Wall clock time and date at job start Tue Mar 31 2020 17:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.52093 * 2 1 4 4 C 1.53191 * 109.49986 * 120.08183 * 2 1 3 5 5 N 1.46925 * 108.89440 * 174.66115 * 4 2 1 6 6 C 1.34779 * 120.62757 * 126.33941 * 5 4 2 7 7 O 1.21585 * 120.00740 * 354.17526 * 6 5 4 8 8 C 1.47541 * 119.99586 * 174.17224 * 6 5 4 9 9 C 1.39664 * 120.19855 * 306.19018 * 8 6 5 10 10 C 1.37832 * 119.91993 * 179.71917 * 9 8 6 11 11 C 1.38575 * 120.31845 * 0.55703 * 10 9 8 12 12 C 1.38031 * 120.40577 * 359.71588 * 11 10 9 13 13 C 1.38830 * 120.06759 * 0.02562 * 12 11 10 14 14 O 1.35526 * 120.16046 * 180.02562 * 13 12 11 15 15 C 1.34810 * 116.99867 * 5.42977 * 14 13 12 16 16 H 1.08008 * 120.00131 * 354.95337 * 15 14 13 17 17 C 1.38699 * 120.00144 * 174.95464 * 15 14 13 18 18 N 1.31516 * 119.99719 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00053 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47418 * 90.00047 * 19 17 15 21 21 H 1.48499 * 109.47099 * 210.00161 * 19 17 15 22 22 H 1.48503 * 109.47239 * 329.99986 * 19 17 15 23 23 C 1.46923 * 118.73837 * 306.31689 * 5 4 2 24 24 C 1.53194 * 108.77489 * 53.61370 * 23 5 4 25 25 C 1.53049 * 109.31043 * 305.36158 * 24 23 5 26 26 H 1.09004 * 109.46069 * 301.36090 * 25 24 23 27 27 C 1.50699 * 109.45972 * 181.38807 * 25 24 23 28 28 O 1.20829 * 119.99570 * 240.00168 * 27 25 24 29 29 O 1.34223 * 120.00143 * 60.00013 * 27 25 24 30 30 H 1.09000 * 109.47433 * 299.91713 * 1 2 3 31 31 H 1.08998 * 109.46909 * 59.92279 * 1 2 3 32 32 H 1.09004 * 109.46651 * 179.91696 * 1 2 3 33 33 H 1.08994 * 109.58842 * 54.79940 * 4 2 1 34 34 H 1.09004 * 109.58493 * 294.51559 * 4 2 1 35 35 H 1.08002 * 120.04179 * 359.97438 * 9 8 6 36 36 H 1.07992 * 119.84201 * 180.27154 * 10 9 8 37 37 H 1.07999 * 119.80084 * 179.74248 * 11 10 9 38 38 H 1.07995 * 119.96295 * 180.02562 * 12 11 10 39 39 H 0.97006 * 119.99977 * 179.97438 * 18 17 15 40 40 H 1.09002 * 109.58815 * 173.39550 * 23 5 4 41 41 H 1.08996 * 109.58575 * 293.82223 * 23 5 4 42 42 H 1.08996 * 109.50050 * 65.30923 * 24 23 5 43 43 H 1.08997 * 109.49506 * 185.38407 * 24 23 5 44 44 H 0.96697 * 117.00367 * 179.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0414 -0.7238 1.2495 5 7 3.5049 -0.8290 1.1730 6 6 4.2789 -0.3850 2.1831 7 8 3.7763 0.2030 3.1212 8 6 5.7363 -0.6128 2.1506 9 6 6.2420 -1.9027 1.9750 10 6 7.6045 -2.1081 1.9397 11 6 8.4768 -1.0418 2.0892 12 6 7.9915 0.2378 2.2693 13 6 6.6222 0.4642 2.3021 14 8 6.1437 1.7199 2.4782 15 6 7.0463 2.7209 2.5028 16 1 8.1023 2.4970 2.4669 17 6 6.6189 4.0385 2.5742 18 7 5.3331 4.3112 2.6184 19 14 7.8696 5.4256 2.6075 20 1 8.1666 5.8578 1.2182 21 1 7.3181 6.5710 3.3750 22 1 9.1184 4.9507 3.2558 23 6 4.1084 -1.4276 -0.0253 24 6 3.5768 -0.6972 -1.2625 25 6 2.0466 -0.7255 -1.2484 26 1 1.7026 -1.7598 -1.2348 27 6 1.5203 -0.0375 -2.4815 28 8 0.8087 0.9331 -2.3745 29 8 1.8422 -0.5029 -3.6987 30 1 -0.3634 0.5125 0.8907 31 1 -0.3633 0.5150 -0.8893 32 1 -0.3633 -1.0277 -0.0015 33 1 1.6054 -1.7216 1.2980 34 1 1.7616 -0.1592 2.1390 35 1 5.5663 -2.7378 1.8628 36 1 7.9941 -3.1055 1.7994 37 1 9.5428 -1.2129 2.0644 38 1 8.6778 1.0636 2.3847 39 1 5.0341 5.2326 2.6687 40 1 5.1926 -1.3253 0.0216 41 1 3.8409 -2.4828 -0.0808 42 1 3.9215 0.3367 -1.2508 43 1 3.9419 -1.1925 -2.1622 44 1 1.4805 -0.0287 -4.4598 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589392801.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:46 Heat of formation + Delta-G solvation = -125.246343 kcal Electronic energy + Delta-G solvation = -29523.579281 eV Core-core repulsion = 25406.713185 eV Total energy + Delta-G solvation = -4116.866096 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.87201 -39.83402 -38.62080 -37.04260 -36.39124 -36.18747 -33.52573 -32.38439 -32.01839 -30.52535 -29.00709 -27.16803 -26.25455 -25.38465 -23.15985 -22.33448 -22.03204 -21.51687 -20.09811 -19.04523 -18.14372 -18.06953 -17.28394 -16.88258 -16.21538 -15.82443 -15.61097 -14.95314 -14.76824 -14.51274 -14.23541 -14.09658 -13.87728 -13.68062 -13.63068 -13.36540 -12.95304 -12.79492 -12.57061 -12.39761 -12.16080 -11.93165 -11.76005 -11.71337 -11.46378 -11.33637 -11.14227 -11.01293 -10.93120 -10.81119 -10.76731 -10.50828 -10.48164 -10.20519 -9.63765 -9.05401 -8.91266 -8.30472 -8.23414 -7.36461 -6.49361 -4.09681 1.79276 2.09734 2.26312 2.90238 3.10107 3.10516 3.15937 3.29286 3.55676 3.90750 4.41995 4.46090 4.60316 4.84798 4.96546 5.02747 5.10950 5.16367 5.23998 5.28828 5.44237 5.50937 5.52148 5.54629 5.65784 5.71725 5.73026 5.85297 5.92814 5.98425 6.07902 6.13137 6.15930 6.22226 6.36602 6.53366 6.53520 6.61888 6.87786 6.94825 7.02010 7.21796 7.26350 7.64598 7.79365 7.83272 7.93201 8.86727 8.92878 9.60743 10.66054 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.010249 B = 0.004250 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.419292 B = 6586.602967 C = 7889.677716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.091 4.091 3 H 0.088 0.912 4 C 0.122 3.878 5 N -0.620 5.620 6 C 0.580 3.420 7 O -0.518 6.518 8 C -0.218 4.218 9 C -0.042 4.042 10 C -0.224 4.224 11 C -0.055 4.055 12 C -0.234 4.234 13 C 0.187 3.813 14 O -0.148 6.148 15 C -0.400 4.400 16 H 0.095 0.905 17 C 0.044 3.956 18 N -0.844 5.844 19 Si 0.942 3.058 20 H -0.272 1.272 21 H -0.276 1.276 22 H -0.266 1.266 23 C 0.112 3.888 24 C -0.129 4.129 25 C -0.072 4.072 26 H 0.109 0.891 27 C 0.483 3.517 28 O -0.506 6.506 29 O -0.518 6.518 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.132 0.868 39 H 0.272 0.728 40 H 0.101 0.899 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.582 -13.013 -10.380 17.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.111 4.111 3 H 0.106 0.894 4 C -0.001 4.001 5 N -0.355 5.355 6 C 0.370 3.630 7 O -0.393 6.393 8 C -0.222 4.222 9 C -0.061 4.061 10 C -0.243 4.243 11 C -0.074 4.074 12 C -0.253 4.253 13 C 0.129 3.871 14 O -0.049 6.049 15 C -0.476 4.476 16 H 0.112 0.888 17 C -0.163 4.163 18 N -0.476 5.476 19 Si 0.766 3.234 20 H -0.198 1.198 21 H -0.201 1.201 22 H -0.190 1.190 23 C -0.011 4.011 24 C -0.167 4.167 25 C -0.091 4.091 26 H 0.126 0.874 27 C 0.325 3.675 28 O -0.394 6.394 29 O -0.329 6.329 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.116 0.884 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.149 0.851 39 H 0.082 0.918 40 H 0.119 0.881 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -4.290 -12.277 -9.401 16.047 hybrid contribution 0.477 1.017 -0.623 1.285 sum -3.814 -11.260 -10.024 15.550 Atomic orbital electron populations 1.22036 0.93887 1.01649 1.03991 1.21481 0.96555 1.00868 0.92151 0.89379 1.21540 0.79940 1.00026 0.98597 1.48005 1.05965 1.62971 1.18561 1.18223 0.86363 0.76879 0.81518 1.90779 1.74720 1.39140 1.34627 1.18706 0.91493 0.93228 1.18817 1.20700 0.95302 0.93961 0.96106 1.20478 0.92928 0.98285 1.12603 1.20892 0.98649 0.92339 0.95471 1.21138 0.94933 0.97864 1.11402 1.19209 0.91104 0.86136 0.90672 1.84019 1.35723 1.10599 1.74514 1.21414 0.88765 0.83944 1.53449 0.88797 1.25365 0.97138 0.97641 0.96171 1.70074 1.13579 1.20469 1.43461 0.85703 0.79370 0.79596 0.78716 1.19779 1.20121 1.19028 1.21735 1.00123 0.95956 0.83298 1.21974 0.91910 1.03366 0.99455 1.21199 0.97681 1.00892 0.89336 0.87355 1.23593 0.77107 0.82149 0.84654 1.90671 1.35340 1.26424 1.86959 1.84541 1.71703 1.59759 1.16939 0.92040 0.90052 0.93160 0.91831 0.88351 0.86708 0.87144 0.87154 0.85066 0.91785 0.88113 0.91530 0.90394 0.89411 0.73443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 8.87 37.16 0.33 -1.58 16 2 C -0.09 -1.25 2.07 -90.34 -0.19 -1.43 16 3 H 0.09 1.52 8.13 -51.93 -0.42 1.10 16 4 C 0.12 1.78 5.72 -3.71 -0.02 1.76 16 5 N -0.62 -10.33 2.97 -174.00 -0.52 -10.84 16 6 C 0.58 12.65 6.83 -12.47 -0.09 12.56 16 7 O -0.52 -13.70 16.15 1.49 0.02 -13.67 16 8 C -0.22 -4.60 4.62 -104.81 -0.48 -5.08 16 9 C -0.04 -0.70 7.77 -39.20 -0.30 -1.00 16 10 C -0.22 -3.51 10.03 -39.61 -0.40 -3.90 16 11 C -0.06 -0.93 10.03 -39.53 -0.40 -1.33 16 12 C -0.23 -4.89 9.16 -39.44 -0.36 -5.25 16 13 C 0.19 4.51 6.64 -38.60 -0.26 4.25 16 14 O -0.15 -4.30 8.94 -3.01 -0.03 -4.33 16 15 C -0.40 -11.16 9.49 30.90 0.29 -10.87 16 16 H 0.09 2.38 5.21 -52.48 -0.27 2.10 16 17 C 0.04 1.21 5.49 -17.52 -0.10 1.11 16 18 N -0.84 -25.24 13.67 55.48 0.76 -24.48 16 19 Si 0.94 20.46 29.55 -169.99 -5.02 15.43 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 21 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 23 C 0.11 1.43 5.56 -3.71 -0.02 1.41 16 24 C -0.13 -1.52 5.30 -26.61 -0.14 -1.66 16 25 C -0.07 -0.81 2.15 -91.56 -0.20 -1.01 16 26 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 27 C 0.48 5.70 7.34 36.00 0.26 5.97 16 28 O -0.51 -7.51 14.35 -18.75 -0.27 -7.78 16 29 O -0.52 -4.60 13.30 -39.24 -0.52 -5.12 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.08 1.08 5.44 -51.93 -0.28 0.80 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.10 1.69 7.00 -51.93 -0.36 1.33 16 35 H 0.11 1.57 7.75 -52.49 -0.41 1.16 16 36 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 37 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 38 H 0.13 2.72 5.64 -52.49 -0.30 2.43 16 39 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.10 1.40 5.39 -51.93 -0.28 1.12 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.09 0.83 8.09 -51.93 -0.42 0.41 16 44 H 0.41 1.99 9.10 45.56 0.41 2.41 16 LS Contribution 362.35 15.07 5.46 5.46 Total: -1.00 -36.06 362.35 -7.02 -43.08 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -4.85 Total: 8.30 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -2.06 Total: -6.06 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.24 Total: -35.32 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.79 Total: -30.90 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.06 -7.02 -43.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589392801.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.163 kcal (2) G-P(sol) polarization free energy of solvation -36.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds