 C -0.220 4.220 12 C -0.055 4.055 13 C -0.232 4.232 14 C 0.187 3.813 15 O -0.151 6.151 16 C -0.396 4.396 17 H 0.095 0.905 18 C 0.044 3.956 19 N -0.846 5.846 20 Si 0.942 3.058 21 H -0.265 1.265 22 H -0.274 1.274 23 H -0.275 1.275 24 C 0.117 3.883 25 C -0.096 4.096 26 H 0.117 0.883 27 C 0.490 3.510 28 O -0.513 6.513 29 O -0.509 6.509 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.065 0.935 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.132 0.868 41 H 0.271 0.729 42 H 0.070 0.930 43 H 0.110 0.890 44 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.014 6.933 7.677 15.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.091 4.091 3 H 0.098 0.902 4 C -0.169 4.169 5 C -0.011 4.011 6 N -0.349 5.349 7 C 0.372 3.628 8 O -0.391 6.391 9 C -0.222 4.222 10 C -0.064 4.064 11 C -0.239 4.239 12 C -0.073 4.073 13 C -0.251 4.251 14 C 0.130 3.870 15 O -0.051 6.051 16 C -0.472 4.472 17 H 0.112 0.888 18 C -0.163 4.163 19 N -0.479 5.479 20 Si 0.766 3.234 21 H -0.189 1.189 22 H -0.200 1.200 23 H -0.201 1.201 24 C -0.007 4.007 25 C -0.116 4.116 26 H 0.135 0.865 27 C 0.332 3.668 28 O -0.401 6.401 29 O -0.320 6.320 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.083 0.917 37 H 0.132 0.868 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.150 0.850 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.128 0.872 44 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -10.781 6.845 6.239 14.214 hybrid contribution 0.767 0.159 0.824 1.137 sum -10.015 7.005 7.064 14.116 Atomic orbital electron populations 1.22149 0.94558 1.02068 1.03159 1.20950 0.96760 0.99192 0.92228 0.90209 1.21907 1.02102 0.95574 0.97292 1.21474 0.99418 0.92678 0.87518 1.47927 1.59468 1.21589 1.05923 1.18207 0.75664 0.79727 0.89207 1.90779 1.53844 1.61204 1.33244 1.18690 0.92452 1.14966 0.96109 1.20701 0.97241 0.96486 0.91973 1.20472 0.96058 1.09225 0.98171 1.20893 0.93015 0.95999 0.97413 1.21147 1.00903 1.08787 0.94304 1.19185 0.88732 0.91218 0.87886 1.84006 1.19134 1.66167 1.35826 1.21445 0.82757 1.32578 1.10443 0.88775 1.25345 0.99724 0.96331 0.94889 1.70061 1.33863 1.34086 1.09898 0.85638 0.80222 0.78642 0.78875 1.18947 1.19989 1.20057 1.21738 0.99711 0.90420 0.88825 1.21543 1.03909 0.96395 0.89729 0.86492 1.23352 0.76149 0.82629 0.84646 1.90654 1.36373 1.25945 1.87152 1.84621 1.72747 1.57951 1.16704 0.90693 0.92485 0.92488 0.90162 0.90704 0.88658 0.91721 0.86756 0.87106 0.87112 0.85020 0.91874 0.91227 0.87175 0.73392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 8.13 37.16 0.30 -1.44 16 2 C -0.07 -0.86 2.35 -90.59 -0.21 -1.07 16 3 H 0.08 0.94 8.07 -51.93 -0.42 0.52 16 4 C -0.13 -1.65 5.61 -26.84 -0.15 -1.80 16 5 C 0.11 1.63 5.93 -3.93 -0.02 1.60 16 6 N -0.61 -10.24 2.98 -174.26 -0.52 -10.75 16 7 C 0.58 12.56 6.83 -12.47 -0.09 12.47 16 8 O -0.52 -13.42 16.24 3.41 0.06 -13.36 16 9 C -0.22 -4.58 4.87 -104.81 -0.51 -5.09 16 10 C -0.05 -0.76 7.44 -39.20 -0.29 -1.05 16 11 C -0.22 -3.47 10.03 -39.61 -0.40 -3.87 16 12 C -0.05 -0.93 10.03 -39.53 -0.40 -1.32 16 13 C -0.23 -4.82 9.13 -39.44 -0.36 -5.18 16 14 C 0.19 4.49 6.65 -38.59 -0.26 4.23 16 15 O -0.15 -4.31 8.99 -1.08 -0.01 -4.32 16 16 C -0.40 -10.94 9.44 30.90 0.29 -10.65 16 17 H 0.09 2.37 5.29 -52.48 -0.28 2.10 16 18 C 0.04 1.18 5.49 -17.52 -0.10 1.09 16 19 N -0.85 -24.80 13.67 55.48 0.76 -24.05 16 20 Si 0.94 20.22 29.55 -169.99 -5.02 15.19 16 21 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 23 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 24 C 0.12 1.58 4.31 -3.71 -0.02 1.56 16 25 C -0.10 -1.22 2.56 -91.66 -0.23 -1.45 16 26 H 0.12 1.64 8.14 -51.93 -0.42 1.21 16 27 C 0.49 5.81 7.34 36.00 0.26 6.08 16 28 O -0.51 -6.86 14.51 -18.75 -0.27 -7.14 16 29 O -0.51 -5.07 13.35 -39.25 -0.52 -5.60 16 30 H 0.07 0.88 5.64 -51.93 -0.29 0.59 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.60 4.99 -51.93 -0.26 0.34 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 35 H 0.10 1.62 7.03 -51.93 -0.36 1.26 16 36 H 0.06 0.79 6.70 -51.93 -0.35 0.45 16 37 H 0.11 1.60 7.43 -52.48 -0.39 1.21 16 38 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 40 H 0.13 2.72 5.71 -52.49 -0.30 2.42 16 41 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.07 0.80 6.69 -51.93 -0.35 0.45 16 43 H 0.11 1.58 4.77 -51.93 -0.25 1.34 16 44 H 0.41 2.16 9.10 45.56 0.41 2.57 16 LS Contribution 355.16 15.07 5.35 5.35 Total: -1.00 -34.82 355.16 -6.86 -41.68 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -4.50 Total: 8.89 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -2.17 Total: -5.90 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: 0.24 Total: -34.80 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -0.75 Total: -30.41 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.82 -6.86 -41.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589350036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.155 kcal (2) G-P(sol) polarization free energy of solvation -34.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds