Wall clock time and date at job start Tue Mar 31 2020 17:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.49672 * 2 1 4 4 C 1.53190 * 109.50286 * 239.89612 * 2 1 3 5 5 N 1.46921 * 108.77708 * 185.41200 * 4 2 1 6 6 C 1.34777 * 120.63222 * 233.58875 * 5 4 2 7 7 O 1.21594 * 120.00009 * 174.19751 * 6 5 4 8 8 C 1.47538 * 119.99993 * 354.20206 * 6 5 4 9 9 C 1.39668 * 120.19243 * 306.18304 * 8 6 5 10 10 C 1.37829 * 119.91468 * 180.02562 * 9 8 6 11 11 C 1.38570 * 120.32638 * 0.02562 * 10 9 8 12 12 C 1.38028 * 120.40137 * 0.02680 * 11 10 9 13 13 C 1.38834 * 120.06936 * 359.66985 * 12 11 10 14 14 O 1.35522 * 120.16126 * 180.29861 * 13 12 11 15 15 C 1.34816 * 116.99771 * 5.43841 * 14 13 12 16 16 H 1.07997 * 119.99907 * 354.94431 * 15 14 13 17 17 C 1.38697 * 119.99894 * 174.95333 * 15 14 13 18 18 N 1.31519 * 120.00019 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 119.99960 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.46991 * 90.00162 * 19 17 15 21 21 H 1.48497 * 109.46889 * 210.00314 * 19 17 15 22 22 H 1.48502 * 109.46790 * 330.00119 * 19 17 15 23 23 C 1.46928 * 118.73601 * 53.61312 * 5 4 2 24 24 C 1.53188 * 108.77514 * 306.38697 * 23 5 4 25 25 C 1.53039 * 109.31482 * 54.63777 * 24 23 5 26 26 H 1.09005 * 109.44935 * 58.64393 * 25 24 23 27 27 C 1.50692 * 109.46272 * 178.61224 * 25 24 23 28 28 O 1.20828 * 120.00036 * 120.06796 * 27 25 24 29 29 O 1.34226 * 120.00111 * 300.06860 * 27 25 24 30 30 H 1.08994 * 109.47500 * 299.94190 * 1 2 3 31 31 H 1.09003 * 109.46922 * 59.94343 * 1 2 3 32 32 H 1.09000 * 109.47052 * 179.97438 * 1 2 3 33 33 H 1.08990 * 109.58724 * 305.20547 * 4 2 1 34 34 H 1.09005 * 109.58262 * 65.62787 * 4 2 1 35 35 H 1.07997 * 120.04393 * 0.03352 * 9 8 6 36 36 H 1.07999 * 119.83196 * 179.97438 * 10 9 8 37 37 H 1.07998 * 119.80040 * 179.97438 * 11 10 9 38 38 H 1.07997 * 119.96343 * 179.97438 * 12 11 10 39 39 H 0.96996 * 120.00136 * 179.97438 * 18 17 15 40 40 H 1.09006 * 109.58586 * 186.60080 * 23 5 4 41 41 H 1.08997 * 109.58580 * 66.17877 * 23 5 4 42 42 H 1.08999 * 109.50219 * 294.68792 * 24 23 5 43 43 H 1.08997 * 109.52573 * 174.60617 * 24 23 5 44 44 H 0.96707 * 117.00460 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7243 -1.2492 5 7 3.5046 -0.8295 -1.1691 6 6 4.2812 -0.3871 -2.1779 7 8 5.4911 -0.3822 -2.0567 8 6 3.6633 0.0914 -3.4293 9 6 2.7627 -0.7201 -4.1230 10 6 2.1892 -0.2676 -5.2918 11 6 2.5019 0.9896 -5.7836 12 6 3.3910 1.8021 -5.1094 13 6 3.9735 1.3654 -3.9273 14 8 4.8421 2.1641 -3.2606 15 6 5.0129 3.4139 -3.7363 16 1 4.5327 3.7117 -4.6566 17 6 5.8054 4.3172 -3.0437 18 7 5.9724 5.5364 -3.5079 19 14 6.6355 3.8022 -1.4514 20 1 7.9755 3.2372 -1.7521 21 1 6.7843 4.9849 -0.5658 22 1 5.8065 2.7752 -0.7707 23 6 4.1052 -1.4266 0.0315 24 6 3.5708 -0.6945 1.2664 25 6 2.0407 -0.7226 1.2487 26 1 1.6968 -1.7569 1.2359 27 6 1.5117 -0.0329 2.4796 28 8 0.7994 0.9369 2.3697 29 8 1.8317 -0.4958 3.6982 30 1 -0.3634 0.5129 0.8904 31 1 -0.3633 0.5147 -0.8895 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6054 -1.7220 -1.2974 34 1 1.7639 -0.1587 -2.1388 35 1 2.5159 -1.7008 -3.7441 36 1 1.4933 -0.8964 -5.8273 37 1 2.0478 1.3355 -6.7004 38 1 3.6299 2.7805 -5.4993 39 1 6.5263 6.1682 -3.0234 40 1 5.1896 -1.3245 -0.0130 41 1 3.8375 -2.4817 0.0878 42 1 3.9157 0.3394 1.2541 43 1 3.9333 -1.1883 2.1679 44 1 1.4681 -0.0205 4.4579 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589392803.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:49 Heat of formation + Delta-G solvation = -124.383505 kcal Electronic energy + Delta-G solvation = -29770.279198 eV Core-core repulsion = 25653.450518 eV Total energy + Delta-G solvation = -4116.828680 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.00531 -40.00674 -38.79638 -37.25511 -36.58885 -36.27571 -33.39461 -32.61237 -32.48312 -30.48462 -29.28051 -27.33517 -26.20693 -25.36769 -23.64594 -22.40326 -22.04112 -21.30734 -20.29610 -19.23271 -18.23701 -17.99403 -17.47426 -17.09859 -16.43574 -16.05417 -15.64176 -15.12823 -14.84631 -14.58590 -14.32323 -14.06186 -14.00605 -13.84856 -13.78328 -13.40783 -13.13230 -12.76336 -12.65086 -12.40042 -12.26304 -12.17710 -12.06418 -12.01058 -11.54801 -11.41344 -11.24682 -11.11549 -10.90903 -10.85214 -10.81997 -10.66592 -10.29766 -10.24668 -9.66490 -9.23870 -8.94328 -8.48338 -8.34982 -7.52987 -6.50409 -4.16550 1.66715 1.99974 2.13713 2.80223 3.10173 3.23315 3.29349 3.35964 3.46511 4.23275 4.30949 4.35124 4.47221 4.67131 4.71860 4.83489 5.02454 5.02955 5.13037 5.17249 5.25880 5.39775 5.41008 5.44471 5.55254 5.59916 5.63985 5.72796 5.80648 5.92351 5.95206 5.96306 6.05220 6.12189 6.21933 6.34010 6.45139 6.50610 6.71689 6.84559 6.97180 7.12789 7.44358 7.60530 7.69847 7.71703 7.91797 8.63831 8.84402 9.44927 10.55692 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.010093 B = 0.004897 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.491105 B = 5716.053797 C = 7064.307955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.094 4.094 3 H 0.087 0.913 4 C 0.115 3.885 5 N -0.619 5.619 6 C 0.581 3.419 7 O -0.527 6.527 8 C -0.217 4.217 9 C -0.044 4.044 10 C -0.214 4.214 11 C -0.055 4.055 12 C -0.222 4.222 13 C 0.197 3.803 14 O -0.191 6.191 15 C -0.393 4.393 16 H 0.110 0.890 17 C 0.071 3.929 18 N -0.870 5.870 19 Si 0.903 3.097 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.257 1.257 23 C 0.116 3.884 24 C -0.128 4.128 25 C -0.073 4.073 26 H 0.110 0.890 27 C 0.482 3.518 28 O -0.505 6.505 29 O -0.517 6.517 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.102 0.898 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.139 0.861 39 H 0.282 0.718 40 H 0.098 0.902 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.274 -14.841 8.845 20.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.113 4.113 3 H 0.106 0.894 4 C -0.008 4.008 5 N -0.354 5.354 6 C 0.371 3.629 7 O -0.403 6.403 8 C -0.222 4.222 9 C -0.063 4.063 10 C -0.233 4.233 11 C -0.074 4.074 12 C -0.241 4.241 13 C 0.141 3.859 14 O -0.093 6.093 15 C -0.468 4.468 16 H 0.127 0.873 17 C -0.134 4.134 18 N -0.506 5.506 19 Si 0.729 3.271 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.181 1.181 23 C -0.007 4.007 24 C -0.167 4.167 25 C -0.092 4.092 26 H 0.128 0.872 27 C 0.325 3.675 28 O -0.393 6.393 29 O -0.329 6.329 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.120 0.880 35 H 0.135 0.865 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.156 0.844 39 H 0.092 0.908 40 H 0.117 0.883 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.106 0.894 44 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -10.350 -14.559 8.771 19.900 hybrid contribution 0.038 0.420 1.063 1.144 sum -10.311 -14.139 9.834 20.073 Atomic orbital electron populations 1.22053 0.93606 1.01816 1.04194 1.21458 0.96862 1.00790 0.92185 0.89435 1.21868 0.79618 1.00513 0.98771 1.48041 1.06642 1.62636 1.18098 1.18262 0.86194 0.75524 0.82885 1.90752 1.14234 1.53660 1.81607 1.18711 1.07877 0.96267 0.99299 1.20703 0.93448 0.97521 0.94640 1.20554 1.06048 0.97659 0.99014 1.20958 0.95090 0.93418 0.97930 1.21265 1.02865 1.02678 0.97270 1.18940 0.87416 0.89210 0.90321 1.83615 1.51353 1.24129 1.50198 1.20836 1.32131 0.84026 1.09818 0.87288 1.24455 0.96081 0.93870 0.98998 1.69621 1.37312 1.03980 1.39693 0.86186 0.80723 0.78235 0.81999 1.19549 1.20855 1.18111 1.21489 1.00386 0.95824 0.82999 1.21960 0.92013 1.03204 0.99476 1.21140 0.97553 1.01028 0.89449 0.87203 1.23557 0.77167 0.82159 0.84642 1.90673 1.35276 1.26432 1.86915 1.84540 1.71646 1.59805 1.16947 0.89942 0.91881 0.93034 0.91432 0.87957 0.86523 0.86875 0.86784 0.84389 0.90813 0.88345 0.91361 0.90590 0.89376 0.73346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 8.86 37.16 0.33 -1.35 16 2 C -0.09 -1.13 2.06 -90.50 -0.19 -1.31 16 3 H 0.09 1.34 8.13 -51.93 -0.42 0.92 16 4 C 0.12 1.42 4.85 -3.71 -0.02 1.40 16 5 N -0.62 -9.48 2.97 -174.00 -0.52 -10.00 16 6 C 0.58 11.72 6.83 -12.47 -0.09 11.64 16 7 O -0.53 -12.70 16.18 2.09 0.03 -12.67 16 8 C -0.22 -4.33 4.62 -104.81 -0.48 -4.81 16 9 C -0.04 -0.70 7.77 -39.20 -0.30 -1.01 16 10 C -0.21 -3.21 10.02 -39.61 -0.40 -3.61 16 11 C -0.06 -0.92 10.03 -39.54 -0.40 -1.32 16 12 C -0.22 -4.59 9.16 -39.44 -0.36 -4.95 16 13 C 0.20 4.56 6.65 -38.60 -0.26 4.31 16 14 O -0.19 -5.18 7.79 -2.40 -0.02 -5.20 16 15 C -0.39 -11.12 9.95 30.90 0.31 -10.81 16 16 H 0.11 3.08 5.44 -52.49 -0.29 2.79 16 17 C 0.07 2.02 5.49 -17.52 -0.10 1.93 16 18 N -0.87 -25.10 13.96 55.48 0.77 -24.33 16 19 Si 0.90 22.94 28.62 -169.99 -4.86 18.08 16 20 H -0.27 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.26 -6.76 7.11 56.52 0.40 -6.35 16 23 C 0.12 1.46 6.44 -3.71 -0.02 1.43 16 24 C -0.13 -1.44 5.30 -26.61 -0.14 -1.58 16 25 C -0.07 -0.74 2.14 -91.73 -0.20 -0.94 16 26 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 27 C 0.48 5.27 7.33 36.00 0.26 5.54 16 28 O -0.51 -7.00 14.33 -18.75 -0.27 -7.27 16 29 O -0.52 -4.25 13.30 -39.25 -0.52 -4.78 16 30 H 0.08 0.99 5.41 -51.93 -0.28 0.71 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.10 1.39 5.39 -51.93 -0.28 1.11 16 35 H 0.12 1.49 7.75 -52.49 -0.41 1.09 16 36 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 38 H 0.14 2.98 5.64 -52.49 -0.30 2.69 16 39 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.10 1.44 7.00 -51.93 -0.36 1.08 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.09 0.80 8.08 -51.93 -0.42 0.38 16 44 H 0.41 1.75 9.10 45.56 0.41 2.16 16 LS Contribution 361.16 15.07 5.44 5.44 Total: -1.00 -34.62 361.16 -6.84 -41.46 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -4.86 Total: 4.71 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -2.05 Total: -5.46 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: 0.26 Total: -34.33 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -0.78 Total: -29.91 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.86 Total: 18.08 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.62 -6.84 -41.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589392803.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.921 kcal (2) G-P(sol) polarization free energy of solvation -34.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds