Wall clock time and date at job start Tue Mar 31 2020 17:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.52093 * 2 1 4 4 C 1.53191 * 109.49986 * 120.08183 * 2 1 3 5 5 N 1.46925 * 108.89440 * 174.66115 * 4 2 1 6 6 C 1.34779 * 120.62757 * 126.33941 * 5 4 2 7 7 O 1.21585 * 120.00740 * 354.17526 * 6 5 4 8 8 C 1.47541 * 119.99586 * 174.17224 * 6 5 4 9 9 C 1.39664 * 120.19855 * 306.19018 * 8 6 5 10 10 C 1.37832 * 119.91993 * 179.71917 * 9 8 6 11 11 C 1.38575 * 120.31845 * 0.55703 * 10 9 8 12 12 C 1.38031 * 120.40577 * 359.71588 * 11 10 9 13 13 C 1.38830 * 120.06759 * 0.02562 * 12 11 10 14 14 O 1.35526 * 120.16046 * 180.02562 * 13 12 11 15 15 C 1.34810 * 116.99867 * 5.42977 * 14 13 12 16 16 H 1.08008 * 120.00131 * 354.95337 * 15 14 13 17 17 C 1.38699 * 120.00144 * 174.95464 * 15 14 13 18 18 N 1.31516 * 119.99719 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00053 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47418 * 90.00047 * 19 17 15 21 21 H 1.48499 * 109.47099 * 210.00161 * 19 17 15 22 22 H 1.48503 * 109.47239 * 329.99986 * 19 17 15 23 23 C 1.46923 * 118.73837 * 306.31689 * 5 4 2 24 24 C 1.53194 * 108.77489 * 53.61370 * 23 5 4 25 25 C 1.53049 * 109.31043 * 305.36158 * 24 23 5 26 26 H 1.09004 * 109.46069 * 301.36090 * 25 24 23 27 27 C 1.50699 * 109.45972 * 181.38807 * 25 24 23 28 28 O 1.20829 * 119.99570 * 240.00168 * 27 25 24 29 29 O 1.34223 * 120.00143 * 60.00013 * 27 25 24 30 30 H 1.09000 * 109.47433 * 299.91713 * 1 2 3 31 31 H 1.08998 * 109.46909 * 59.92279 * 1 2 3 32 32 H 1.09004 * 109.46651 * 179.91696 * 1 2 3 33 33 H 1.08994 * 109.58842 * 54.79940 * 4 2 1 34 34 H 1.09004 * 109.58493 * 294.51559 * 4 2 1 35 35 H 1.08002 * 120.04179 * 359.97438 * 9 8 6 36 36 H 1.07992 * 119.84201 * 180.27154 * 10 9 8 37 37 H 1.07999 * 119.80084 * 179.74248 * 11 10 9 38 38 H 1.07995 * 119.96295 * 180.02562 * 12 11 10 39 39 H 0.97006 * 119.99977 * 179.97438 * 18 17 15 40 40 H 1.09002 * 109.58815 * 173.39550 * 23 5 4 41 41 H 1.08996 * 109.58575 * 293.82223 * 23 5 4 42 42 H 1.08996 * 109.50050 * 65.30923 * 24 23 5 43 43 H 1.08997 * 109.49506 * 185.38407 * 24 23 5 44 44 H 0.96697 * 117.00367 * 179.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0414 -0.7238 1.2495 5 7 3.5049 -0.8290 1.1730 6 6 4.2789 -0.3850 2.1831 7 8 3.7763 0.2030 3.1212 8 6 5.7363 -0.6128 2.1506 9 6 6.2420 -1.9027 1.9750 10 6 7.6045 -2.1081 1.9397 11 6 8.4768 -1.0418 2.0892 12 6 7.9915 0.2378 2.2693 13 6 6.6222 0.4642 2.3021 14 8 6.1437 1.7199 2.4782 15 6 7.0463 2.7209 2.5028 16 1 8.1023 2.4970 2.4669 17 6 6.6189 4.0385 2.5742 18 7 5.3331 4.3112 2.6184 19 14 7.8696 5.4256 2.6075 20 1 8.1666 5.8578 1.2182 21 1 7.3181 6.5710 3.3750 22 1 9.1184 4.9507 3.2558 23 6 4.1084 -1.4276 -0.0253 24 6 3.5768 -0.6972 -1.2625 25 6 2.0466 -0.7255 -1.2484 26 1 1.7026 -1.7598 -1.2348 27 6 1.5203 -0.0375 -2.4815 28 8 0.8087 0.9331 -2.3745 29 8 1.8422 -0.5029 -3.6987 30 1 -0.3634 0.5125 0.8907 31 1 -0.3633 0.5150 -0.8893 32 1 -0.3633 -1.0277 -0.0015 33 1 1.6054 -1.7216 1.2980 34 1 1.7616 -0.1592 2.1390 35 1 5.5663 -2.7378 1.8628 36 1 7.9941 -3.1055 1.7994 37 1 9.5428 -1.2129 2.0644 38 1 8.6778 1.0636 2.3847 39 1 5.0341 5.2326 2.6687 40 1 5.1926 -1.3253 0.0216 41 1 3.8409 -2.4828 -0.0808 42 1 3.9215 0.3367 -1.2508 43 1 3.9419 -1.1925 -2.1622 44 1 1.4805 -0.0287 -4.4598 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589392801.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:45 Heat of formation + Delta-G solvation = -151.955135 kcal Electronic energy + Delta-G solvation = -29524.737461 eV Core-core repulsion = 25406.713185 eV Total energy + Delta-G solvation = -4118.024276 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.96430 -41.26406 -40.14349 -38.41782 -38.04136 -37.14031 -34.82273 -34.36213 -33.12973 -32.01564 -30.60740 -28.20347 -27.69484 -27.20144 -24.51421 -23.45814 -23.24868 -23.02888 -21.28010 -20.40494 -19.89963 -19.04578 -18.80685 -18.13168 -17.60228 -17.20110 -16.75169 -16.51504 -16.38053 -15.78486 -15.74783 -15.46832 -15.36245 -15.12868 -14.86508 -14.49546 -14.45660 -14.27205 -13.90854 -13.63794 -13.57066 -13.24530 -13.02856 -12.91985 -12.88090 -12.67481 -12.54315 -12.36865 -12.32547 -12.15035 -12.02629 -11.88012 -11.57131 -11.46400 -11.26334 -10.86246 -10.72081 -9.78348 -9.61532 -9.04676 -8.49943 -6.20309 0.26942 0.72096 1.17585 1.29855 1.41108 1.49036 1.73517 2.03680 2.13075 2.18823 2.81196 3.14843 3.37406 3.42994 3.60381 3.73975 3.87601 3.92548 4.13865 4.21516 4.27466 4.32138 4.37544 4.50708 4.56352 4.60569 4.63212 4.67423 4.69192 4.79501 4.86569 4.97151 5.06531 5.07027 5.09081 5.16268 5.24957 5.26357 5.52280 5.58729 5.65365 5.71097 5.72163 5.93436 6.18236 6.40812 6.91905 7.00143 7.27700 7.74996 8.72099 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.010249 B = 0.004250 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.419292 B = 6586.602967 C = 7889.677716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.087 4.087 3 H 0.031 0.969 4 C 0.120 3.880 5 N -0.611 5.611 6 C 0.567 3.433 7 O -0.587 6.587 8 C -0.229 4.229 9 C -0.032 4.032 10 C -0.189 4.189 11 C -0.046 4.046 12 C -0.250 4.250 13 C 0.143 3.857 14 O -0.216 6.216 15 C -0.418 4.418 16 H 0.108 0.892 17 C -0.025 4.025 18 N -0.917 5.917 19 Si 1.022 2.978 20 H -0.260 1.260 21 H -0.275 1.275 22 H -0.247 1.247 23 C 0.106 3.894 24 C -0.123 4.123 25 C -0.067 4.067 26 H 0.155 0.845 27 C 0.487 3.513 28 O -0.546 6.546 29 O -0.505 6.505 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.058 0.942 35 H 0.158 0.842 36 H 0.166 0.834 37 H 0.154 0.846 38 H 0.122 0.878 39 H 0.270 0.730 40 H 0.090 0.910 41 H 0.123 0.877 42 H 0.033 0.967 43 H 0.125 0.875 44 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.612 -18.368 -12.696 22.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.107 4.107 3 H 0.049 0.951 4 C -0.002 4.002 5 N -0.344 5.344 6 C 0.358 3.642 7 O -0.467 6.467 8 C -0.233 4.233 9 C -0.051 4.051 10 C -0.207 4.207 11 C -0.064 4.064 12 C -0.270 4.270 13 C 0.090 3.910 14 O -0.121 6.121 15 C -0.494 4.494 16 H 0.126 0.874 17 C -0.223 4.223 18 N -0.554 5.554 19 Si 0.840 3.160 20 H -0.185 1.185 21 H -0.200 1.200 22 H -0.170 1.170 23 C -0.015 4.015 24 C -0.161 4.161 25 C -0.085 4.085 26 H 0.172 0.828 27 C 0.331 3.669 28 O -0.437 6.437 29 O -0.318 6.318 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.131 0.869 34 H 0.077 0.923 35 H 0.176 0.824 36 H 0.184 0.816 37 H 0.171 0.829 38 H 0.139 0.861 39 H 0.079 0.921 40 H 0.108 0.892 41 H 0.140 0.860 42 H 0.052 0.948 43 H 0.143 0.857 44 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -2.282 -17.743 -11.807 21.434 hybrid contribution -0.081 2.211 -0.048 2.213 sum -2.364 -15.532 -11.855 19.682 Atomic orbital electron populations 1.21968 0.92393 1.03591 1.02887 1.21336 0.97747 0.98070 0.93528 0.95055 1.21694 0.79036 1.02058 0.97416 1.48103 1.06603 1.61310 1.18371 1.18619 0.87268 0.76447 0.81894 1.90738 1.75902 1.42302 1.37751 1.19109 0.90996 0.94535 1.18696 1.21208 0.96930 0.92761 0.94169 1.21179 0.91949 1.00178 1.07374 1.21408 1.01303 0.90636 0.93097 1.21274 0.93392 0.99900 1.12404 1.19964 0.93384 0.85620 0.92070 1.84011 1.36983 1.12414 1.78663 1.21949 0.89520 0.84640 1.53297 0.87436 1.26742 0.99359 1.00518 0.95671 1.70271 1.16476 1.20747 1.47894 0.84557 0.76782 0.75362 0.79279 1.18522 1.19989 1.16976 1.22127 0.99463 0.98562 0.81397 1.21940 0.92343 1.01143 1.00685 1.21181 0.97033 1.02637 0.87685 0.82753 1.23612 0.76263 0.81374 0.85617 1.90680 1.37316 1.28094 1.87588 1.84475 1.71202 1.59469 1.16646 0.93242 0.91141 0.89534 0.86881 0.92314 0.82423 0.81603 0.82879 0.86067 0.92080 0.89165 0.85959 0.94828 0.85697 0.71221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 8.87 71.98 0.64 -2.99 16 2 C -0.09 -2.45 2.07 -10.61 -0.02 -2.47 16 3 H 0.03 1.21 8.13 -2.39 -0.02 1.20 16 4 C 0.12 3.54 5.72 86.36 0.49 4.03 16 5 N -0.61 -20.32 2.97 -822.67 -2.45 -22.77 16 6 C 0.57 25.98 6.83 86.70 0.59 26.57 16 7 O -0.59 -34.00 16.15 -0.35 -0.01 -34.01 16 8 C -0.23 -9.76 4.62 -19.98 -0.09 -9.85 16 9 C -0.03 -0.95 7.77 22.52 0.18 -0.77 16 10 C -0.19 -4.72 10.03 22.25 0.22 -4.49 16 11 C -0.05 -1.38 10.03 22.30 0.22 -1.16 16 12 C -0.25 -10.47 9.16 22.36 0.20 -10.27 16 13 C 0.14 7.25 6.64 22.91 0.15 7.40 16 14 O -0.22 -13.73 8.94 -16.44 -0.15 -13.88 16 15 C -0.42 -25.26 9.49 67.93 0.64 -24.62 16 16 H 0.11 5.81 5.21 -2.91 -0.02 5.80 16 17 C -0.02 -1.49 5.49 84.85 0.47 -1.02 16 18 N -0.92 -60.50 13.67 21.62 0.30 -60.20 16 19 Si 1.02 44.61 29.55 68.60 2.03 46.64 16 20 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 22 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 23 C 0.11 2.36 5.56 86.36 0.48 2.84 16 24 C -0.12 -2.66 5.30 30.68 0.16 -2.49 16 25 C -0.07 -1.35 2.15 -11.41 -0.02 -1.37 16 26 H 0.16 1.81 8.14 -2.39 -0.02 1.79 16 27 C 0.49 10.79 7.34 71.24 0.52 11.31 16 28 O -0.55 -16.47 14.35 21.95 0.32 -16.16 16 29 O -0.50 -7.40 13.30 -51.35 -0.68 -8.08 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.90 5.44 -2.39 -0.01 1.89 16 32 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.06 2.22 7.00 -2.38 -0.02 2.20 16 35 H 0.16 3.28 7.75 -2.91 -0.02 3.26 16 36 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 37 H 0.15 3.31 8.06 -2.91 -0.02 3.28 16 38 H 0.12 5.18 5.64 -2.91 -0.02 5.17 16 39 H 0.27 16.42 8.31 -92.70 -0.77 15.65 16 40 H 0.09 2.24 5.39 -2.39 -0.01 2.23 16 41 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.12 1.82 8.09 -2.39 -0.02 1.80 16 44 H 0.43 3.02 9.10 -74.06 -0.67 2.35 16 Total: -1.00 -95.90 362.35 4.57 -91.33 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.38 Total: 26.49 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: 4.84 Total: -9.36 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -2.15 Total: -82.97 kcal Atomic # 8 Polarization: -71.61 SS G_CDS: -0.52 Total: -72.13 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -95.90 4.57 -91.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589392801.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.625 kcal (2) G-P(sol) polarization free energy of solvation -95.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds