Wall clock time and date at job start Tue Mar 31 2020 18:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47166 * 2 1 4 4 C 1.50703 * 109.46770 * 119.99734 * 2 1 3 5 5 O 1.20825 * 119.99894 * 120.00427 * 4 2 1 6 6 O 1.34232 * 119.99845 * 300.00162 * 4 2 1 7 7 N 1.46493 * 109.47367 * 239.99661 * 2 1 3 8 8 C 1.34781 * 120.00243 * 120.00307 * 7 2 1 9 9 O 1.21585 * 119.99865 * 297.86455 * 8 7 2 10 10 C 1.47530 * 120.00118 * 117.85655 * 8 7 2 11 11 C 1.39671 * 120.19780 * 54.22276 * 10 8 7 12 12 C 1.37826 * 119.92290 * 180.02562 * 11 10 8 13 13 C 1.38578 * 120.32088 * 0.02562 * 12 11 10 14 14 C 1.38020 * 120.40099 * 0.02562 * 13 12 11 15 15 C 1.38830 * 120.07477 * 359.97438 * 14 13 12 16 16 O 1.35523 * 120.16087 * 180.02562 * 15 14 13 17 17 C 1.34809 * 117.00103 * 354.39876 * 16 15 14 18 18 H 1.07994 * 120.00298 * 5.05166 * 17 16 15 19 19 C 1.38705 * 119.99787 * 185.05845 * 17 16 15 20 20 N 1.31510 * 120.00288 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99514 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47053 * 90.00125 * 21 19 17 23 23 H 1.48501 * 109.46904 * 209.99618 * 21 19 17 24 24 H 1.48497 * 109.47273 * 329.99563 * 21 19 17 25 25 C 1.46505 * 120.00192 * 299.99856 * 7 2 1 26 26 C 1.53774 * 113.61605 * 254.45846 * 25 7 2 27 27 C 1.53782 * 87.08232 * 220.01862 * 26 25 7 28 28 C 1.53779 * 113.61413 * 156.95580 * 25 7 2 29 29 H 1.08994 * 109.47306 * 300.00345 * 1 2 3 30 30 H 1.09004 * 109.46308 * 60.00416 * 1 2 3 31 31 H 1.08998 * 109.46768 * 179.97438 * 1 2 3 32 32 H 0.96704 * 116.99773 * 180.02562 * 6 4 2 33 33 H 1.08004 * 120.03488 * 0.04147 * 11 10 8 34 34 H 1.08000 * 119.83977 * 180.28155 * 12 11 10 35 35 H 1.08001 * 119.79627 * 179.97438 * 13 12 11 36 36 H 1.08005 * 119.96245 * 180.02562 * 14 13 12 37 37 H 0.97002 * 120.00613 * 180.02562 * 20 19 17 38 38 H 1.09001 * 112.84319 * 25.76327 * 25 7 2 39 39 H 1.09007 * 113.61540 * 334.56561 * 26 25 7 40 40 H 1.09002 * 113.62058 * 105.46973 * 26 25 7 41 41 H 1.08998 * 113.61471 * 270.88486 * 27 26 25 42 42 H 1.09001 * 113.61883 * 139.98204 * 27 26 25 43 43 H 1.08994 * 113.61870 * 254.53348 * 28 25 7 44 44 H 1.09004 * 113.61339 * 25.35844 * 28 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7270 -1.6927 1.1197 6 8 1.7079 -0.2517 2.4496 7 7 2.0184 -0.6906 -1.1961 8 6 2.7934 -0.0357 -2.0833 9 8 2.3568 0.9344 -2.6720 10 6 4.1714 -0.4958 -2.3399 11 6 4.4119 -1.8202 -2.7126 12 6 5.7015 -2.2442 -2.9505 13 6 6.7628 -1.3625 -2.8212 14 6 6.5405 -0.0512 -2.4526 15 6 5.2481 0.3935 -2.2090 16 8 5.0278 1.6809 -1.8474 17 6 6.1135 2.4495 -1.6286 18 1 7.1008 2.0572 -1.8221 19 6 5.9624 3.7444 -1.1548 20 7 4.7600 4.2224 -0.9195 21 14 7.4668 4.8091 -0.8509 22 1 7.7962 5.5647 -2.0862 23 1 7.1839 5.7626 0.2519 24 1 8.6163 3.9466 -0.4768 25 6 1.6646 -2.0933 -1.4278 26 6 2.8221 -3.0717 -1.1680 27 6 2.3489 -3.8393 -2.4136 28 6 1.7454 -2.5130 -2.9051 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 2.0539 -0.7404 3.2090 33 1 3.5881 -2.5112 -2.8146 34 1 5.8855 -3.2674 -3.2431 35 1 7.7701 -1.7039 -3.0093 36 1 7.3729 0.6300 -2.3544 37 1 4.6543 5.1280 -0.5885 38 1 0.7315 -2.3800 -0.9429 39 1 3.8083 -2.6213 -1.2811 40 1 2.7172 -3.6360 -0.2413 41 1 1.6035 -4.6048 -2.1978 42 1 3.1647 -4.2054 -3.0370 43 1 0.7713 -2.6262 -3.3808 44 1 2.4362 -1.9089 -3.4934 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589477495.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:38 Heat of formation + Delta-G solvation = -29.905193 kcal Electronic energy + Delta-G solvation = -30728.358385 eV Core-core repulsion = 26615.626592 eV Total energy + Delta-G solvation = -4112.731793 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.28432 -39.84849 -38.64352 -37.82083 -36.29990 -35.89173 -34.74626 -32.37379 -31.07241 -30.04755 -28.89468 -25.57423 -25.51344 -25.38229 -24.49081 -23.14636 -22.06749 -20.92745 -20.15275 -18.70505 -18.16585 -17.66289 -17.37469 -16.54912 -16.31629 -15.83736 -15.49349 -15.12446 -15.03379 -14.52596 -14.45296 -14.01093 -13.78457 -13.48692 -13.32545 -13.13280 -12.76456 -12.65883 -12.39324 -12.24716 -12.08250 -11.92277 -11.73859 -11.57269 -11.28825 -11.24614 -11.16269 -10.90196 -10.72500 -10.67138 -10.52777 -10.45918 -10.09711 -9.91817 -9.62277 -9.23554 -8.89874 -8.18829 -7.93796 -7.31955 -6.50365 -4.10051 1.78030 2.31365 2.41835 2.65731 3.10131 3.10474 3.15452 3.20227 3.52059 3.91047 4.47892 4.62751 4.70471 4.82538 4.99168 5.03162 5.11207 5.17302 5.19569 5.34792 5.38916 5.50020 5.60256 5.70767 5.74200 5.80083 5.85819 5.93378 5.96187 6.03128 6.14814 6.19138 6.25671 6.36431 6.56060 6.63604 6.70284 6.70529 6.96623 7.06811 7.15505 7.26304 7.30132 7.70328 7.77490 7.92153 8.09538 8.47311 8.93050 9.60334 10.65923 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011382 B = 0.005340 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.374821 B = 5242.232030 C = 6568.110717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.173 3.827 3 H 0.127 0.873 4 C 0.463 3.537 5 O -0.494 6.494 6 O -0.517 6.517 7 N -0.657 5.657 8 C 0.619 3.381 9 O -0.465 6.465 10 C -0.233 4.233 11 C -0.081 4.081 12 C -0.228 4.228 13 C -0.054 4.054 14 C -0.238 4.238 15 C 0.189 3.811 16 O -0.158 6.158 17 C -0.398 4.398 18 H 0.094 0.906 19 C 0.043 3.957 20 N -0.850 5.850 21 Si 0.942 3.058 22 H -0.272 1.272 23 H -0.276 1.276 24 H -0.267 1.267 25 C 0.148 3.852 26 C -0.170 4.170 27 C -0.152 4.152 28 C -0.175 4.175 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.405 0.595 33 H 0.169 0.831 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.131 0.869 37 H 0.272 0.728 38 H 0.100 0.900 39 H 0.123 0.877 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.085 -13.007 2.570 14.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.067 3.933 3 H 0.144 0.856 4 C 0.303 3.697 5 O -0.380 6.380 6 O -0.329 6.329 7 N -0.395 5.395 8 C 0.410 3.590 9 O -0.333 6.333 10 C -0.239 4.239 11 C -0.098 4.098 12 C -0.247 4.247 13 C -0.072 4.072 14 C -0.257 4.257 15 C 0.132 3.868 16 O -0.059 6.059 17 C -0.474 4.474 18 H 0.111 0.889 19 C -0.163 4.163 20 N -0.483 5.483 21 Si 0.766 3.234 22 H -0.197 1.197 23 H -0.201 1.201 24 H -0.191 1.191 25 C 0.044 3.956 26 C -0.208 4.208 27 C -0.190 4.190 28 C -0.212 4.212 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.263 0.737 33 H 0.186 0.814 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.149 0.851 37 H 0.082 0.918 38 H 0.118 0.882 39 H 0.141 0.859 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.600 -12.066 1.958 13.892 hybrid contribution 1.279 0.142 0.849 1.541 sum -5.321 -11.923 2.807 13.355 Atomic orbital electron populations 1.22114 0.92379 1.02662 1.04041 1.20152 0.95578 0.97061 0.80538 0.85581 1.24230 0.77558 0.83047 0.84891 1.90710 1.34632 1.25799 1.86855 1.84553 1.72322 1.59250 1.16733 1.46871 1.57473 1.12214 1.22962 1.18082 0.83847 0.80521 0.76509 1.90734 1.73285 1.26694 1.42621 1.19063 0.92119 0.94440 1.18234 1.22432 0.99156 0.93896 0.94332 1.20524 0.92735 0.99475 1.11988 1.20913 0.98075 0.92995 0.95217 1.21099 0.96795 0.97119 1.10684 1.19195 0.91842 0.84882 0.90860 1.83962 1.34655 1.15095 1.72182 1.21396 0.85530 0.94669 1.45791 0.88855 1.25330 0.98488 0.96455 0.95991 1.70041 1.21448 1.16670 1.40141 0.85705 0.79745 0.79416 0.78541 1.19715 1.20146 1.19118 1.22277 0.98034 0.79834 0.95444 1.24374 1.02041 0.97218 0.97146 1.22867 1.00959 0.96139 0.99038 1.23915 1.02399 0.97810 0.97103 0.90494 0.90261 0.92225 0.73691 0.81417 0.87206 0.87256 0.85122 0.91835 0.88222 0.85938 0.91185 0.89761 0.90458 0.90786 0.87892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.12 37.16 0.34 -1.56 16 2 C 0.17 2.83 3.19 -69.08 -0.22 2.61 16 3 H 0.13 2.39 7.89 -51.93 -0.41 1.98 16 4 C 0.46 7.17 7.52 36.01 0.27 7.44 16 5 O -0.49 -8.57 13.90 -18.75 -0.26 -8.83 16 6 O -0.52 -6.41 13.33 -39.26 -0.52 -6.93 16 7 N -0.66 -11.62 2.31 -160.19 -0.37 -11.99 16 8 C 0.62 13.59 4.35 -12.47 -0.05 13.53 16 9 O -0.46 -11.85 17.58 2.40 0.04 -11.81 16 10 C -0.23 -5.18 5.48 -104.81 -0.57 -5.76 16 11 C -0.08 -1.48 5.30 -39.20 -0.21 -1.69 16 12 C -0.23 -3.93 10.03 -39.61 -0.40 -4.33 16 13 C -0.05 -0.98 10.03 -39.54 -0.40 -1.38 16 14 C -0.24 -5.24 9.16 -39.44 -0.36 -5.60 16 15 C 0.19 4.73 6.65 -38.60 -0.26 4.48 16 16 O -0.16 -4.59 8.96 -2.09 -0.02 -4.61 16 17 C -0.40 -11.19 9.49 30.91 0.29 -10.89 16 18 H 0.09 2.41 5.21 -52.49 -0.27 2.14 16 19 C 0.04 1.19 5.49 -17.52 -0.10 1.10 16 20 N -0.85 -24.94 13.67 55.48 0.76 -24.18 16 21 Si 0.94 20.47 29.55 -169.99 -5.02 15.45 16 22 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 23 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 C 0.15 2.11 3.31 -67.12 -0.22 1.89 16 26 C -0.17 -2.42 5.38 -25.92 -0.14 -2.56 16 27 C -0.15 -1.70 7.31 -25.92 -0.19 -1.89 16 28 C -0.17 -2.29 6.83 -25.92 -0.18 -2.46 16 29 H 0.08 0.83 8.11 -51.93 -0.42 0.41 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.63 6.77 -51.93 -0.35 0.28 16 32 H 0.40 3.23 9.10 45.56 0.41 3.65 16 33 H 0.17 2.59 0.88 -52.48 -0.05 2.55 16 34 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 35 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 36 H 0.13 2.83 5.64 -52.48 -0.30 2.54 16 37 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.10 1.22 6.70 -51.93 -0.35 0.87 16 39 H 0.12 2.10 3.89 -60.44 -0.23 1.86 16 40 H 0.07 1.00 7.47 -51.93 -0.39 0.61 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 0.81 7.56 -51.93 -0.39 0.42 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.10 1.60 4.59 -51.93 -0.24 1.36 16 LS Contribution 351.93 15.07 5.30 5.30 Total: -1.00 -34.60 351.93 -6.71 -41.32 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -4.23 Total: 13.34 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -2.39 Total: -7.06 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.39 Total: -36.17 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.76 Total: -32.18 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.60 -6.71 -41.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589477495.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.411 kcal (2) G-P(sol) polarization free energy of solvation -34.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds