Wall clock time and date at job start Tue Mar 31 2020 17:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46151 * 2 1 4 4 C 1.53032 * 109.44874 * 240.03733 * 2 1 3 5 5 C 1.52759 * 109.38423 * 301.22385 * 4 2 1 6 6 N 1.46934 * 109.00723 * 305.59253 * 5 4 2 7 7 C 1.34783 * 120.62806 * 233.58272 * 6 5 4 8 8 O 1.21592 * 119.99650 * 355.65096 * 7 6 5 9 9 C 1.47529 * 119.99913 * 175.65648 * 7 6 5 10 10 C 1.39660 * 120.20052 * 54.93799 * 9 7 6 11 11 C 1.37831 * 119.92433 * 179.97438 * 10 9 7 12 12 C 1.38570 * 120.32011 * 359.97438 * 11 10 9 13 13 C 1.38031 * 120.40424 * 0.02562 * 12 11 10 14 14 C 1.38835 * 120.06995 * 0.25612 * 13 12 11 15 15 O 1.35521 * 120.16223 * 179.74298 * 14 13 12 16 16 C 1.34812 * 117.00107 * 5.57844 * 15 14 13 17 17 H 1.08004 * 119.99646 * 5.33751 * 16 15 14 18 18 C 1.38691 * 120.00157 * 185.33982 * 16 15 14 19 19 N 1.31513 * 120.00293 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99907 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47458 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46951 * 120.00182 * 20 18 16 23 23 H 1.48502 * 109.47235 * 239.99955 * 20 18 16 24 24 C 1.46927 * 118.73834 * 53.30537 * 6 5 4 25 25 C 1.53038 * 109.46239 * 119.97184 * 2 1 3 26 26 H 1.09005 * 109.52761 * 178.61035 * 25 2 1 27 27 C 1.50698 * 109.49824 * 298.69221 * 25 2 1 28 28 O 1.20827 * 120.00193 * 359.83289 * 27 25 2 29 29 O 1.34226 * 120.00082 * 179.83968 * 27 25 2 30 30 H 1.09004 * 109.47198 * 300.02549 * 1 2 3 31 31 H 1.09002 * 109.47064 * 60.02617 * 1 2 3 32 32 H 1.08995 * 109.47514 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.50588 * 61.29843 * 4 2 1 34 34 H 1.09008 * 109.50280 * 181.36684 * 4 2 1 35 35 H 1.09000 * 109.51455 * 185.70742 * 5 4 2 36 36 H 1.09000 * 109.43121 * 65.42297 * 5 4 2 37 37 H 1.08003 * 120.04008 * 359.97438 * 10 9 7 38 38 H 1.08000 * 119.84321 * 180.02562 * 11 10 9 39 39 H 1.08005 * 119.80047 * 180.02562 * 12 11 10 40 40 H 1.07997 * 119.96958 * 179.97438 * 13 12 11 41 41 H 0.96996 * 120.00717 * 180.02562 * 19 18 16 42 42 H 1.08998 * 109.58501 * 66.43230 * 24 6 5 43 43 H 1.08996 * 109.58207 * 186.71553 * 24 6 5 44 44 H 0.96703 * 117.00150 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0395 -0.7207 -1.2501 5 6 1.5039 -2.1513 -1.2644 6 7 1.8620 -2.8089 -0.0001 7 6 2.5157 -3.9875 -0.0003 8 8 2.7449 -4.5554 -1.0507 9 6 2.9530 -4.5887 1.2740 10 6 2.0297 -4.8158 2.2970 11 6 2.4444 -5.3782 3.4851 12 6 3.7743 -5.7206 3.6704 13 6 4.6981 -5.5020 2.6684 14 6 4.2996 -4.9311 1.4672 15 8 5.2060 -4.7108 0.4841 16 6 6.4556 -5.1733 0.6889 17 1 6.6750 -5.7668 1.5642 18 6 7.4594 -4.8869 -0.2243 19 7 7.1924 -4.1637 -1.2898 20 14 9.1911 -5.5271 0.0600 21 1 9.2292 -6.3082 1.3224 22 1 9.5884 -6.4001 -1.0738 23 1 10.1323 -4.3826 0.1569 24 6 1.4993 -2.1541 1.2642 25 6 2.0399 -0.7209 1.2500 26 1 3.1296 -0.7431 1.2387 27 6 1.5644 0.0082 2.4802 28 8 0.8896 1.0043 2.3692 29 8 1.8907 -0.4489 3.6993 30 1 -0.3634 0.5142 0.8898 31 1 -0.3633 0.5134 -0.8902 32 1 -0.3634 -1.0276 0.0005 33 1 1.6954 -0.1934 -2.1399 34 1 3.1293 -0.7425 -1.2389 35 1 1.9456 -2.6971 -2.0981 36 1 0.4194 -2.1314 -1.3715 37 1 0.9920 -4.5511 2.1574 38 1 1.7293 -5.5537 4.2751 39 1 4.0900 -6.1612 4.6046 40 1 5.7329 -5.7711 2.8205 41 1 7.8942 -3.9637 -1.9287 42 1 0.4144 -2.1345 1.3674 43 1 1.9358 -2.7033 2.0984 44 1 1.5623 0.0521 4.4584 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589350036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:36 Heat of formation + Delta-G solvation = -145.603956 kcal Electronic energy + Delta-G solvation = -29970.562539 eV Core-core repulsion = 25852.813671 eV Total energy + Delta-G solvation = -4117.748868 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.14154 -41.22176 -40.18589 -38.64266 -38.06517 -37.10231 -34.70674 -34.33713 -33.00518 -31.74375 -30.62093 -28.92090 -27.41825 -26.31980 -25.64732 -24.13953 -23.36412 -22.60687 -21.15741 -19.91920 -19.64987 -19.03895 -18.73724 -18.18654 -17.45153 -17.35978 -16.72176 -16.55523 -16.39141 -15.94490 -15.67726 -15.50423 -15.42919 -15.37903 -15.11410 -14.53930 -14.43651 -14.38939 -13.99870 -13.65797 -13.53500 -13.09577 -12.96958 -12.76386 -12.69702 -12.62145 -12.51769 -12.36590 -12.29118 -12.10400 -11.98529 -11.86077 -11.67587 -11.46948 -11.20936 -10.85126 -10.74455 -9.79044 -9.64306 -9.04411 -8.48427 -6.17514 0.26097 0.70968 1.10395 1.32862 1.42422 1.51980 1.67627 1.96223 2.14854 2.20611 2.81076 3.14922 3.38538 3.43749 3.57436 3.69482 3.85828 3.98067 4.08107 4.13426 4.27140 4.32767 4.39503 4.40752 4.53410 4.56167 4.63637 4.69079 4.71304 4.76426 4.88084 4.95996 5.07140 5.09337 5.12685 5.15221 5.24899 5.40801 5.50659 5.54840 5.61742 5.69118 5.71572 5.95401 6.16804 6.32944 6.94164 7.01782 7.22133 7.75377 8.73977 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011950 B = 0.004268 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.480863 B = 6559.499719 C = 7271.080812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.068 4.068 3 H 0.082 0.918 4 C -0.123 4.123 5 C 0.107 3.893 6 N -0.604 5.604 7 C 0.572 3.428 8 O -0.579 6.579 9 C -0.230 4.230 10 C -0.039 4.039 11 C -0.188 4.188 12 C -0.046 4.046 13 C -0.247 4.247 14 C 0.146 3.854 15 O -0.214 6.214 16 C -0.416 4.416 17 H 0.106 0.894 18 C -0.022 4.022 19 N -0.914 5.914 20 Si 1.020 2.980 21 H -0.246 1.246 22 H -0.272 1.272 23 H -0.267 1.267 24 C 0.116 3.884 25 C -0.098 4.098 26 H 0.094 0.906 27 C 0.502 3.498 28 O -0.525 6.525 29 O -0.508 6.508 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.107 0.893 34 H 0.042 0.958 35 H 0.061 0.939 36 H 0.100 0.900 37 H 0.152 0.848 38 H 0.165 0.835 39 H 0.154 0.846 40 H 0.123 0.877 41 H 0.271 0.729 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.688 7.053 11.480 19.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.086 4.086 3 H 0.101 0.899 4 C -0.162 4.162 5 C -0.015 4.015 6 N -0.337 5.337 7 C 0.362 3.638 8 O -0.459 6.459 9 C -0.234 4.234 10 C -0.058 4.058 11 C -0.206 4.206 12 C -0.064 4.064 13 C -0.267 4.267 14 C 0.093 3.907 15 O -0.118 6.118 16 C -0.492 4.492 17 H 0.124 0.876 18 C -0.220 4.220 19 N -0.551 5.551 20 Si 0.839 3.161 21 H -0.169 1.169 22 H -0.198 1.198 23 H -0.192 1.192 24 C -0.006 4.006 25 C -0.118 4.118 26 H 0.112 0.888 27 C 0.345 3.655 28 O -0.415 6.415 29 O -0.322 6.322 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.125 0.875 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.118 0.882 37 H 0.170 0.830 38 H 0.182 0.818 39 H 0.172 0.828 40 H 0.141 0.859 41 H 0.080 0.920 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -13.528 7.000 10.152 18.305 hybrid contribution 1.235 0.136 -0.066 1.244 sum -12.293 7.135 10.086 17.429 Atomic orbital electron populations 1.22084 0.92857 1.02489 1.03729 1.20921 0.97966 0.98834 0.90909 0.89938 1.21858 1.00133 0.94767 0.99398 1.21656 1.01215 0.92952 0.85650 1.47954 1.57604 1.20158 1.08027 1.18531 0.75585 0.80903 0.88756 1.90738 1.56561 1.63410 1.35177 1.19063 0.92264 1.15010 0.97075 1.21174 0.98137 0.95352 0.91111 1.21149 0.96296 1.04796 0.98336 1.21400 0.92890 0.94438 0.97644 1.21290 1.01701 1.09220 0.94447 1.19880 0.89435 0.92627 0.88775 1.83986 1.20008 1.69238 1.38609 1.21944 0.83209 1.33066 1.10984 0.87630 1.26664 1.04451 0.96545 0.94354 1.70234 1.35424 1.37609 1.11883 0.84519 0.73965 0.78241 0.79383 1.16872 1.19752 1.19183 1.21951 1.01572 0.90320 0.86789 1.21470 1.02673 0.96361 0.91319 0.88791 1.22877 0.75705 0.82119 0.84830 1.90662 1.37037 1.26371 1.87445 1.84562 1.72542 1.58221 1.16873 0.91104 0.90991 0.92006 0.87454 0.93870 0.92046 0.88213 0.82998 0.81783 0.82816 0.85878 0.91976 0.87804 0.87760 0.70794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.13 71.98 0.59 -2.25 16 2 C -0.07 -1.51 2.35 -10.77 -0.03 -1.53 16 3 H 0.08 1.83 8.07 -2.38 -0.02 1.81 16 4 C -0.12 -3.15 5.61 30.52 0.17 -2.98 16 5 C 0.11 3.18 5.93 86.22 0.51 3.69 16 6 N -0.60 -20.39 2.98 -823.48 -2.45 -22.84 16 7 C 0.57 25.85 6.83 86.69 0.59 26.44 16 8 O -0.58 -32.61 16.24 -2.21 -0.04 -32.64 16 9 C -0.23 -9.79 4.87 -19.99 -0.10 -9.88 16 10 C -0.04 -1.19 7.44 22.52 0.17 -1.02 16 11 C -0.19 -4.84 10.03 22.25 0.22 -4.62 16 12 C -0.05 -1.37 10.03 22.30 0.22 -1.14 16 13 C -0.25 -10.24 9.13 22.36 0.20 -10.04 16 14 C 0.15 7.31 6.65 22.91 0.15 7.46 16 15 O -0.21 -13.24 8.99 -18.25 -0.16 -13.41 16 16 C -0.42 -24.62 9.44 67.93 0.64 -23.98 16 17 H 0.11 5.64 5.29 -2.91 -0.02 5.62 16 18 C -0.02 -1.27 5.49 84.85 0.47 -0.81 16 19 N -0.91 -58.25 13.67 21.62 0.30 -57.96 16 20 Si 1.02 43.57 29.55 68.60 2.03 45.60 16 21 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 22 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 23 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 24 C 0.12 2.91 4.31 86.36 0.37 3.28 16 25 C -0.10 -2.39 2.56 -11.46 -0.03 -2.42 16 26 H 0.09 2.74 8.14 -2.38 -0.02 2.72 16 27 C 0.50 10.71 7.34 71.24 0.52 11.23 16 28 O -0.53 -12.66 14.51 21.96 0.32 -12.34 16 29 O -0.51 -8.55 13.35 -51.38 -0.69 -9.23 16 30 H 0.07 1.42 5.64 -2.38 -0.01 1.41 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.06 4.99 -2.39 -0.01 1.05 16 33 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.06 2.27 7.03 -2.39 -0.02 2.25 16 36 H 0.10 2.28 6.70 -2.39 -0.02 2.26 16 37 H 0.15 3.46 7.43 -2.91 -0.02 3.44 16 38 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 39 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 40 H 0.12 5.20 5.71 -2.91 -0.02 5.18 16 41 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 42 H 0.10 1.96 6.69 -2.39 -0.02 1.94 16 43 H 0.10 2.75 4.77 -2.39 -0.01 2.74 16 44 H 0.43 3.00 9.10 -74.06 -0.67 2.32 16 Total: -1.00 -86.97 355.16 4.38 -82.59 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: 0.39 Total: 28.80 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 4.68 Total: -8.57 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -2.16 Total: -80.80 kcal Atomic # 8 Polarization: -67.06 SS G_CDS: -0.57 Total: -67.62 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -86.97 4.38 -82.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589350036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.015 kcal (2) G-P(sol) polarization free energy of solvation -86.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds