Wall clock time and date at job start Tue Mar 31 2020 18:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46834 * 2 1 4 4 C 1.50697 * 109.47267 * 239.99868 * 2 1 3 5 5 O 1.20827 * 119.99905 * 260.00150 * 4 2 1 6 6 O 1.34234 * 120.00025 * 79.99502 * 4 2 1 7 7 N 1.46496 * 109.47135 * 119.99559 * 2 1 3 8 8 C 1.34771 * 120.00493 * 228.73788 * 7 2 1 9 9 O 1.21597 * 120.00095 * 59.32290 * 8 7 2 10 10 C 1.47534 * 120.00184 * 239.33476 * 8 7 2 11 11 C 1.39666 * 120.19505 * 327.49974 * 10 8 7 12 12 C 1.37826 * 119.92257 * 180.02562 * 11 10 8 13 13 C 1.38574 * 120.32024 * 359.97438 * 12 11 10 14 14 C 1.38023 * 120.40308 * 0.03305 * 13 12 11 15 15 C 1.38834 * 120.07142 * 359.67377 * 14 13 12 16 16 O 1.35521 * 120.16441 * 180.30215 * 15 14 13 17 17 C 1.34818 * 116.99764 * 357.15745 * 16 15 14 18 18 H 1.08006 * 119.99861 * 353.76958 * 17 16 15 19 19 C 1.38691 * 119.99970 * 173.77007 * 17 16 15 20 20 N 1.31517 * 120.00394 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00033 * 359.97438 * 19 17 16 22 22 H 1.48495 * 109.47042 * 90.00145 * 21 19 17 23 23 H 1.48498 * 109.47169 * 209.99925 * 21 19 17 24 24 H 1.48504 * 109.47129 * 329.99929 * 21 19 17 25 25 C 1.46506 * 119.99656 * 48.73901 * 7 2 1 26 26 C 1.53778 * 113.61566 * 80.30637 * 25 7 2 27 27 C 1.53781 * 87.08121 * 139.97884 * 26 25 7 28 28 C 1.53780 * 113.61039 * 177.80383 * 25 7 2 29 29 H 1.08992 * 109.47501 * 300.00097 * 1 2 3 30 30 H 1.08998 * 109.47124 * 60.00767 * 1 2 3 31 31 H 1.09007 * 109.47088 * 179.97438 * 1 2 3 32 32 H 0.96695 * 116.99720 * 179.97438 * 6 4 2 33 33 H 1.08005 * 120.04060 * 359.97438 * 11 10 8 34 34 H 1.07997 * 119.84208 * 179.97438 * 12 11 10 35 35 H 1.08005 * 119.79740 * 180.02562 * 13 12 11 36 36 H 1.08000 * 119.96353 * 179.97438 * 14 13 12 37 37 H 0.97001 * 120.00510 * 179.97438 * 20 19 17 38 38 H 1.09004 * 112.90685 * 309.04521 * 25 7 2 39 39 H 1.09001 * 113.60916 * 254.52454 * 26 25 7 40 40 H 1.08993 * 113.61365 * 25.43053 * 26 25 7 41 41 H 1.08999 * 113.61731 * 89.11556 * 27 26 25 42 42 H 1.09000 * 113.61100 * 220.01379 * 27 26 25 43 43 H 1.06290 * 80.88874 * 297.53902 * 33 11 10 44 44 H 1.09003 * 113.62128 * 105.38309 * 28 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.4051 -1.8574 -1.1559 6 8 2.0657 -0.0691 -2.4091 7 7 2.0184 -0.6905 1.1962 8 6 2.9687 -0.1201 1.9629 9 8 2.7675 0.9648 2.4738 10 6 4.2532 -0.8118 2.1821 11 6 4.3008 -2.2069 2.2286 12 6 5.5038 -2.8473 2.4342 13 6 6.6684 -2.1137 2.5948 14 6 6.6367 -0.7345 2.5513 15 6 5.4349 -0.0726 2.3391 16 8 5.4027 1.2813 2.2900 17 6 6.5634 1.9297 2.5135 18 1 7.4402 1.3777 2.8186 19 6 6.6315 3.3054 2.3515 20 7 7.7637 3.9381 2.5700 21 14 5.1152 4.2600 1.8230 22 1 4.3563 4.6886 3.0252 23 1 5.5291 5.4561 1.0464 24 1 4.2550 3.3939 0.9772 25 6 1.4736 -2.0012 1.5590 26 6 2.0866 -3.1651 0.7625 27 6 2.0746 -3.9662 2.0750 28 6 2.1270 -2.6154 2.8082 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.3963 -0.5659 -3.1700 33 1 3.3958 -2.7832 2.1044 34 1 5.5390 -3.9261 2.4704 35 1 7.6066 -2.6243 2.7550 36 1 7.5486 -0.1698 2.6777 37 1 7.8114 4.9002 2.4564 38 1 0.3839 -2.0155 1.5845 39 1 1.4223 -3.5689 -0.0016 40 1 3.0885 -2.9572 0.3870 41 1 1.1494 -4.5178 2.2415 42 1 2.9651 -4.5775 2.2216 43 1 3.1401 -2.2574 2.9921 44 1 1.4961 -2.5743 3.6961 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589477494.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:34 Heat of formation + Delta-G solvation = 40.563959 kcal Electronic energy + Delta-G solvation = -30849.173090 eV Core-core repulsion = 26739.497068 eV Total energy + Delta-G solvation = -4109.676021 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.00644 -40.07682 -38.90007 -38.11205 -36.50905 -36.01549 -34.90992 -32.50028 -31.39918 -30.31645 -29.20793 -25.90752 -25.78782 -25.21316 -24.53177 -23.36215 -22.09162 -21.12735 -20.14098 -18.80051 -18.36750 -17.76112 -17.48552 -16.82358 -16.37498 -16.03401 -15.76382 -15.33619 -15.21244 -14.80299 -14.23309 -14.02112 -13.89795 -13.64998 -13.40844 -13.15228 -13.05056 -12.65677 -12.51811 -12.36460 -12.30333 -12.00746 -11.82266 -11.62769 -11.46742 -11.32247 -11.19980 -11.03391 -10.89451 -10.75190 -10.52694 -10.25904 -10.01482 -9.73508 -9.40724 -9.15297 -8.92130 -8.29135 -8.02260 -7.47628 -6.51352 -4.16826 1.47546 2.13767 2.20380 2.64827 3.11259 3.23657 3.30451 3.36150 3.46816 4.23391 4.29563 4.47288 4.54142 4.65991 4.77355 4.85220 4.94434 4.98909 5.02878 5.15069 5.24098 5.41466 5.49077 5.55474 5.63512 5.71298 5.72808 5.85069 5.89740 5.91790 5.99242 6.10893 6.13780 6.25076 6.41763 6.52033 6.59187 6.65285 6.86411 6.97730 7.01294 7.16582 7.47516 7.59536 7.70099 7.91420 7.94876 8.36899 8.83369 9.44628 10.54502 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011555 B = 0.005687 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.516266 B = 4922.584216 C = 6252.432335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.173 3.827 3 H 0.118 0.882 4 C 0.459 3.541 5 O -0.493 6.493 6 O -0.518 6.518 7 N -0.655 5.655 8 C 0.603 3.397 9 O -0.471 6.471 10 C -0.241 4.241 11 C -0.134 4.134 12 C -0.221 4.221 13 C -0.050 4.050 14 C -0.229 4.229 15 C 0.200 3.800 16 O -0.183 6.183 17 C -0.393 4.393 18 H 0.109 0.891 19 C 0.070 3.930 20 N -0.869 5.869 21 Si 0.907 3.093 22 H -0.270 1.270 23 H -0.283 1.283 24 H -0.257 1.257 25 C 0.136 3.864 26 C -0.138 4.138 27 C -0.157 4.157 28 C -0.263 4.263 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.406 0.594 33 H 0.229 0.771 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.138 0.862 37 H 0.282 0.718 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.113 0.887 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.193 0.807 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.019 -13.379 -6.132 19.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.066 3.934 3 H 0.136 0.864 4 C 0.299 3.701 5 O -0.380 6.380 6 O -0.330 6.330 7 N -0.394 5.394 8 C 0.396 3.604 9 O -0.341 6.341 10 C -0.246 4.246 11 C -0.149 4.149 12 C -0.240 4.240 13 C -0.069 4.069 14 C -0.248 4.248 15 C 0.143 3.857 16 O -0.085 6.085 17 C -0.468 4.468 18 H 0.127 0.873 19 C -0.135 4.135 20 N -0.505 5.505 21 Si 0.732 3.268 22 H -0.195 1.195 23 H -0.209 1.209 24 H -0.181 1.181 25 C 0.033 3.967 26 C -0.176 4.176 27 C -0.195 4.195 28 C -0.298 4.298 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.265 0.735 33 H 0.244 0.756 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.156 0.844 37 H 0.092 0.908 38 H 0.115 0.885 39 H 0.086 0.914 40 H 0.131 0.869 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.208 0.792 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.206 -12.393 -5.477 18.920 hybrid contribution -0.018 0.106 -0.693 0.701 sum -13.224 -12.287 -6.170 19.076 Atomic orbital electron populations 1.22050 0.91788 1.03222 1.04075 1.20107 0.95881 0.96703 0.80709 0.86376 1.24465 0.74868 0.85987 0.84782 1.90740 1.43752 1.18264 1.85203 1.84557 1.79131 1.49698 1.19585 1.46959 1.44272 1.21707 1.26505 1.18196 0.82207 0.83875 0.76170 1.90749 1.78826 1.22841 1.41723 1.19148 0.91937 0.93382 1.20173 1.23990 1.01918 0.94316 0.94695 1.20675 0.92634 0.98909 1.11792 1.21053 0.97735 0.93509 0.94605 1.21258 0.98396 0.94726 1.10374 1.19067 0.92194 0.83649 0.90757 1.83664 1.35389 1.13707 1.75696 1.20873 0.87752 0.91396 1.46795 0.87343 1.24488 0.97954 0.95660 0.95394 1.69628 1.24915 1.10281 1.45661 0.86137 0.81925 0.78827 0.79924 1.19474 1.20920 1.18082 1.22448 0.97427 0.81016 0.95795 1.23756 1.04160 0.94602 0.95093 1.22942 1.02705 0.95906 0.97920 1.26350 1.09053 0.96959 0.97404 0.90044 0.90566 0.91591 0.73515 0.75616 0.86939 0.86925 0.84420 0.90784 0.88522 0.91405 0.86905 0.89739 0.90271 0.79202 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.83 37.16 0.33 -1.24 16 2 C 0.17 2.44 3.17 -69.08 -0.22 2.22 16 3 H 0.12 1.85 7.83 -51.93 -0.41 1.45 16 4 C 0.46 6.22 7.56 36.00 0.27 6.49 16 5 O -0.49 -7.30 12.20 -18.75 -0.23 -7.53 16 6 O -0.52 -5.74 13.42 -39.27 -0.53 -6.26 16 7 N -0.65 -10.54 2.39 -160.19 -0.38 -10.92 16 8 C 0.60 12.40 5.56 -12.47 -0.07 12.33 16 9 O -0.47 -11.37 16.54 -13.15 -0.22 -11.59 16 10 C -0.24 -5.05 5.56 -104.81 -0.58 -5.63 16 11 C -0.13 -2.30 5.68 -39.20 -0.22 -2.52 16 12 C -0.22 -3.61 10.03 -39.61 -0.40 -4.00 16 13 C -0.05 -0.89 10.03 -39.54 -0.40 -1.29 16 14 C -0.23 -4.92 9.14 -39.44 -0.36 -5.28 16 15 C 0.20 4.78 6.63 -38.60 -0.26 4.52 16 16 O -0.18 -5.01 7.16 -17.65 -0.13 -5.13 16 17 C -0.39 -11.19 9.92 30.90 0.31 -10.89 16 18 H 0.11 3.09 5.49 -52.48 -0.29 2.81 16 19 C 0.07 2.00 5.49 -17.52 -0.10 1.90 16 20 N -0.87 -25.02 13.96 55.48 0.77 -24.25 16 21 Si 0.91 22.82 28.62 -169.99 -4.86 17.96 16 22 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.26 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.14 1.78 3.63 -67.12 -0.24 1.54 16 26 C -0.14 -1.71 4.68 -25.92 -0.12 -1.84 16 27 C -0.16 -1.65 7.39 -25.92 -0.19 -1.84 16 28 C -0.26 -3.43 6.44 -25.92 -0.17 -3.60 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.60 6.88 -51.93 -0.36 0.24 16 32 H 0.41 2.74 9.10 45.56 0.41 3.16 16 33 H 0.23 3.29 0.23 -130.13 -0.03 3.26 16 34 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.11 1.65 8.06 -52.48 -0.42 1.22 16 36 H 0.14 3.06 5.67 -52.49 -0.30 2.77 16 37 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.10 1.07 6.86 -51.93 -0.36 0.71 16 39 H 0.07 0.80 7.71 -51.93 -0.40 0.40 16 40 H 0.11 1.70 5.09 -51.93 -0.26 1.44 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.08 0.78 7.91 -51.93 -0.41 0.37 16 43 H 0.19 2.98 2.04 -135.73 -0.28 2.70 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 347.16 15.07 5.23 5.23 Total: -1.00 -33.38 347.16 -7.10 -40.48 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -4.34 Total: 11.14 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -2.42 Total: -9.12 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.39 Total: -35.17 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -1.10 Total: -30.52 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.86 Total: 17.96 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.38 -7.10 -40.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589477494.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.046 kcal (2) G-P(sol) polarization free energy of solvation -33.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds