Wall clock time and date at job start Tue Mar 31 2020 17:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.49672 * 2 1 4 4 C 1.53190 * 109.50286 * 239.89612 * 2 1 3 5 5 N 1.46921 * 108.77708 * 185.41200 * 4 2 1 6 6 C 1.34777 * 120.63222 * 233.58875 * 5 4 2 7 7 O 1.21594 * 120.00009 * 174.19751 * 6 5 4 8 8 C 1.47538 * 119.99993 * 354.20206 * 6 5 4 9 9 C 1.39668 * 120.19243 * 306.18304 * 8 6 5 10 10 C 1.37829 * 119.91468 * 180.02562 * 9 8 6 11 11 C 1.38570 * 120.32638 * 0.02562 * 10 9 8 12 12 C 1.38028 * 120.40137 * 0.02680 * 11 10 9 13 13 C 1.38834 * 120.06936 * 359.66985 * 12 11 10 14 14 O 1.35522 * 120.16126 * 180.29861 * 13 12 11 15 15 C 1.34816 * 116.99771 * 5.43841 * 14 13 12 16 16 H 1.07997 * 119.99907 * 354.94431 * 15 14 13 17 17 C 1.38697 * 119.99894 * 174.95333 * 15 14 13 18 18 N 1.31519 * 120.00019 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 119.99960 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.46991 * 90.00162 * 19 17 15 21 21 H 1.48497 * 109.46889 * 210.00314 * 19 17 15 22 22 H 1.48502 * 109.46790 * 330.00119 * 19 17 15 23 23 C 1.46928 * 118.73601 * 53.61312 * 5 4 2 24 24 C 1.53188 * 108.77514 * 306.38697 * 23 5 4 25 25 C 1.53039 * 109.31482 * 54.63777 * 24 23 5 26 26 H 1.09005 * 109.44935 * 58.64393 * 25 24 23 27 27 C 1.50692 * 109.46272 * 178.61224 * 25 24 23 28 28 O 1.20828 * 120.00036 * 120.06796 * 27 25 24 29 29 O 1.34226 * 120.00111 * 300.06860 * 27 25 24 30 30 H 1.08994 * 109.47500 * 299.94190 * 1 2 3 31 31 H 1.09003 * 109.46922 * 59.94343 * 1 2 3 32 32 H 1.09000 * 109.47052 * 179.97438 * 1 2 3 33 33 H 1.08990 * 109.58724 * 305.20547 * 4 2 1 34 34 H 1.09005 * 109.58262 * 65.62787 * 4 2 1 35 35 H 1.07997 * 120.04393 * 0.03352 * 9 8 6 36 36 H 1.07999 * 119.83196 * 179.97438 * 10 9 8 37 37 H 1.07998 * 119.80040 * 179.97438 * 11 10 9 38 38 H 1.07997 * 119.96343 * 179.97438 * 12 11 10 39 39 H 0.96996 * 120.00136 * 179.97438 * 18 17 15 40 40 H 1.09006 * 109.58586 * 186.60080 * 23 5 4 41 41 H 1.08997 * 109.58580 * 66.17877 * 23 5 4 42 42 H 1.08999 * 109.50219 * 294.68792 * 24 23 5 43 43 H 1.08997 * 109.52573 * 174.60617 * 24 23 5 44 44 H 0.96707 * 117.00460 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7243 -1.2492 5 7 3.5046 -0.8295 -1.1691 6 6 4.2812 -0.3871 -2.1779 7 8 5.4911 -0.3822 -2.0567 8 6 3.6633 0.0914 -3.4293 9 6 2.7627 -0.7201 -4.1230 10 6 2.1892 -0.2676 -5.2918 11 6 2.5019 0.9896 -5.7836 12 6 3.3910 1.8021 -5.1094 13 6 3.9735 1.3654 -3.9273 14 8 4.8421 2.1641 -3.2606 15 6 5.0129 3.4139 -3.7363 16 1 4.5327 3.7117 -4.6566 17 6 5.8054 4.3172 -3.0437 18 7 5.9724 5.5364 -3.5079 19 14 6.6355 3.8022 -1.4514 20 1 7.9755 3.2372 -1.7521 21 1 6.7843 4.9849 -0.5658 22 1 5.8065 2.7752 -0.7707 23 6 4.1052 -1.4266 0.0315 24 6 3.5708 -0.6945 1.2664 25 6 2.0407 -0.7226 1.2487 26 1 1.6968 -1.7569 1.2359 27 6 1.5117 -0.0329 2.4796 28 8 0.7994 0.9369 2.3697 29 8 1.8317 -0.4958 3.6982 30 1 -0.3634 0.5129 0.8904 31 1 -0.3633 0.5147 -0.8895 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6054 -1.7220 -1.2974 34 1 1.7639 -0.1587 -2.1388 35 1 2.5159 -1.7008 -3.7441 36 1 1.4933 -0.8964 -5.8273 37 1 2.0478 1.3355 -6.7004 38 1 3.6299 2.7805 -5.4993 39 1 6.5263 6.1682 -3.0234 40 1 5.1896 -1.3245 -0.0130 41 1 3.8375 -2.4817 0.0878 42 1 3.9157 0.3394 1.2541 43 1 3.9333 -1.1883 2.1679 44 1 1.4681 -0.0205 4.4579 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589392803.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:48 Heat of formation + Delta-G solvation = -148.942767 kcal Electronic energy + Delta-G solvation = -29771.344168 eV Core-core repulsion = 25653.450518 eV Total energy + Delta-G solvation = -4117.893650 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.01733 -41.34841 -40.25943 -38.49501 -38.18628 -37.14120 -34.60289 -34.54731 -33.62352 -31.86610 -30.84674 -28.31255 -27.40285 -27.19898 -24.92633 -23.45247 -23.22218 -22.75011 -21.35785 -20.51707 -19.88657 -19.09914 -18.97252 -18.22188 -17.73832 -17.22565 -16.88095 -16.53246 -16.41747 -15.80689 -15.65908 -15.55185 -15.49121 -15.30652 -14.86725 -14.58717 -14.45497 -14.27264 -14.11452 -13.95895 -13.56229 -13.24438 -13.13399 -12.97760 -12.95587 -12.81033 -12.57169 -12.41485 -12.39806 -12.18175 -12.02343 -11.83198 -11.62936 -11.53956 -11.24390 -11.01946 -10.80119 -9.84819 -9.66406 -9.16805 -8.61531 -6.30783 0.19168 0.62873 1.15834 1.16252 1.21963 1.38949 1.65240 2.01023 2.14501 2.16971 2.68719 2.96606 3.06278 3.42104 3.49583 3.72444 3.86269 3.90961 4.07218 4.21653 4.23565 4.28487 4.36660 4.49717 4.52304 4.56414 4.62661 4.66849 4.70841 4.78669 4.81621 4.87119 5.03214 5.07566 5.09899 5.28090 5.29456 5.33782 5.48027 5.56311 5.63830 5.69027 5.71513 5.82259 6.14938 6.32368 6.74554 6.98710 7.17713 7.51977 8.49761 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.010093 B = 0.004897 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.491105 B = 5716.053797 C = 7064.307955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 H 0.037 0.963 4 C 0.112 3.888 5 N -0.610 5.610 6 C 0.569 3.431 7 O -0.583 6.583 8 C -0.221 4.221 9 C -0.034 4.034 10 C -0.179 4.179 11 C -0.050 4.050 12 C -0.243 4.243 13 C 0.153 3.847 14 O -0.235 6.235 15 C -0.397 4.397 16 H 0.093 0.907 17 C 0.025 3.975 18 N -0.910 5.910 19 Si 0.955 3.045 20 H -0.273 1.273 21 H -0.259 1.259 22 H -0.282 1.282 23 C 0.111 3.889 24 C -0.121 4.121 25 C -0.068 4.068 26 H 0.154 0.846 27 C 0.486 3.514 28 O -0.542 6.542 29 O -0.508 6.508 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.120 0.880 34 H 0.088 0.912 35 H 0.163 0.837 36 H 0.169 0.831 37 H 0.151 0.849 38 H 0.114 0.886 39 H 0.286 0.714 40 H 0.070 0.930 41 H 0.117 0.883 42 H 0.034 0.966 43 H 0.117 0.883 44 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.519 -19.679 9.179 26.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.112 4.112 3 H 0.056 0.944 4 C -0.009 4.009 5 N -0.343 5.343 6 C 0.360 3.640 7 O -0.463 6.463 8 C -0.225 4.225 9 C -0.052 4.052 10 C -0.197 4.197 11 C -0.068 4.068 12 C -0.262 4.262 13 C 0.102 3.898 14 O -0.141 6.141 15 C -0.473 4.473 16 H 0.111 0.889 17 C -0.175 4.175 18 N -0.551 5.551 19 Si 0.780 3.220 20 H -0.198 1.198 21 H -0.184 1.184 22 H -0.207 1.207 23 C -0.011 4.011 24 C -0.160 4.160 25 C -0.087 4.087 26 H 0.172 0.828 27 C 0.330 3.670 28 O -0.433 6.433 29 O -0.321 6.321 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.138 0.862 34 H 0.106 0.894 35 H 0.181 0.819 36 H 0.186 0.814 37 H 0.168 0.832 38 H 0.132 0.868 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.135 0.865 42 H 0.053 0.947 43 H 0.135 0.865 44 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -13.663 -19.444 9.137 25.460 hybrid contribution 0.744 1.583 0.878 1.957 sum -12.918 -17.862 10.016 24.212 Atomic orbital electron populations 1.21973 0.91999 1.03699 1.03201 1.21367 0.98074 0.98364 0.93404 0.94443 1.22144 0.77541 1.03068 0.98157 1.48132 1.07844 1.60814 1.17498 1.18485 0.85875 0.75547 0.84134 1.90719 1.16573 1.56241 1.82750 1.19137 1.08162 0.95336 0.99876 1.21256 0.91298 0.98459 0.94186 1.21232 1.04183 0.96644 0.97605 1.21415 0.93223 0.93578 0.98542 1.21306 1.04669 1.02823 0.97410 1.19631 0.88332 0.90377 0.91477 1.83584 1.54798 1.23856 1.51886 1.20803 1.31930 0.85237 1.09359 0.88924 1.25005 0.97095 0.94134 1.01279 1.69668 1.39501 1.04714 1.41191 0.85451 0.79129 0.77759 0.79709 1.19822 1.18378 1.20705 1.21759 0.98902 0.98312 0.82126 1.21891 0.92998 1.00924 1.00137 1.21151 0.96316 1.02902 0.88302 0.82842 1.23638 0.76375 0.81453 0.85544 1.90681 1.37140 1.27963 1.87508 1.84486 1.71228 1.59621 1.16812 0.91601 0.92318 0.89552 0.86166 0.89415 0.81944 0.81386 0.83156 0.86817 0.90416 0.91184 0.86481 0.94719 0.86472 0.71240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 8.86 71.98 0.64 -2.15 16 2 C -0.09 -2.07 2.06 -10.72 -0.02 -2.10 16 3 H 0.04 1.20 8.13 -2.39 -0.02 1.18 16 4 C 0.11 2.37 4.85 86.36 0.42 2.79 16 5 N -0.61 -17.72 2.97 -822.67 -2.45 -20.17 16 6 C 0.57 23.19 6.83 86.70 0.59 23.78 16 7 O -0.58 -29.46 16.18 -0.97 -0.02 -29.47 16 8 C -0.22 -8.71 4.62 -19.99 -0.09 -8.81 16 9 C -0.03 -0.92 7.77 22.52 0.18 -0.74 16 10 C -0.18 -4.32 10.02 22.25 0.22 -4.10 16 11 C -0.05 -1.50 10.03 22.30 0.22 -1.28 16 12 C -0.24 -10.34 9.16 22.36 0.20 -10.13 16 13 C 0.15 7.43 6.65 22.91 0.15 7.58 16 14 O -0.24 -13.79 7.79 -17.06 -0.13 -13.92 16 15 C -0.40 -24.38 9.95 67.93 0.68 -23.70 16 16 H 0.09 5.76 5.44 -2.91 -0.02 5.74 16 17 C 0.02 1.52 5.49 84.85 0.47 1.98 16 18 N -0.91 -55.89 13.96 21.62 0.30 -55.59 16 19 Si 0.95 50.84 28.62 68.60 1.96 52.80 16 20 H -0.27 -14.39 7.11 99.48 0.71 -13.68 16 21 H -0.26 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.28 -15.88 7.11 99.48 0.71 -15.17 16 23 C 0.11 2.56 6.44 86.36 0.56 3.12 16 24 C -0.12 -2.52 5.30 30.67 0.16 -2.36 16 25 C -0.07 -1.19 2.14 -11.51 -0.02 -1.22 16 26 H 0.15 1.44 8.14 -2.38 -0.02 1.42 16 27 C 0.49 9.68 7.33 71.23 0.52 10.20 16 28 O -0.54 -14.80 14.33 21.96 0.31 -14.48 16 29 O -0.51 -6.89 13.30 -51.37 -0.68 -7.57 16 30 H 0.07 1.49 5.41 -2.39 -0.01 1.48 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.09 0.99 8.14 -2.39 -0.02 0.98 16 33 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.09 2.13 5.39 -2.38 -0.01 2.12 16 35 H 0.16 2.99 7.75 -2.91 -0.02 2.97 16 36 H 0.17 2.48 8.06 -2.91 -0.02 2.45 16 37 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 38 H 0.11 5.32 5.64 -2.91 -0.02 5.31 16 39 H 0.29 16.16 8.31 -92.71 -0.77 15.39 16 40 H 0.07 2.07 7.00 -2.38 -0.02 2.05 16 41 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.12 1.77 8.08 -2.39 -0.02 1.75 16 44 H 0.43 2.58 9.10 -74.05 -0.67 1.91 16 Total: -1.00 -87.52 361.16 4.55 -82.97 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.38 Total: 12.56 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 4.87 Total: -7.12 kcal Atomic # 7 Polarization: -73.61 SS G_CDS: -2.14 Total: -75.76 kcal Atomic # 8 Polarization: -64.94 SS G_CDS: -0.52 Total: -65.45 kcal Atomic # 14 Polarization: 50.84 SS G_CDS: 1.96 Total: 52.80 kcal Total: -87.52 4.55 -82.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589392803.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.973 kcal (2) G-P(sol) polarization free energy of solvation -87.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds