Wall clock time and date at job start Tue Mar 31 2020 18:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46834 * 2 1 4 4 C 1.50697 * 109.47267 * 239.99868 * 2 1 3 5 5 O 1.20827 * 119.99905 * 260.00150 * 4 2 1 6 6 O 1.34234 * 120.00025 * 79.99502 * 4 2 1 7 7 N 1.46496 * 109.47135 * 119.99559 * 2 1 3 8 8 C 1.34771 * 120.00493 * 228.73788 * 7 2 1 9 9 O 1.21597 * 120.00095 * 59.32290 * 8 7 2 10 10 C 1.47534 * 120.00184 * 239.33476 * 8 7 2 11 11 C 1.39666 * 120.19505 * 327.49974 * 10 8 7 12 12 C 1.37826 * 119.92257 * 180.02562 * 11 10 8 13 13 C 1.38574 * 120.32024 * 359.97438 * 12 11 10 14 14 C 1.38023 * 120.40308 * 0.03305 * 13 12 11 15 15 C 1.38834 * 120.07142 * 359.67377 * 14 13 12 16 16 O 1.35521 * 120.16441 * 180.30215 * 15 14 13 17 17 C 1.34818 * 116.99764 * 357.15745 * 16 15 14 18 18 H 1.08006 * 119.99861 * 353.76958 * 17 16 15 19 19 C 1.38691 * 119.99970 * 173.77007 * 17 16 15 20 20 N 1.31517 * 120.00394 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00033 * 359.97438 * 19 17 16 22 22 H 1.48495 * 109.47042 * 90.00145 * 21 19 17 23 23 H 1.48498 * 109.47169 * 209.99925 * 21 19 17 24 24 H 1.48504 * 109.47129 * 329.99929 * 21 19 17 25 25 C 1.46506 * 119.99656 * 48.73901 * 7 2 1 26 26 C 1.53778 * 113.61566 * 80.30637 * 25 7 2 27 27 C 1.53781 * 87.08121 * 139.97884 * 26 25 7 28 28 C 1.53780 * 113.61039 * 177.80383 * 25 7 2 29 29 H 1.08992 * 109.47501 * 300.00097 * 1 2 3 30 30 H 1.08998 * 109.47124 * 60.00767 * 1 2 3 31 31 H 1.09007 * 109.47088 * 179.97438 * 1 2 3 32 32 H 0.96695 * 116.99720 * 179.97438 * 6 4 2 33 33 H 1.08005 * 120.04060 * 359.97438 * 11 10 8 34 34 H 1.07997 * 119.84208 * 179.97438 * 12 11 10 35 35 H 1.08005 * 119.79740 * 180.02562 * 13 12 11 36 36 H 1.08000 * 119.96353 * 179.97438 * 14 13 12 37 37 H 0.97001 * 120.00510 * 179.97438 * 20 19 17 38 38 H 1.09004 * 112.90685 * 309.04521 * 25 7 2 39 39 H 1.09001 * 113.60916 * 254.52454 * 26 25 7 40 40 H 1.08993 * 113.61365 * 25.43053 * 26 25 7 41 41 H 1.08999 * 113.61731 * 89.11556 * 27 26 25 42 42 H 1.09000 * 113.61100 * 220.01379 * 27 26 25 43 43 H 1.06290 * 80.88874 * 297.53902 * 33 11 10 44 44 H 1.09003 * 113.62128 * 105.38309 * 28 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.4051 -1.8574 -1.1559 6 8 2.0657 -0.0691 -2.4091 7 7 2.0184 -0.6905 1.1962 8 6 2.9687 -0.1201 1.9629 9 8 2.7675 0.9648 2.4738 10 6 4.2532 -0.8118 2.1821 11 6 4.3008 -2.2069 2.2286 12 6 5.5038 -2.8473 2.4342 13 6 6.6684 -2.1137 2.5948 14 6 6.6367 -0.7345 2.5513 15 6 5.4349 -0.0726 2.3391 16 8 5.4027 1.2813 2.2900 17 6 6.5634 1.9297 2.5135 18 1 7.4402 1.3777 2.8186 19 6 6.6315 3.3054 2.3515 20 7 7.7637 3.9381 2.5700 21 14 5.1152 4.2600 1.8230 22 1 4.3563 4.6886 3.0252 23 1 5.5291 5.4561 1.0464 24 1 4.2550 3.3939 0.9772 25 6 1.4736 -2.0012 1.5590 26 6 2.0866 -3.1651 0.7625 27 6 2.0746 -3.9662 2.0750 28 6 2.1270 -2.6154 2.8082 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.3963 -0.5659 -3.1700 33 1 3.3958 -2.7832 2.1044 34 1 5.5390 -3.9261 2.4704 35 1 7.6066 -2.6243 2.7550 36 1 7.5486 -0.1698 2.6777 37 1 7.8114 4.9002 2.4564 38 1 0.3839 -2.0155 1.5845 39 1 1.4223 -3.5689 -0.0016 40 1 3.0885 -2.9572 0.3870 41 1 1.1494 -4.5178 2.2415 42 1 2.9651 -4.5775 2.2216 43 1 3.1401 -2.2574 2.9921 44 1 1.4961 -2.5743 3.6961 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589477494.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:33 Heat of formation + Delta-G solvation = 18.503235 kcal Electronic energy + Delta-G solvation = -30850.129714 eV Core-core repulsion = 26739.497068 eV Total energy + Delta-G solvation = -4110.632646 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.25329 -41.19810 -40.49368 -39.63392 -38.05026 -37.08047 -36.12412 -34.57318 -32.80853 -31.57257 -30.81883 -27.52235 -26.76552 -26.64698 -25.66998 -24.76272 -23.54862 -22.32139 -21.43998 -20.44963 -19.72945 -19.17511 -18.85961 -18.15553 -17.76942 -17.25592 -17.07884 -16.72838 -16.46154 -16.35039 -15.85403 -15.78135 -15.45806 -14.95453 -14.69731 -14.45452 -14.38889 -14.19435 -14.09204 -13.65923 -13.51497 -13.26378 -13.08566 -12.94555 -12.75318 -12.57998 -12.56036 -12.41530 -12.18975 -12.12544 -11.97874 -11.66389 -11.60733 -11.06497 -10.99549 -10.94716 -10.47567 -9.62863 -9.39259 -9.13310 -8.61785 -6.32005 -0.08102 0.55418 1.09260 1.19481 1.26284 1.32101 1.43405 1.81139 2.19835 2.26631 2.64597 2.88671 3.02040 3.41850 3.55134 3.66547 3.77774 3.90102 3.92326 4.01102 4.16977 4.20276 4.23074 4.47046 4.48506 4.61849 4.65137 4.71830 4.77516 4.89163 4.97731 5.07029 5.09697 5.13057 5.15290 5.25017 5.34590 5.43525 5.47711 5.56799 5.66043 5.70766 5.78832 5.81811 6.11438 6.28895 6.72738 6.81783 7.02905 7.48486 8.49062 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011555 B = 0.005687 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.516266 B = 4922.584216 C = 6252.432335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.160 3.840 3 H 0.091 0.909 4 C 0.463 3.537 5 O -0.506 6.506 6 O -0.515 6.515 7 N -0.652 5.652 8 C 0.605 3.395 9 O -0.521 6.521 10 C -0.253 4.253 11 C -0.123 4.123 12 C -0.200 4.200 13 C -0.041 4.041 14 C -0.255 4.255 15 C 0.162 3.838 16 O -0.222 6.222 17 C -0.403 4.403 18 H 0.091 0.909 19 C 0.025 3.975 20 N -0.909 5.909 21 Si 0.959 3.041 22 H -0.273 1.273 23 H -0.258 1.258 24 H -0.276 1.276 25 C 0.125 3.875 26 C -0.136 4.136 27 C -0.138 4.138 28 C -0.273 4.273 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.427 0.573 33 H 0.262 0.738 34 H 0.165 0.835 35 H 0.151 0.849 36 H 0.117 0.883 37 H 0.287 0.713 38 H 0.127 0.873 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.116 0.884 42 H 0.094 0.906 43 H 0.162 0.838 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.650 -17.634 -7.103 24.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.054 3.946 3 H 0.109 0.891 4 C 0.304 3.696 5 O -0.394 6.394 6 O -0.329 6.329 7 N -0.392 5.392 8 C 0.398 3.602 9 O -0.395 6.395 10 C -0.258 4.258 11 C -0.137 4.137 12 C -0.218 4.218 13 C -0.059 4.059 14 C -0.274 4.274 15 C 0.109 3.891 16 O -0.127 6.127 17 C -0.479 4.479 18 H 0.108 0.892 19 C -0.175 4.175 20 N -0.548 5.548 21 Si 0.783 3.217 22 H -0.199 1.199 23 H -0.182 1.182 24 H -0.201 1.201 25 C 0.024 3.976 26 C -0.175 4.175 27 C -0.175 4.175 28 C -0.307 4.307 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.289 0.711 33 H 0.276 0.724 34 H 0.183 0.817 35 H 0.169 0.831 36 H 0.135 0.865 37 H 0.097 0.903 38 H 0.144 0.856 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.135 0.865 42 H 0.113 0.887 43 H 0.178 0.822 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.850 -16.715 -6.493 23.933 hybrid contribution 0.670 0.991 -0.417 1.266 sum -15.181 -15.724 -6.910 22.923 Atomic orbital electron populations 1.22026 0.88458 1.04691 1.04902 1.20310 0.98486 0.95261 0.80522 0.89130 1.24165 0.74582 0.85691 0.85190 1.90736 1.44344 1.18692 1.85592 1.84503 1.78876 1.49774 1.19710 1.46947 1.43076 1.22806 1.26341 1.18354 0.82905 0.83047 0.75891 1.90723 1.79807 1.24991 1.43975 1.19601 0.91386 0.95082 1.19774 1.24666 1.03848 0.92741 0.92477 1.21355 0.91221 1.01417 1.07833 1.21506 1.00280 0.91729 0.92422 1.21306 0.97019 0.96710 1.12343 1.19726 0.94347 0.83055 0.91939 1.83632 1.34499 1.15462 1.79063 1.20829 0.87977 0.91863 1.47208 0.89200 1.25080 1.00108 0.96332 0.96020 1.69675 1.26089 1.10772 1.48282 0.85386 0.78905 0.78123 0.79262 1.19857 1.18195 1.20098 1.22951 0.99057 0.79547 0.96083 1.23629 1.02884 0.94577 0.96367 1.22976 1.05137 0.94517 0.94875 1.26166 1.07150 0.99036 0.98380 0.90385 0.88637 0.89653 0.71148 0.72387 0.81728 0.83116 0.86520 0.90280 0.85565 0.90132 0.89461 0.86548 0.88734 0.82231 0.89937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 8.83 71.98 0.64 -1.96 16 2 C 0.16 4.43 3.17 44.25 0.14 4.57 16 3 H 0.09 2.99 7.83 -2.39 -0.02 2.97 16 4 C 0.46 11.85 7.56 71.24 0.54 12.39 16 5 O -0.51 -13.83 12.20 21.96 0.27 -13.56 16 6 O -0.51 -10.56 13.42 -51.45 -0.69 -11.25 16 7 N -0.65 -20.45 2.39 -778.97 -1.86 -22.32 16 8 C 0.60 25.53 5.56 86.70 0.48 26.01 16 9 O -0.52 -26.59 16.54 13.60 0.23 -26.36 16 10 C -0.25 -10.77 5.56 -19.99 -0.11 -10.88 16 11 C -0.12 -3.92 5.68 22.52 0.13 -3.79 16 12 C -0.20 -5.72 10.03 22.25 0.22 -5.50 16 13 C -0.04 -1.38 10.03 22.30 0.22 -1.15 16 14 C -0.25 -11.41 9.14 22.36 0.20 -11.21 16 15 C 0.16 8.16 6.63 22.91 0.15 8.31 16 16 O -0.22 -13.05 7.16 -2.49 -0.02 -13.07 16 17 C -0.40 -24.80 9.92 67.93 0.67 -24.12 16 18 H 0.09 5.64 5.49 -2.91 -0.02 5.62 16 19 C 0.03 1.52 5.49 84.85 0.47 1.98 16 20 N -0.91 -55.32 13.96 21.62 0.30 -55.02 16 21 Si 0.96 49.93 28.62 68.60 1.96 51.89 16 22 H -0.27 -14.14 7.11 99.48 0.71 -13.43 16 23 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 24 H -0.28 -15.00 7.11 99.48 0.71 -14.29 16 25 C 0.12 2.86 3.63 45.52 0.17 3.03 16 26 C -0.14 -2.80 4.68 31.12 0.15 -2.65 16 27 C -0.14 -2.09 7.39 31.12 0.23 -1.86 16 28 C -0.27 -6.08 6.44 31.12 0.20 -5.88 16 29 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.22 6.88 -2.38 -0.02 1.21 16 32 H 0.43 4.84 9.10 -74.06 -0.67 4.17 16 33 H 0.26 6.57 0.23 -75.84 -0.02 6.55 16 34 H 0.17 3.13 8.06 -2.91 -0.02 3.11 16 35 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 36 H 0.12 5.64 5.67 -2.91 -0.02 5.63 16 37 H 0.29 16.03 8.31 -92.71 -0.77 15.26 16 38 H 0.13 2.20 6.86 -2.39 -0.02 2.18 16 39 H 0.08 1.50 7.71 -2.39 -0.02 1.48 16 40 H 0.09 2.32 5.09 -2.39 -0.01 2.31 16 41 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.09 1.22 7.91 -2.39 -0.02 1.21 16 43 H 0.16 4.58 2.04 -81.10 -0.17 4.41 16 44 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -80.85 347.16 4.92 -75.93 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: 0.24 Total: 26.47 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: 4.50 Total: -12.71 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: -1.56 Total: -77.34 kcal Atomic # 8 Polarization: -64.03 SS G_CDS: -0.22 Total: -64.25 kcal Atomic # 14 Polarization: 49.93 SS G_CDS: 1.96 Total: 51.89 kcal Total: -80.85 4.92 -75.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589477494.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.436 kcal (2) G-P(sol) polarization free energy of solvation -80.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds